mRNA_C-linearis_contig91.16799.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16799.1
Unique NamemRNA_C-linearis_contig91.16799.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16799.1 vs. uniprot
Match: A0A6H5K2D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.970e-6
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:  893 PGASCFPPPLPRPAGAFGVVQEARAFAPAQHLAVLQALLN-GEEEQGDRGFQSDSDSE 1063
            PG  CFPPPLP P+GA GV       APAQHLAVLQALLN G  E+G  G  SDSDSE
Sbjct:  388 PGTRCFPPPLPIPSGAGGV-------APAQHLAVLQALLNEGGGEEG--GSYSDSDSE 436
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2D9_9PHAE5.970e-665.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:87452..89793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1395
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16799.1prot_C-linearis_contig91.16799.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 87760..88716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.2492836-UTR-C-linearis_contig91:87451..877591622930779.2492836-UTR-C-linearis_contig91:87451..87759Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 87452..87759 -
1690881245.8324018-UTR-C-linearis_contig91:87451..877591690881245.8324018-UTR-C-linearis_contig91:87451..87759Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 87452..87759 -
1622930779.283173-UTR-C-linearis_contig91:88716..887251622930779.283173-UTR-C-linearis_contig91:88716..88725Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 88717..88725 -
1690881245.8531523-UTR-C-linearis_contig91:88716..887251690881245.8531523-UTR-C-linearis_contig91:88716..88725Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 88717..88725 -
1622930779.2980797-UTR-C-linearis_contig91:89672..897931622930779.2980797-UTR-C-linearis_contig91:89672..89793Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 89673..89793 -
1690881245.863195-UTR-C-linearis_contig91:89672..897931690881245.863195-UTR-C-linearis_contig91:89672..89793Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 89673..89793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.2637825-CDS-C-linearis_contig91:87759..887161622930779.2637825-CDS-C-linearis_contig91:87759..88716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 87760..88716 -
1690881245.843016-CDS-C-linearis_contig91:87759..887161690881245.843016-CDS-C-linearis_contig91:87759..88716Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 87760..88716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16799.1

>prot_C-linearis_contig91.16799.1 ID=prot_C-linearis_contig91.16799.1|Name=mRNA_C-linearis_contig91.16799.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=319bp
MLNDWDGLPLGGTLAGGPVSRPEPKTASTSTNSESTRRTAPPPPPPAPSS
IDLSSVGAPGPSAAAAGGVMDSNKSVGIGAAASASAPPSASAAAGAAVSS
SVGGGGGRGGSATVLGGGTGAQVVSGIAASSPGAAANGGIGNNDKGSGSS
SSSSNNNNSASRVSSEGGCSSTSASSSSNSSNSRRKRSCNGSGGNAPPAA
APAAASGGGHDYSGVPSRNTPHHHPHNNTTTTTTTTTTNNNNNNRSKVGA
SPAYPGASCFPPPLPRPAGAFGVVQEARAFAPAQHLAVLQALLNGEEEQG
DRGFQSDSDSEREEDGPC*
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mRNA from alignment at C-linearis_contig91:87452..89793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16799.1 ID=mRNA_C-linearis_contig91.16799.1|Name=mRNA_C-linearis_contig91.16799.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2342bp|location=Sequence derived from alignment at C-linearis_contig91:87452..89793- (Chordaria linearis ClinC8C monoicous)
CGGCGCGGTGGCGGCGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGG
CGATTGCTAAGACCGAGCGCGTGAAGGCGTTGAACGTGGACAGCCGGGCT
CTGCAGGACCTACATCAGACGGTGAGGGAGATACCGCAAGAATCGGGGTC
TAAGCGCACCCCCTGGGCCGACTTTTGAAGCTCGACTACTACTGACGAAG
GGTGCTGATACCGAACGACACTTTTTTTGGACAGCTAGCTCTCGACGAGA
TATTTCCAACGCCACCCTATGCGGCACTGACACTCTCTTGTTGCGGAGTA
GTAGCCGAAAGAACTCTGAAAGTCTGTCCGGGGTGTGTGCTTAGACCGCG
ATTCTTTGGTGCTGCTGTACCGCAGGGGTTTTATTGGTTGAGGAGAGGTG
ATGGTTTTGATGCAGTTTGTGTGTGAGCTATATATGTAGGAGGAGGCGTT
TGTTTTTTGTGTTTGTTTTGAGGACGAGCGTGCGCGGGGGAACCGGTTAG
GACAAAAGGGGGTGGCGTGTTCGCGTCTCACTTCATGGTGGTGTGGTATG
GTGTGGTGTGGTGTTACTAAAATGCCCAAGGCTTTGTGTTGTTTGCGGGT
GTGTTCAGTCGCCTGATGAGTTTGCGCGATAGACTACCAGACGGCAACCA
GTCTTGTATTTCCCGGCGACAACGCTGCATCAAAGGACACGACCCTAGCA
TGGTGTGTTGTTCGTCTCCATCATCCAGAAGCTTGCGTGTTTCGTGGGGC
AGCAGACTGGCGATGACGTTGGCGTGATCAGCTGAGCGGTGTGTGCTCAT
AGCTCTCGGCGGCATGGTGGGGCGTGTTGCACTTTGCCGTCATTCCCTTT
GGTGCTGCTTCTCCAAAACTCGAACAGTTGCTCAGACATCAAAGTAACTT
TTAACGGCTGGGCGTGCTTGGCCGATGGCGGAACAACTCCCACCAAAGAT
TTAGCCTCTTCAAGCCCCCCGCACCCACATCAGCACCCCCTACACGCCCC
CCCCTTGAGACCTTTTAATAACCACCGTCCCCCCCCCCTCTAAACCCGCC
GCTCGTTCGAACGACCAGCTTGACGACATGCTGAACGACTGGGACGGCCT
GCCTCTCGGCGGAACGCTAGCAGGGGGGCCAGTGTCCCGACCCGAACCCA
AGACCGCGTCTACTAGTACCAACAGCGAGAGCACCAGGCGGACGGCGCCG
CCGCCGCCACCACCCGCCCCGTCTTCCATCGACCTGTCCTCGGTGGGAGC
ACCAGGGCCATCTGCTGCTGCCGCCGGCGGCGTGATGGACAGCAACAAGT
CTGTTGGCATCGGTGCTGCTGCCTCTGCTTCTGCTCCTCCTTCTGCTTCT
GCAGCCGCCGGCGCTGCTGTATCATCTAGTGTTGGTGGCGGCGGTGGCAG
AGGTGGTAGTGCTACCGTACTCGGAGGCGGCACGGGGGCGCAGGTGGTGT
CCGGGATCGCGGCCTCTTCGCCCGGCGCGGCCGCCAATGGTGGCATCGGA
AACAACGACAAAGGCAGCGGCAGCAGCAGCAGCAGCAGCAACAACAACAA
CAGTGCCTCGAGGGTTTCATCGGAAGGTGGTTGTAGCTCAACTTCAGCCT
CCAGCAGCAGCAACAGCAGCAATTCCAGAAGGAAGAGAAGCTGCAACGGC
AGCGGCGGCAATGCCCCCCCCGCCGCTGCCCCCGCCGCCGCTAGCGGTGG
CGGCCACGACTACTCGGGGGTCCCGTCGAGGAACACACCCCACCACCACC
CTCACAACAACACCACCACCACCACCACCACCACCACCACCAACAACAAC
AACAACAACAGAAGCAAAGTTGGAGCGTCGCCGGCCTACCCGGGGGCGTC
GTGCTTCCCTCCCCCCCTCCCCCGCCCGGCCGGCGCGTTCGGCGTGGTGC
AGGAGGCCCGAGCGTTTGCCCCCGCGCAGCACCTGGCCGTTCTCCAGGCC
TTGCTGAACGGGGAAGAGGAGCAGGGGGACAGAGGCTTCCAAAGCGACAG
CGACAGCGAGAGGGAAGAAGACGGGCCCTGCTAGCGGTGGTGGCGGTGGT
GATGGCTTGGTGGGTGGAGGTCCCGGCGCCGAGTGAGTTGAGGGGGGCGG
AAGTAGCATGCGCACGTAGGGAAATGAAGGCGCTCGAGTTTTTTTATTTT
TTTATTTTATGTTTTTGTGCCCCTTTGACTGGCTCTTGACTGGCCCTACC
GTTGTGCCGTGCGGCGTCCTGGATACTGAAGGTGGTACCTGTTTCTCTGC
GTCGGAATCAAGCGTGCTGTATCCGAACCAGCGAAGGTTTTTTGTCTGCG
GGGGCACGGAGCGGGGGTGGTGGGGGATGGTTTGGCGCTGAT
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Coding sequence (CDS) from alignment at C-linearis_contig91:87452..89793-

>mRNA_C-linearis_contig91.16799.1 ID=mRNA_C-linearis_contig91.16799.1|Name=mRNA_C-linearis_contig91.16799.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at C-linearis_contig91:87452..89793- (Chordaria linearis ClinC8C monoicous)
ATGCTGAACGACTGGGACGGCCTGCCTCTCGGCGGAACGCTAGCAGGGGG
GCCAGTGTCCCGACCCGAACCCAAGACCGCGTCTACTAGTACCAACAGCG
AGAGCACCAGGCGGACGGCGCCGCCGCCGCCACCACCCGCCCCGTCTTCC
ATCGACCTGTCCTCGGTGGGAGCACCAGGGCCATCTGCTGCTGCCGCCGG
CGGCGTGATGGACAGCAACAAGTCTGTTGGCATCGGTGCTGCTGCCTCTG
CTTCTGCTCCTCCTTCTGCTTCTGCAGCCGCCGGCGCTGCTGTATCATCT
AGTGTTGGTGGCGGCGGTGGCAGAGGTGGTAGTGCTACCGTACTCGGAGG
CGGCACGGGGGCGCAGGTGGTGTCCGGGATCGCGGCCTCTTCGCCCGGCG
CGGCCGCCAATGGTGGCATCGGAAACAACGACAAAGGCAGCGGCAGCAGC
AGCAGCAGCAGCAACAACAACAACAGTGCCTCGAGGGTTTCATCGGAAGG
TGGTTGTAGCTCAACTTCAGCCTCCAGCAGCAGCAACAGCAGCAATTCCA
GAAGGAAGAGAAGCTGCAACGGCAGCGGCGGCAATGCCCCCCCCGCCGCT
GCCCCCGCCGCCGCTAGCGGTGGCGGCCACGACTACTCGGGGGTCCCGTC
GAGGAACACACCCCACCACCACCCTCACAACAACACCACCACCACCACCA
CCACCACCACCACCAACAACAACAACAACAACAGAAGCAAAGTTGGAGCG
TCGCCGGCCTACCCGGGGGCGTCGTGCTTCCCTCCCCCCCTCCCCCGCCC
GGCCGGCGCGTTCGGCGTGGTGCAGGAGGCCCGAGCGTTTGCCCCCGCGC
AGCACCTGGCCGTTCTCCAGGCCTTGCTGAACGGGGAAGAGGAGCAGGGG
GACAGAGGCTTCCAAAGCGACAGCGACAGCGAGAGGGAAGAAGACGGGCC
CTGCTAGATGCTGAACGACTGGGACGGCCTGCCTCTCGGCGGAACGCTAG
CAGGGGGGCCAGTGTCCCGACCCGAACCCAAGACCGCGTCTACTAGTACC
AACAGCGAGAGCACCAGGCGGACGGCGCCGCCGCCGCCACCACCCGCCCC
GTCTTCCATCGACCTGTCCTCGGTGGGAGCACCAGGGCCATCTGCTGCTG
CCGCCGGCGGCGTGATGGACAGCAACAAGTCTGTTGGCATCGGTGCTGCT
GCCTCTGCTTCTGCTCCTCCTTCTGCTTCTGCAGCCGCCGGCGCTGCTGT
ATCATCTAGTGTTGGTGGCGGCGGTGGCAGAGGTGGTAGTGCTACCGTAC
TCGGAGGCGGCACGGGGGCGCAGGTGGTGTCCGGGATCGCGGCCTCTTCG
CCCGGCGCGGCCGCCAATGGTGGCATCGGAAACAACGACAAAGGCAGCGG
CAGCAGCAGCAGCAGCAGCAACAACAACAACAGTGCCTCGAGGGTTTCAT
CGGAAGGTGGTTGTAGCTCAACTTCAGCCTCCAGCAGCAGCAACAGCAGC
AATTCCAGAAGGAAGAGAAGCTGCAACGGCAGCGGCGGCAATGCCCCCCC
CGCCGCTGCCCCCGCCGCCGCTAGCGGTGGCGGCCACGACTACTCGGGGG
TCCCGTCGAGGAACACACCCCACCACCACCCTCACAACAACACCACCACC
ACCACCACCACCACCACCACCAACAACAACAACAACAACAGAAGCAAAGT
TGGAGCGTCGCCGGCCTACCCGGGGGCGTCGTGCTTCCCTCCCCCCCTCC
CCCGCCCGGCCGGCGCGTTCGGCGTGGTGCAGGAGGCCCGAGCGTTTGCC
CCCGCGCAGCACCTGGCCGTTCTCCAGGCCTTGCTGAACGGGGAAGAGGA
GCAGGGGGACAGAGGCTTCCAAAGCGACAGCGACAGCGAGAGGGAAGAAG
ACGGGCCCTGCTAG
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