mRNA_C-linearis_contig91.16816.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16816.1
Unique NamemRNA_C-linearis_contig91.16816.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 3.380e-21
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYTHW 279
            Q+ SWCD  +   W+   +  RP   S   Q   IL LDDFKCHKD+ F  +L  +A T  + IPGGLTP++QPLDR +NK  KR +R  YT++
Sbjct:  160 QEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.430e-21
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SW D  + + W++  +  RP   S   Q   IL LDDFKCHKDE+F   L + A T  + IPGGL P++QPLDR +NK+ KR +R KYT
Sbjct:    6 QEKSWSDQRECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYT 97
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-20
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRA 264
            Q+ SWCD  +   WL+E +  RP   S   Q  SIL LDDF+CH+ E+F + L  +  T  ++IPGGLTP++QPLDR +NKE KR MR 
Sbjct:  291 QEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.870e-20
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SWCD  +   W+ + +  RP   S   Q   IL LDDFKCHKD+ F   L  +A T  + IPGGLTP++QPLDR +NK+ KR +R  YT
Sbjct:  335 QEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 426
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.900e-20
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SWCD  +   W+ + +  RP   S   Q   IL LDDFKCHKD+ F   L  +A T  + IPGGLTP++QPLDR +NK+ KR +R  YT
Sbjct:  342 QEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 433
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.010e-20
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SWCD  +   W+ + +  RP   S   Q   IL LDDFKCHKD+ F   L  +A T  + IPGGLTP++QPLDR +NK+ KR +R  YT
Sbjct:  372 QEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 463
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.560e-20
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SW D  + + W++  +  RP   S   Q   IL LDDFKC KDE F   L   A T A+ IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct:    6 QEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYT 97
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.170e-19
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SW D  + + W++  +  RP   S   Q   IL LDDFKCHKDE +   L   A T  ++IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct:  222 QEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 313
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.420e-19
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SW D  + + W +  +  RP   S   Q   IL LDDFKCHKDE F   L   A T  + IPGGLTP++QPLDR +NK+ KR +R+KYT
Sbjct:  156 QEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYT 247
[Close]
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.600e-19
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:    1 QKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 273
            Q+ SW D  + + W++  +  RP   S   Q   IL LDDFKCH DE F   L   A T  + IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct:  417 QEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 508
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI3.380e-2146.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE5.430e-2147.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE1.130e-2049.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE45_9PHAE6.870e-2047.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE6.900e-2047.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE7.010e-2047.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE7.560e-2048.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.170e-1947.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE2.420e-1948.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.600e-1947.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:255864..256163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930783.2193086-CDS-C-linearis_contig91:255863..2561631622930783.2193086-CDS-C-linearis_contig91:255863..256163Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 255864..256163 -
1690881247.8389926-CDS-C-linearis_contig91:255863..2561631690881247.8389926-CDS-C-linearis_contig91:255863..256163Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 255864..256163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16816.1prot_C-linearis_contig91.16816.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 255864..256163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16816.1

>prot_C-linearis_contig91.16816.1 ID=prot_C-linearis_contig91.16816.1|Name=mRNA_C-linearis_contig91.16816.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
QKASWCDTTQTDAWLTEEFMRRPGASGFSQPASILTLDDFKCHKDEAFQQ
KLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYTHWVKDEFDR
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mRNA from alignment at C-linearis_contig91:255864..256163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16816.1 ID=mRNA_C-linearis_contig91.16816.1|Name=mRNA_C-linearis_contig91.16816.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at C-linearis_contig91:255864..256163- (Chordaria linearis ClinC8C monoicous)
CAGAAGGCTTCATGGTGCGACACGACCCAGACCGACGCGTGGCTAACGGA
GGAGTTCATGCGCCGCCCCGGCGCCAGCGGTTTCTCTCAGCCGGCCAGCA
TTCTCACGCTGGACGACTTCAAGTGCCACAAGGACGAAGCGTTCCAGCAG
AAGCTGGCAAGCAAGGCCAAGACGGAGGCGGTGATGATTCCTGGCGGGCT
GACGCCGGTGGTCCAGCCGCTCGACCGCAGCATCAACAAGGAGTTCAAGC
GTGGGATGAGGGCCAAGTACACCCACTGGGTGAAGGACGAGTTCGACCGC
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Coding sequence (CDS) from alignment at C-linearis_contig91:255864..256163-

>mRNA_C-linearis_contig91.16816.1 ID=mRNA_C-linearis_contig91.16816.1|Name=mRNA_C-linearis_contig91.16816.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig91:255864..256163- (Chordaria linearis ClinC8C monoicous)
CAGAAGGCTTCATGGTGCGACACGACCCAGACCGACGCGTGGCTAACGGA
GGAGTTCATGCGCCGCCCCGGCGCCAGCGGTTTCTCTCAGCCGGCCAGCA
TTCTCACGCTGGACGACTTCAAGTGCCACAAGGACGAAGCGTTCCAGCAG
AAGCTGGCAAGCAAGGCCAAGACGGAGGCGGTGATGATTCCTGGCGGGCT
GACGCCGGTGGTCCAGCCGCTCGACCGCAGCATCAACAAGGAGTTCAAGC
GTGGGATGAGGGCCAAGTACACCCACTGGGTGAAGGACGAGTTCGACCGC
CAGAAGGCTTCATGGTGCGACACGACCCAGACCGACGCGTGGCTAACGGA
GGAGTTCATGCGCCGCCCCGGCGCCAGCGGTTTCTCTCAGCCGGCCAGCA
TTCTCACGCTGGACGACTTCAAGTGCCACAAGGACGAAGCGTTCCAGCAG
AAGCTGGCAAGCAAGGCCAAGACGGAGGCGGTGATGATTCCTGGCGGGCT
GACGCCGGTGGTCCAGCCGCTCGACCGCAGCATCAACAAGGAGTTCAAGC
GTGGGATGAGGGCCAAGTACACCCACTGGGTGAAGGACGAGTTCGACCGC
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