mRNA_C-linearis_contig91.16807.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16807.1
Unique NamemRNA_C-linearis_contig91.16807.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16807.1 vs. uniprot
Match: A0A6H5K7D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-17
Identity = 48/69 (69.57%), Postives = 50/69 (72.46%), Query Frame = -2 
Query:    3 TALAVSHDVLRLLTLHTATAHTAFAALHNLHRCSAASPHRHRHRRPVLLFSSLLGSLWQLFRGRKRNVL 209
            TALAV+HD+LRLLTLHTATAHTAFAALHNLH                   SSLLGSLWQLFRGRKRNVL
Sbjct:  166 TALAVAHDILRLLTLHTATAHTAFAALHNLH-------------------SSLLGSLWQLFRGRKRNVL 215
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BLAST of mRNA_C-linearis_contig91.16807.1 vs. uniprot
Match: D7FHV3_ECTSI (Phosphatidylinositol glycan anchor biosynthesis, class Q n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 7.160e-17
Identity = 47/69 (68.12%), Postives = 49/69 (71.01%), Query Frame = -2 
Query:    3 TALAVSHDVLRLLTLHTATAHTAFAALHNLHRCSAASPHRHRHRRPVLLFSSLLGSLWQLFRGRKRNVL 209
            TALAV+HD+LRLL LHTATAHTAFAALHNLH                   SSLLGSLWQLFRGRKRNVL
Sbjct:  244 TALAVAHDILRLLALHTATAHTAFAALHNLH-------------------SSLLGSLWQLFRGRKRNVL 293
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7D0_9PHAE1.700e-1769.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHV3_ECTSI7.160e-1768.12Phosphatidylinositol glycan anchor biosynthesis, c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:190219..190720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.8232608-CDS-C-linearis_contig91:190218..1903261622930778.8232608-CDS-C-linearis_contig91:190218..190326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 190219..190326 +
1690881245.65462-CDS-C-linearis_contig91:190218..1903261690881245.65462-CDS-C-linearis_contig91:190218..190326Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 190219..190326 +
1622930778.8603356-CDS-C-linearis_contig91:190618..1907201622930778.8603356-CDS-C-linearis_contig91:190618..190720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 190619..190720 +
1690881245.6737342-CDS-C-linearis_contig91:190618..1907201690881245.6737342-CDS-C-linearis_contig91:190618..190720Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 190619..190720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16807.1prot_C-linearis_contig91.16807.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 190219..190720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16807.1

>prot_C-linearis_contig91.16807.1 ID=prot_C-linearis_contig91.16807.1|Name=mRNA_C-linearis_contig91.16807.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=70bp
RSTFRLRPRNSCHRDPSRELKRRTGRRWRWRCGDAALHLCRLWRAAKAVW
AVAVCRVRSRRTSWETASAV
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mRNA from alignment at C-linearis_contig91:190219..190720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16807.1 ID=mRNA_C-linearis_contig91.16807.1|Name=mRNA_C-linearis_contig91.16807.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=502bp|location=Sequence derived from alignment at C-linearis_contig91:190219..190720+ (Chordaria linearis ClinC8C monoicous)
CGCAGCACGTTTCGCTTGCGGCCCCGGAACAGCTGCCACAGGGACCCCAG
TAGAGAGCTGAAGAGGAGAACGGGGCGGCGGTGGCGGTGGCGGTGTGGAG
ATGCAGCGGTGAATCCCAGGGCGGTAAAAATCGCTTGTTCATAATATGTT
GAGGGAGGCAGGGATGGGTGCAAACTTGAACAAGGCAGCGACTGAGTTAT
CTCTCCCCCGTTCGTTCTCTCTCCGTCTACGTCAACGATCACATGACTTG
AGGCAAACCAACGATTGAGTAGGTATACCCCCCTCCCCCTCTTTCGTTGA
CACTCGCATAAATCAAGGCAAGCGACAACTGAGCCCCCACCCCCCTCTCC
CCTATACTCTTTCATCCACGTCGCCCCTTGGCATGCACGATGCACGCCAG
CTGCACCTGTGCAGGTTGTGGAGAGCGGCGAAGGCGGTGTGGGCCGTGGC
CGTGTGCAGGGTGAGGAGCCGGAGGACGTCGTGGGAGACGGCGAGCGCGG
TG
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Coding sequence (CDS) from alignment at C-linearis_contig91:190219..190720+

>mRNA_C-linearis_contig91.16807.1 ID=mRNA_C-linearis_contig91.16807.1|Name=mRNA_C-linearis_contig91.16807.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at C-linearis_contig91:190219..190720+ (Chordaria linearis ClinC8C monoicous)
CGCAGCACGTTTCGCTTGCGGCCCCGGAACAGCTGCCACAGGGACCCCAG
TAGAGAGCTGAAGAGGAGAACGGGGCGGCGGTGGCGGTGGCGGTGTGGAG
ATGCAGCGCGCAGCACGTTTCGCTTGCGGCCCCGGAACAGCTGCCACAGG
GACCCCAGTAGAGAGCTGAAGAGGAGAACGGGGCGGCGGTGGCGGTGGCG
GTGTGGAGATGCAGCGCTGCACCTGTGCAGGTTGTGGAGAGCGGCGAAGG
CGGTGTGGGCCGTGGCCGTGTGCAGGGTGAGGAGCCGGAGGACGTCGTGG
GAGACGGCGAGCGCGGTGCTGCACCTGTGCAGGTTGTGGAGAGCGGCGAA
GGCGGTGTGGGCCGTGGCCGTGTGCAGGGTGAGGAGCCGGAGGACGTCGT
GGGAGACGGCGAGCGCGGTG
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