mRNA_C-linearis_contig91.16797.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16797.1
Unique NamemRNA_C-linearis_contig91.16797.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16797.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.190e-10
Identity = 77/213 (36.15%), Postives = 109/213 (51.17%), Query Frame = 1 
Query:  640 IVRELLAAGAHLHLVDVMGRVALHIAAEHGHTDAISAFLSAAPATLNRVSEPPNIRPVRLDTAVCGSYRKIAAVRLLLSAGAMGPEYSLEKSAKCPVSPAVGRVQEELLCILLSAKGLAVVRRGESLNTTYFHAASDLQLACVWLK*FQNAKMLDLVLSLEGEERPAYWA-TR-SEPFN---LLHWAVGFGNIQAVSVLLCSRGT*GSDHLRW 1263
            IVRELL  GA+ +L       ALH AA+ GHT+  +  L+AAPATLN V+E   + P  L TA   S+ +  AV  LLS GA   +   +++    +  AV    + LL +LL  KGL  V   +S+            + C   K     + L+L+LS+EGEER  +WA TR S+ ++   +LH+A  F ++ A S   CS    G    RW
Sbjct:   68 IVRELLKWGANPNLRGGPYGSALHTAAKEGHTNLFTTLLAAAPATLNLVNEQ-GLTP--LGTAT--SFGRHKAVTCLLSLGASDRQV-FQETRSGSLQEAVVAGHDTLLSLLLG-KGLEAVGGLDSIPDA---------MGCAVTK--SRTRTLNLLLSVEGEERRTFWARTRVSDDYSGKCMLHFAAEFTSLSARSS--CSSRP-GRTKQRW 259
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BLAST of mRNA_C-linearis_contig91.16797.1 vs. uniprot
Match: D8LDZ2_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.210e-6
Identity = 47/129 (36.43%), Postives = 63/129 (48.84%), Query Frame = 2 
Query:  206 SRLTRLLNAISTFGETTMTQDVENALAAGASPDGSRGLDQRPLVLAAAGDDQASHDLVRFLIENWLGRSGCRRSDPTLPNDTRTSMVEG-TRPLQFAIRQGNIDTVRTLLHAGADPNAADRTGDTPLIL 589
            S+  RLL+ +    E    Q     L AGA+ DG+      PL LAA   ++   D+++ LI+N     G    D      T     EG T PL  A+   N+D +R LL AGADPN AD  G TPL++
Sbjct:    5 SKELRLLHHV----EKGSLQGAIEMLKAGANADGTSEAATSPLFLAA---NRGRIDILKLLIDNGADLDGTSSLDKFADGFTGNLPFEGGTTPLHGALAGENLDALRLLLLAGADPNLADGKGCTPLMM 126
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME7_ECTSI4.190e-1036.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDZ2_ECTSI5.210e-636.43Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:63437..64983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog2880.D7FVG9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001040.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1547
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16797.1prot_C-linearis_contig91.16797.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 63693..64151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.3573787-UTR-C-linearis_contig91:63436..636921622930780.3573787-UTR-C-linearis_contig91:63436..63692Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 63437..63692 +
1690881246.3290253-UTR-C-linearis_contig91:63436..636921690881246.3290253-UTR-C-linearis_contig91:63436..63692Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 63437..63692 +
1622930780.3920994-UTR-C-linearis_contig91:64151..649831622930780.3920994-UTR-C-linearis_contig91:64151..64983Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 64152..64983 +
1690881246.3649511-UTR-C-linearis_contig91:64151..649831690881246.3649511-UTR-C-linearis_contig91:64151..64983Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 64152..64983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.3754861-CDS-C-linearis_contig91:63692..641511622930780.3754861-CDS-C-linearis_contig91:63692..64151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 63693..64151 +
1690881246.3537116-CDS-C-linearis_contig91:63692..641511690881246.3537116-CDS-C-linearis_contig91:63692..64151Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 63693..64151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16797.1

>prot_C-linearis_contig91.16797.1 ID=prot_C-linearis_contig91.16797.1|Name=mRNA_C-linearis_contig91.16797.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=153bp
MTQDVENALAAGASPDGSRGLDQRPLVLAAAGDDQASHDLVRFLIENWLG
RSGCRRSDPTLPNDTRTSMVEGTRPLQFAIRQGNIDTVRTLLHAGADPNA
ADRTGDTPLILAARVSISERVHAHLLQRLCGNCSRQGLISTWSTSWGEWR
CT*
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mRNA from alignment at C-linearis_contig91:63437..64983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16797.1 ID=mRNA_C-linearis_contig91.16797.1|Name=mRNA_C-linearis_contig91.16797.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1547bp|location=Sequence derived from alignment at C-linearis_contig91:63437..64983+ (Chordaria linearis ClinC8C monoicous)
GTTTCTACGGCTGGCTACCACCCCACACGCTCTCTGTGTGTCTTTGTGCA
TACTCTTTGTGTAGCCGTCCTCTCAACCTTGGTCTCAACTCCGATTTATG
CTCCTGCCGCACCCACGGGTGAGTCAAATGCCTTCAAATCCACAAAAGCC
TTCCCGATGATAACTGGCTCGGTTCCTCGGCGGAGAAGTGACCCGGAGCT
TGGGCAGCAGGCTCACCCGGCTGCTGAACGCTATTTCTACATTCGGCGAG
ACCACGATGACACAAGACGTGGAAAATGCGCTAGCAGCAGGTGCCAGCCC
CGATGGATCCCGCGGTCTAGACCAGAGACCCCTCGTGCTGGCTGCTGCTG
GAGATGACCAGGCTTCACACGATTTGGTCCGCTTCCTCATCGAGAACTGG
CTGGGCAGATCCGGATGCAGGCGTTCGGACCCAACTCTACCTAACGACAC
CCGTACTTCGATGGTGGAGGGGACCAGGCCGCTCCAATTTGCTATCAGGC
AGGGAAATATCGACACCGTGAGAACCCTTCTTCATGCAGGTGCTGACCCG
AACGCCGCTGACAGAACAGGCGACACCCCGCTCATTTTGGCCGCCCGTGT
TTCCATCTCGGAGCGAGTACACGCTCACCTGCTGCAACGATTGTGCGGGA
ACTGCTCGCGGCAGGGGCTCATCTCCACTTGGTCGACGTCATGGGGAGAG
TGGCGCTGCACATAGCAGCAGAGCATGGGCACACCGACGCGATCAGCGCG
TTTTTGTCGGCGGCGCCCGCAACGCTGAACCGTGTCAGCGAGCCACCAAA
TATCCGGCCAGTCAGGCTTGACACCGCTGTGTGTGGCAGCTACCGAAAGA
TAGCTGCGGTGCGCCTACTGTTGTCGGCAGGCGCGATGGGGCCAGAGTAT
TCTTTGGAGAAATCAGCCAAGTGCCCGGTTTCGCCAGCTGTGGGACGGGT
TCAGGAAGAGCTATTATGCATCCTGTTGTCAGCGAAAGGCCTGGCGGTGG
TGCGCCGTGGCGAGTCGCTCAACACGACTTATTTCCATGCTGCCTCGGAT
CTGCAGCTAGCTTGCGTCTGGCTGAAGTGATTCCAGAATGCGAAAATGCT
CGACCTGGTGCTGTCCTTGGAGGGAGAAGAGAGGCCTGCGTACTGGGCTA
CGCGCTCTGAACCTTTTAATTTGCTGCACTGGGCCGTTGGGTTTGGTAAC
ATCCAAGCCGTGAGTGTGCTGCTTTGCAGTCGGGGCACATGAGGAAGCGA
TCATCTACGATGGTATGGCCACAAGACGTCTTCTCGGACCCGAAGTTCAA
CATTGTGATTCCCTGGCTGGTCCTCGCCGCGCGCTTGAACGGGAACCCGC
GTTTCGTGCACGATCGTGGGCGTGGCGAGTGGATGCCGGTGCTACTGCTG
CTACTGCTGCTACTGCTGCTACTGCTGCTGCTACCGTTGCAACGGCCGCT
CTCGCTGGTACCATGCCCTCGCCGCTCACCACAGCGCAAAGTGGCCTGCT
TGGTGTCCGGATCTTCAGGCCCAGGACCATGAAGTTCTTTGTGAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig91:63437..64983+

>mRNA_C-linearis_contig91.16797.1 ID=mRNA_C-linearis_contig91.16797.1|Name=mRNA_C-linearis_contig91.16797.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at C-linearis_contig91:63437..64983+ (Chordaria linearis ClinC8C monoicous)
ATGACACAAGACGTGGAAAATGCGCTAGCAGCAGGTGCCAGCCCCGATGG
ATCCCGCGGTCTAGACCAGAGACCCCTCGTGCTGGCTGCTGCTGGAGATG
ACCAGGCTTCACACGATTTGGTCCGCTTCCTCATCGAGAACTGGCTGGGC
AGATCCGGATGCAGGCGTTCGGACCCAACTCTACCTAACGACACCCGTAC
TTCGATGGTGGAGGGGACCAGGCCGCTCCAATTTGCTATCAGGCAGGGAA
ATATCGACACCGTGAGAACCCTTCTTCATGCAGGTGCTGACCCGAACGCC
GCTGACAGAACAGGCGACACCCCGCTCATTTTGGCCGCCCGTGTTTCCAT
CTCGGAGCGAGTACACGCTCACCTGCTGCAACGATTGTGCGGGAACTGCT
CGCGGCAGGGGCTCATCTCCACTTGGTCGACGTCATGGGGAGAGTGGCGC
TGCACATAGATGACACAAGACGTGGAAAATGCGCTAGCAGCAGGTGCCAG
CCCCGATGGATCCCGCGGTCTAGACCAGAGACCCCTCGTGCTGGCTGCTG
CTGGAGATGACCAGGCTTCACACGATTTGGTCCGCTTCCTCATCGAGAAC
TGGCTGGGCAGATCCGGATGCAGGCGTTCGGACCCAACTCTACCTAACGA
CACCCGTACTTCGATGGTGGAGGGGACCAGGCCGCTCCAATTTGCTATCA
GGCAGGGAAATATCGACACCGTGAGAACCCTTCTTCATGCAGGTGCTGAC
CCGAACGCCGCTGACAGAACAGGCGACACCCCGCTCATTTTGGCCGCCCG
TGTTTCCATCTCGGAGCGAGTACACGCTCACCTGCTGCAACGATTGTGCG
GGAACTGCTCGCGGCAGGGGCTCATCTCCACTTGGTCGACGTCATGGGGA
GAGTGGCGCTGCACATAG
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