mRNA_C-linearis_contig90.16792.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16792.1
Unique NamemRNA_C-linearis_contig90.16792.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.420e-124
Identity = 191/252 (75.79%), Postives = 209/252 (82.94%), Query Frame = 2 
Query:  452 MHITGGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQPTGVS-RGAAGAAP 1204
            MH+ GGVQ+GVQ VHH TGLPWWATI VATI VK+SLLPVVVYQA HMDRMR AWPEIQILR +LAT+LEEIPQ RVL RW+KYK+FFSG RG+LGLHG HL G+FATPLVNLPVF+ FVWSIRGMLRD TVPGLDTG          T  SLMLPIIGTL TYT+LE+ KMKGATGW+KFFQDGMQTF+ILMLPW STFPQ    GVFMYWIPS+ FQMGQTY MKNN VRE +GL+P G+  R AAGA P
Sbjct:    1 MHVMGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRGYLATSLEEIPQERVLERWRKYKVFFSGARGVLGLHGTHLRGMFATPLVNLPVFITFVWSIRGMLRDGTVPGLDTGEA-------DTVHSLMLPIIGTLCTYTSLEIVKMKGATGWMKFFQDGMQTFIILMLPWVSTFPQ----GVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPLGLPPREAAGATP 241
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 1.820e-116
Identity = 194/298 (65.10%), Postives = 214/298 (71.81%), Query Frame = 2 
Query:  419 MYLLHGVLTTGMHITGGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEE----------------------IPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTG------------GILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQPTGVS-RGAAGAAPA 1207
            MYLL GVLT G+H+ GGVQ+GVQ VHH TGLPWWATI VATI VK+SLLPVVVYQA HMDRMR AWPEIQILR +LAT+LEE                      IPQ+RVL RW+KYK+FFSG RGILGLHG HL G+FATPLVNLPVF+ FVWSIRGMLRD T PGLDTG            GILWFVDLTV DSSLMLPIIGTL TYT+LE+ KMKGATGWIK  +       + + P    F +    GVFMYWIPSS FQMGQTY MKNN VRE +GL+P G+  R  AGA PA
Sbjct:    1 MYLLKGVLTAGVHVLGGVQSGVQAVHHTTGLPWWATIAVATIGVKISLLPVVVYQAGHMDRMRAAWPEIQILRSYLATSLEEGLVSRPIFLVQPPRLCHHRRCQIPQQRVLERWRKYKVFFSGARGILGLHGTHLRGMFATPLVNLPVFITFVWSIRGMLRDGTAPGLDTGEAVTVAPATKLGGILWFVDLTVPDSSLMLPIIGTLCTYTSLEIVKMKGATGWIKLER-------LAVTPSPRLFTRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPLGLPPREDAGATPA 291
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A024TNQ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNQ9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.100e-29
Identity = 83/248 (33.47%), Postives = 127/248 (51.21%), Query Frame = 2 
Query:  482 VQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEI-QILRDHLATTL---EEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATGWIKFFQ---DGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQPTGVSRGAAGAAP 1204
            ++ VH  TGLPWWAT GV  I V+ +L P++VYQ +  +RM  A  E+ ++ + +L   +     IPQ++V A    +++ + G +     +  H     ATPL+ +P F+L  +S R ++R   V GLDTGG+  F +L   D +L+LP +    TY   EL      T  +K  Q   D  Q   +L  P+    PQ    G+F YW+ SS     QT A++  ++R  +GL+    S  AA   P
Sbjct:   65 IEAVHVTTGLPWWATFGVTAIAVRGTLFPLMVYQIKATERMANASKEMREVWKSYLYARMFLPPAIPQKQVEA----FQLMYKGVKLTWEKYQTHPVKCVATPLLQIPTFLLMAYSTRELVRSGRVEGLDTGGVWMFQNLVEADGTLILPALAVGCTYLNFELM----GTSKVKLIQALKDKFQYIPLLSFPFICQMPQ----GIFFYWLASSWCSFAQTMALRQPSIRRALGLRDITASSLAAAPVP 300
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: W4G8S7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.260e-28
Identity = 81/238 (34.03%), Postives = 117/238 (49.16%), Query Frame = 2 
Query:  482 VQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRM-------RMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATGWIKFFQ---DGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQ 1165
            ++ VH  TGLPWWAT G   I V+ +L P++VYQ +  +RM       R  W      R  L      IPQ++V A    +++ + G +     H  H     ATPLV +P F+L  +S R ++R   V GLDTGG+  F +L   DS+ +LP +    TY   EL      T  IK  Q   +  Q   +L  P+    PQ    G+F YW+ SS     QT A++  ++R  +GL+
Sbjct:   68 IEAVHVTTGLPWWATFGATAIAVRGTLFPLMVYQIKATERMAEAAKDTREVWKAYLYARMFLPPA---IPQKQVEA----FQLMYKGVKLTWEKHNTHPIQCVATPLVQIPTFLLMAYSTRELVRSGKVDGLDTGGVWLFQNLVEADSTFILPALAVGCTYLNFELM----GTSKIKLLQSLKNKFQYIPLLSFPFICQIPQ----GIFFYWLASSWCSFAQTMALRQPSIRRALGLK 290
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A1X2HWI0_SYNRA (60Kd inner membrane protein-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HWI0_SYNRA)

HSP 1 Score: 123 bits (309), Expect = 2.880e-27
Identity = 78/239 (32.64%), Postives = 122/239 (51.05%), Query Frame = 2 
Query:  464 GGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLAT---TLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATG-WIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQP 1168
            G ++AG++ VH  TGLPWW +I VATI V+  LLP++V   R+  ++    PE+  +  +L     T + +   +  A  QK          +   +G H       PL+ +PV + F  ++R M  D  VPGL TGG+ WF DLT  D   +LP++        LE     GA     K  ++  +   I M+P+ +  P    +GVF+YW+ S+ F +GQ  A+KN T+R+ + + P
Sbjct:   48 GALEAGLEAVHVYTGLPWWGSIAVATIAVRTLLLPLMVKIQRNNAKLMNINPEVTRIMGNLKAAQQTGDAVAVGKYSAEIQK----------LFTENGCHPMKSLGLPLIQMPVMISFFMALRAM-ADLPVPGLLTGGLGWFTDLTAKDPYYVLPVVSAAGVMAILEAGSEVGAANPQSKTMKNLFRGLTIAMVPFTAWMP----SGVFVYWLTSNTFSIGQILALKNPTIRKALNIPP 271
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A485L9H5_9STRA (Aste57867_18210 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9H5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.280e-27
Identity = 78/235 (33.19%), Postives = 114/235 (48.51%), Query Frame = 2 
Query:  482 VQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRM-------RMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQ 1165
            ++ VH  TGLPWWAT G+  I V+ SL P++VYQ +  +RM       R  W      R  L      IPQ+++ A      +F  G +     H  H     ATPL+ +P F+L  +S R ++R   + GLDTGG   F +L   DS+ +LP +    TY   EL   K     + F ++ +Q   +L  P+    PQ    G+F YWI SS     Q  A++   +R  +GL+
Sbjct:   68 IEAVHTTTGLPWWATFGLTAIAVRGSLFPLLVYQIKATERMGNAGSEMRSMWKSFMYARMFLPPA---IPQKQLEA----LVLFHKGLKLSWEKHSTHPIQCVATPLIQVPSFILMAYSTREIIRSGKMDGLDTGGFWMFQNLMEADSTFILPALAVGCTYLNFELMG-KSQIKIMPFLKNSLQYIPLLSFPFICQLPQ----GIFFYWIASSWCSFAQAAALRQPAIRSAVGLK 290
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A7S3H9D9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9D9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.480e-27
Identity = 75/232 (32.33%), Postives = 115/232 (49.57%), Query Frame = 2 
Query:  470 VQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELA-KMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGL 1162
            +Q+ +  +H  T +PWWATIG++T+ V+ +LLP+V  Q     ++ +A PE+  L       L  +       R +   +F  G    L ++      L   PL+N+ VF+ FV+S+R +L       L  GG LWFVDL   D++  LP      TY  LELA +           +D  Q+ +IL LP+ +  P    AGVF YWIPSS F + Q+  +K    ++   +
Sbjct:   61 IQSSMLALHTATDIPWWATIGLSTVFVRTALLPLVRSQIIASKKLALAMPEMNYLYKLQLRRLNGVKVTSTYERLRIISVFVKGVNACLKVYDVPKRKLIGYPLMNIGVFMTFVYSVRDLLLKTQDYSLLDGGTLWFVDLASKDATFGLPFAALGLTYLGLELAFRQNSQDNLFSRLKDYGQSGIILFLPFVTQLP----AGVFCYWIPSSIFAITQSQILKGPYAQKLFNI 288
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A8H7EUD2_9FUNG (Mitochondrial inner membrane protein oxa1l n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EUD2_9FUNG)

HSP 1 Score: 125 bits (315), Expect = 1.860e-26
Identity = 76/236 (32.20%), Postives = 123/236 (52.12%), Query Frame = 2 
Query:  464 GGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKG-ATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGLQP 1168
            GG++A ++ +H  +GLPWW TI +AT+ V+++LLPV+V   R+  ++    PE+  + D+L T   +     +     + +  F       G H     GL   PLV +PV V F  ++RGM  +  VPGL  GG+ WF DLT  D   +LP++        LE     G A    K  ++  +   ++M+P+ +  P +    VF+YW  S+ F +GQ  A+KN T+R+ + + P
Sbjct:  336 GGLEAMLEAIHVYSGLPWWGTIALATVTVRLALLPVMVKIQRNNAKLMNINPEVTRIMDNLKTAQAQGDTHSISKYSAEIQTLFKSN----GCHPLKSLGL---PLVQMPVMVSFFLALRGM-AELPVPGLQNGGMWWFQDLTAQDPYYILPVVSAAGMMAVLEAGTEAGMANPQSKSMKNFFRAITVIMVPFTAWMPSS----VFVYWATSNVFSIGQILALKNPTIRKALNIPP 559
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A8H7S8I9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8I9_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 1.080e-25
Identity = 72/234 (30.77%), Postives = 121/234 (51.71%), Query Frame = 2 
Query:  464 GGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELAKMKGATG-WIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPSSAFQMGQTYAMKNNTVREFIGL 1162
            GG++A ++ +H  +GLPWW +I  AT+ V+++LLP+++   R+  +M    PE+  L ++L T  ++     V     KY    +  + +   HG H       P++ +PV + F  ++R M  D  VPGL TGG+ WF DLT  D   +LP+         LE     GA     K  ++  +   ++M+P+ +  P    +GVF+YWI S+A  + Q  A+KN  +R+   +
Sbjct:   96 GGLEAMLEAIHVYSGLPWWGSIAAATVVVRLALLPLMIKIQRNNAKMMNLNPEVSRLMENLKTAQQQGDSVAV----GKYS---NEMQSLFKKHGCHPMKSLGLPIIQMPVMISFFMALRAM-ADLPVPGLQTGGLGWFTDLTAQDPYYVLPVASAAGVMAILEAGSEVGAANPQSKTMKNFFRGMAVVMIPFTAWMP----SGVFVYWITSNAVSITQILALKNPAIRKAFDI 317
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BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Match: A0A482RS99_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS99_9ARCH)

HSP 1 Score: 116 bits (290), Expect = 2.910e-25
Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 2 
Query:  458 ITGGVQAGVQGVHHLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHLATTLEEIPQRR----------VLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPVFVLFVWSIRGMLRDATVP-GLDTGGILWFVDLTVTDSSLMLPIIGTLFTYTTLELA---KMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPS 1096
            + G VQ  +   H  TGLPWW+TI ++T+ +++ LLP+V  Q+    ++  A PE+ +L       + E    +          + + +Q       G +  L LH   +  L   PL++L +F LFV+S+R ++    +  GL+ GG+ WF DL+  D SL+LP+     +Y  ++ A        +G ++  +DG Q+ ++L LP  ST P     GVF YWIP+
Sbjct:   36 LIGLVQGALVAAHDFTGLPWWSTIALSTVTLRIGLLPLVHQQSLVSRKLAKAMPELSLLVQLYRQKVGEARSMKKAHLSPGPDNIQSLFQLTSSLRKGIKATLALHDIRMLELLGYPLIHLYLFCLFVFSVRDLVLHGPLDLGLEQGGLGWFRDLSERDGSLLLPLTALSLSYANIDTALNYNSSNKSGALQLLRDGAQSLLLLSLPMVSTLP----CGVFCYWIPN 258
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMT8_ECTSI1.420e-12475.79Oxa1-like homolog, mitochondrial inner membrane in... [more]
A0A6H5JKU0_9PHAE1.820e-11665.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024TNQ9_9STRA5.100e-2933.47Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4G8S7_9STRA6.260e-2834.03Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1X2HWI0_SYNRA2.880e-2732.6460Kd inner membrane protein-domain-containing prot... [more]
A0A485L9H5_9STRA4.280e-2733.19Aste57867_18210 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3H9D9_9STRA6.480e-2732.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8H7EUD2_9FUNG1.860e-2632.20Mitochondrial inner membrane protein oxa1l n=1 Tax... [more]
A0A8H7S8I9_9FUNG1.080e-2530.77Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A482RS99_9ARCH2.910e-2530.84Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:635254..640091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue1.3e-102
Seed eggNOG ortholog2880.D7FMT8
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
Ec32 ortholog descriptionOxa1-like homolog, mitochondrial inner membrane insertase
Ec32 orthologEc-21_000200.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Exons6
Model size2177
Cds size1260
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16792.1prot_C-linearis_contig90.16792.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 635300..639220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.1157417-UTR-C-linearis_contig90:635253..6352991622930778.1157417-UTR-C-linearis_contig90:635253..635299Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 635254..635299 +
1690881245.2805994-UTR-C-linearis_contig90:635253..6352991690881245.2805994-UTR-C-linearis_contig90:635253..635299Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 635254..635299 +
1622930778.2594445-UTR-C-linearis_contig90:639220..6400911622930778.2594445-UTR-C-linearis_contig90:639220..640091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 639221..640091 +
1690881245.370402-UTR-C-linearis_contig90:639220..6400911690881245.370402-UTR-C-linearis_contig90:639220..640091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 639221..640091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.1349697-CDS-C-linearis_contig90:635299..6359171622930778.1349697-CDS-C-linearis_contig90:635299..635917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 635300..635917 +
1690881245.293423-CDS-C-linearis_contig90:635299..6359171690881245.293423-CDS-C-linearis_contig90:635299..635917Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 635300..635917 +
1622930778.1552248-CDS-C-linearis_contig90:636713..6367961622930778.1552248-CDS-C-linearis_contig90:636713..636796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 636714..636796 +
1690881245.3046718-CDS-C-linearis_contig90:636713..6367961690881245.3046718-CDS-C-linearis_contig90:636713..636796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 636714..636796 +
1622930778.1746483-CDS-C-linearis_contig90:637346..6374621622930778.1746483-CDS-C-linearis_contig90:637346..637462Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 637347..637462 +
1690881245.319357-CDS-C-linearis_contig90:637346..6374621690881245.319357-CDS-C-linearis_contig90:637346..637462Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 637347..637462 +
1622930778.195935-CDS-C-linearis_contig90:637761..6378891622930778.195935-CDS-C-linearis_contig90:637761..637889Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 637762..637889 +
1690881245.3328056-CDS-C-linearis_contig90:637761..6378891690881245.3328056-CDS-C-linearis_contig90:637761..637889Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 637762..637889 +
1622930778.2141356-CDS-C-linearis_contig90:638470..6385481622930778.2141356-CDS-C-linearis_contig90:638470..638548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 638471..638548 +
1690881245.3495502-CDS-C-linearis_contig90:638470..6385481690881245.3495502-CDS-C-linearis_contig90:638470..638548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 638471..638548 +
1622930778.230294-CDS-C-linearis_contig90:638983..6392201622930778.230294-CDS-C-linearis_contig90:638983..639220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 638984..639220 +
1690881245.3615768-CDS-C-linearis_contig90:638983..6392201690881245.3615768-CDS-C-linearis_contig90:638983..639220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 638984..639220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16792.1

>prot_C-linearis_contig90.16792.1 ID=prot_C-linearis_contig90.16792.1|Name=mRNA_C-linearis_contig90.16792.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=420bp
MIACLRARGLSRGLSHAARRRPPFVHPSPLPSSWVVRFSSTAEDNSSSTN
SGSPSSSSGDSSSSSVGGAAADGSATPPPESGTSGFDPSSLIPPPQSTEP
WSSAAPEFVADLPGTVSSLVGDAGMYLLHGVLTTGMHITGGVQAGVQGVH
HLTGLPWWATIGVATICVKVSLLPVVVYQARHMDRMRMAWPEIQILRDHL
ATTLEEIPQRRVLARWQKYKIFFSGTRGILGLHGAHLPGLFATPLVNLPV
FVLFVWSIRGMLRDATVPGLDTGGILWFVDLTVTDSSLMLPIIGTLFTYT
TLELAKMKGATGWIKFFQDGMQTFVILMLPWASTFPQASAAGVFMYWIPS
SAFQMGQTYAMKNNTVREFIGLQPTGVSRGAAGAAPAGQGAKAVDDSSSP
AGQKSLTAGVLPGKKMSKA*
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mRNA from alignment at C-linearis_contig90:635254..640091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16792.1 ID=mRNA_C-linearis_contig90.16792.1|Name=mRNA_C-linearis_contig90.16792.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4838bp|location=Sequence derived from alignment at C-linearis_contig90:635254..640091+ (Chordaria linearis ClinC8C monoicous)
GGCTGAACTGCGCACAACGCCCGCGTGTCAGCGTTTCCAGGGACCGATGA
TTGCATGCCTGCGCGCAAGAGGTCTATCAAGAGGCCTGTCTCATGCTGCT
CGACGGCGCCCTCCGTTTGTGCACCCCAGCCCCCTCCCGAGCTCCTGGGT
CGTCAGGTTCTCTTCCACAGCAGAGGATAACAGCAGCAGCACCAACAGCG
GCAGCCCTAGTAGCAGTAGCGGCGACAGTAGCAGTAGTAGCGTTGGTGGT
GCAGCAGCTGATGGCTCAGCCACACCTCCTCCAGAGTCAGGAACCTCCGG
CTTCGACCCGTCTTCTTTGATACCACCGCCACAAAGCACCGAGCCTTGGA
GCTCAGCAGCTCCAGAGTTTGTAGCGGACTTGCCCGGGACAGTCAGCTCG
TTGGTGGGGGATGCGGGGATGTACCTGCTGCACGGGGTGCTCACCACCGG
GATGCACATCACAGGGGGCGTGCAGGCCGGGGTGCAGGGGGTCCACCACT
TGACGGGGCTGCCTTGGTGGGCTACGATAGGCGTGGCGACGATCTGCGTC
AAGGTTTCCCTGTTGCCCGTGGTGGTGTATCAGGCCAGACACATGGACCG
CATGAGGATGGCGTGGCCGGAGATTCAGATCCTGAGGGACCACCTCGCTA
CGACGCTAGAGGAGGTAGGCTTGGTTTTCGCCTGGCGTTGTGCCCCAGAG
ATATGATATGATGCTGTTGCTTTTGCAGTTCTCTCCACTTCAACGCCGAA
CAGCGCGTTTACCATTGGTTGGTGCCTGCCAGGTTGACGTGCTGACGGTT
ACGTCTGTTTCTTTGTCGATGCCAACCCTGACCTGCCCCTGCCTCTACTA
CTGCTGTAGGTTCATGTTCATCGCTGTCGTATGGCGCGCCTGATATTCCG
GGGCCACGAAACGTAGTCGTGACACCCGCTGCTGCTTGTAGGCAAATCTA
AAGCTCATTGGCCGCTTAGGTTTGCTTCAACCCTCTTCTTGCGGCACGAT
GTATTCAGTGCAATGCGGCACATAAGCTAACGCGGTTGCGCTCACAGCCG
CCCGTGTTTTGGCCATTCCGCGAGCTTTTGGTTCCATAGATTAGTTGGGT
CCTGTTTGCGTGCCACAAATCCCAAATCCCTGCCATTTAAGCTAGCCTGC
TTCACTACTAGAAGTACGAAGTATAATGGTAACGGGCCGAGCAGCGACGG
CCATCTTGTTCTTGACATGGTTCATGCCTTTCCACTATTTCAGTCTAGGC
GGTGTCTATTGAACGACGACGCCTTCAATTGTTCGATGGTTCATCACATC
GCTCTGTTCGGTACTTGATGACCTTGGTCAGGAACCTACATTCATGTTAG
TGCCCGTGTAGACACTCATTAACCGTGGCCTGGGTCGAATCGTCTGACGT
CTAACGTCCACGTCCACGCGTGTTCCGGGCAACTGGCGACGCCATTCATC
CACCCATCAGATTCCGCAACGTCGTGTTCTGGCGCGATGGCAGAAGTACA
AGATATTCTTTTCGGGGACTCGAGGGATACTGGGACTGCATGGGTGATAG
TTGAAATTAGAATTGGAACTACCATGACTTCCTTCCGTGACTGCAATGCT
TGCATGGATACATACTGCAAACGAGGAAGGAGGGGCGGGGCAGGAAAACT
GGGCAGGGCAGAATTTGAAGGGTAGAGGTACGGGAAATGTTTATTATCGC
CAACAACAAGAGCAAACGTCTGGGTCGGAGTTGATGCAGTACAAGTACCG
TGCAATAATCCAGCAGTGCAGTTAAGGTAACGCCGACGGGACACGTGACA
CGTCCCCATGTCACCGGCGCGCTTGTCTACGGTGAAGACGTGTCACCGGC
GCGCAGCTCCACTTTGGTTGTGGAGCAAAGTATTAATAGTTATATTGGAG
GCACATGCGTAGGTATCTGGAACGATGGTCCTCCGCTGCAAGGGAGCGGT
GCACACGTACACGTAGAGCCCTGTTGCTGTTGCTGTTGCTGTTGCTGTTG
CTGTTGCTGTTGAGCATTCATGTAGCGTCGCAGCCTTTGTTCAAACTCTT
TAACTCTGTCACCCCCCGGTCGCTTTGTTGCACGTGCGTGCAGGGCTCAC
TTGCCGGGGCTATTCGCGACACCGCTGGTTAACCTACCGGTATTTGTGCT
GTTCGTCTGGTCCATTCGCGGGATGCTAAGAGACGCGACAGTGCCTGGGC
TCGATACAGGTGATGACACTCTACAGAGTACCTCCACAACAAACGTTTAC
GTTTCATTTTCGAGACCTTCGCACCCATCGAGTTCGGCAACGTTGAAATG
TCGCGTCTTTTTGGAAACGGACGGTGTCGACACAAGAGGCCATGTCTCGC
GAGCCCTTGCTCGAAGATGAGCTCTTGGCAGGTCAGATCTCTGCTTCTGG
CGTCCGTCCCAGCTCGACAAATGCCCGCCTCTCTCCTTTACTGTTACTGC
TTTACTGTTTTCCTGTCTCTCTTGTCGTGGTCGCGGTGGTCCTCCCCTCT
GTCCTCAGGTGGAATCCTGTGGTTCGTGGACCTGACAGTGACGGATTCGA
GCCTAATGCTGCCCATCATTGGGACGTTGTTCACCTACACCACCTTGGAG
TTGGCTAAAATGAAGGGCGCCACGGGATGGATAAAGGTTCGTGTTATTGC
TTTTGATTGTCTAGTGGTAAATCAGCAGCTTGAGGTTGACTTGAAATCGA
TTATTGGTGCAATGCTCAATGCTAGAATACTGGATGATGTAAAATTTCGA
TCACGGGTGGAAATTTGGAACCTGAGGGTTAGGGTTCCAGGTTGGCGAAC
ATGGAGAAGGCAAAGCCGTGTGGTCATTGGAGAACTGCGGCGTGACCCGT
GCGACCAACGGTGGAGGCTTTCATGTCCTCCCATGGCTTAGAGTCTTTGC
TTACTGTAGTAGTCGGGGTGTTCAAGATGGCAATTACGCCACCAACTACA
CGCTGTCTGCTCTCCGTTACACTCGTCGCCTTGACTCGCATCTCTCTTCT
TCTCTCGCTGTCTGTTGTTTTTGTCGGGCATGTTGCTTGCTGTCTGCTGT
TTGCTGTGGCGATCGTTTTGTTTTGCCATATATCTTCTGATATGATGTGA
TATGATATGATATGATATGATATAATATGATATTTTATGATGTGGTATTA
TATGATATAATGTGATATTTTATGATACGATATGATATGCTATTATATGA
TGCGTACAATACAACAGTTCTTCCAAGATGGGATGCAGACGTTTGTCATC
CTGATGCTCCCCTGGGCCAGCACCTTCCCGCAGGCAAGTGCTGCCGTGGC
ATCATGCAATCGTTGTCTCACTTTGCCTTTGCTCAAGAACATGCATACCG
ATTGGTTGGTCTAGTACACGTTCTGTTTGGATCTCATGTATGACACTACT
GCTGTCCTACGAAATACTTGTCTGAGAGACATGGCTTGGCAGCTGCTCCC
ACACAAGCTAGGTACACACGGCAATTTAGTGCTACTTTGCAAACCACGCA
CACCACCTGTGCTCAAGATGTTTTTCGTGACGAGTTCTTAAGGTCCAACG
ATAGGTCTATGCTGCCACCGGCAAGCTATACCGCACCGTATGCACCTATC
CAAATTACGTGTACTCAAATACTAAATTTCCCCCCAAAACTGCTCTTCTT
CAGACTACCTTTTTCCAACGCTGGTGATGGTGCTGCTGCCCTCTTGCGCT
TCTCTTGCCCTCCCTTTTGTCTTCGGCCAGGGCGTCTTCATGTACTGGAT
ACCTTCGTCCGCGTTCCAGATGGGCCAGACCTACGCCATGAAGAACAACA
CTGTTCGCGAGTTCATCGGCTTGCAACCCACGGGGGTGTCGAGGGGAGCT
GCAGGCGCAGCGCCAGCCGGCCAGGGAGCGAAAGCGGTCGACGACTCCTC
ATCCCCAGCGGGGCAAAAGTCGCTGACCGCTGGCGTGTTGCCAGGAAAGA
AGATGTCCAAAGCATGACAGCGCCAGAGTAGTGTGATCGGTGGAACATTA
TTCAATAAGTCGGTTTCTTGATTCCTGTGCTCCGGAGGCGTTGCGTTGTT
TTCTGCGTGGACAGGACAAGTCTTTTTGTTGTGTTCAAGTTCTTATCTTC
CGCAGGTGTTTGTTTCATGTTTTCCCACGAGGCACCGGAGGTGGTTCGGG
CTTAAGTTCTAGCAACAATCCAGCGCCTCCATTTTGTCCACTTCTGATGC
CAGATAGACTTTTGTGTCGCCTTGTGTGCAGCACAAGTAGCCTAGGAGAG
AAAGTAGGACAGAACTTTAGTTTTTTGTTTGCACTAATGTGTCAGCACTC
ATGTGTATCAATAGTCTAGTGATCCTTGTATGTCGAGCAGCAAGGAGATG
GCTCTTGTTTTTGTTGTCCAGGATGGGCGAACCACCAGCTAGCTGTGGCA
CGTCGATAGTCTGCTACTTGGGACGCTTTTGTTCGCACCGTCTCGGGTTG
GCGTCTCGTTAATTAATACGGAGTATGTCTTCGACCAGAGAGTCAGCTGC
CGTTCTCGTTTCGCATTGACTTATTTTGGCAAACTACGGATTTTCCCAGC
CTTAACTTAATTTTTCGTGACGGTACTCGATGCTTGCACCACGATAGTCA
GTAGTAGCACGTTTGACAGAAGTCACACTGTTGCCGATCTCGCAACTCTT
GGTCCGGGGGTAAAATAAATCTAGACTACTCTTATTTTGTTTGCAATATG
TCTTGGGGCGGAAAAAAATGATGAAACACGATAAAACGCCCAGGTGGCGA
AGACGGGATATTTCCTTTTCCCCTACAACAACAGCAGTACTCTCTTGCAC
CATTCTGGCGGGTTAAGGCGTTCAGCGGGGAAAGCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig90:635254..640091+

>mRNA_C-linearis_contig90.16792.1 ID=mRNA_C-linearis_contig90.16792.1|Name=mRNA_C-linearis_contig90.16792.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at C-linearis_contig90:635254..640091+ (Chordaria linearis ClinC8C monoicous)
ATGATTGCATGCCTGCGCGCAAGAGGTCTATCAAGAGGCCTGTCTCATGC
TGCTCGACGGCGCCCTCCGTTTGTGCACCCCAGCCCCCTCCCGAGCTCCT
GGGTCGTCAGGTTCTCTTCCACAGCAGAGGATAACAGCAGCAGCACCAAC
AGCGGCAGCCCTAGTAGCAGTAGCGGCGACAGTAGCAGTAGTAGCGTTGG
TGGTGCAGCAGCTGATGGCTCAGCCACACCTCCTCCAGAGTCAGGAACCT
CCGGCTTCGACCCGTCTTCTTTGATACCACCGCCACAAAGCACCGAGCCT
TGGAGCTCAGCAGCTCCAGAGTTTGTAGCGGACTTGCCCGGGACAGTCAG
CTCGTTGGTGGGGGATGCGGGGATGTACCTGCTGCACGGGGTGCTCACCA
CCGGGATGCACATCACAGGGGGCGTGCAGGCCGGGGTGCAGGGGGTCCAC
CACTTGACGGGGCTGCCTTGGTGGGCTACGATAGGCGTGGCGACGATCTG
CGTCAAGGTTTCCCTGTTGCCCGTGGTGGTGTATCAGGCCAGACACATGG
ACCGCATGAGGATGGCGTGGCCGGAGATTCAGATCCTGAGGGACCACCTC
GCTACGACGCTAGAGGAGATGATTGCATGCCTGCGCGCAAGAGGTCTATC
AAGAGGCCTGTCTCATGCTGCTCGACGGCGCCCTCCGTTTGTGCACCCCA
GCCCCCTCCCGAGCTCCTGGGTCGTCAGGTTCTCTTCCACAGCAGAGGAT
AACAGCAGCAGCACCAACAGCGGCAGCCCTAGTAGCAGTAGCGGCGACAG
TAGCAGTAGTAGCGTTGGTGGTGCAGCAGCTGATGGCTCAGCCACACCTC
CTCCAGAGTCAGGAACCTCCGGCTTCGACCCGTCTTCTTTGATACCACCG
CCACAAAGCACCGAGCCTTGGAGCTCAGCAGCTCCAGAGTTTGTAGCGGA
CTTGCCCGGGACAGTCAGCTCGTTGGTGGGGGATGCGGGGATGTACCTGC
TGCACGGGGTGCTCACCACCGGGATGCACATCACAGGGGGCGTGCAGGCC
GGGGTGCAGGGGGTCCACCACTTGACGGGGCTGCCTTGGTGGGCTACGAT
AGGCGTGGCGACGATCTGCGTCAAGGTTTCCCTGTTGCCCGTGGTGGTGT
ATCAGGCCAGACACATGGACCGCATGAGGATGGCGTGGCCGGAGATTCAG
ATCCTGAGGGACCACCTCGCTACGACGCTAGAGGAGATTCCGCAACGTCG
TGTTCTGGCGCGATGGCAGAAGTACAAGATATTCTTTTCGGGGACTCGAG
GGATACTGGGACTGCATGGATTCCGCAACGTCGTGTTCTGGCGCGATGGC
AGAAGTACAAGATATTCTTTTCGGGGACTCGAGGGATACTGGGACTGCAT
GGGGCTCACTTGCCGGGGCTATTCGCGACACCGCTGGTTAACCTACCGGT
ATTTGTGCTGTTCGTCTGGTCCATTCGCGGGATGCTAAGAGACGCGACAG
TGCCTGGGCTCGATACAGGGCTCACTTGCCGGGGCTATTCGCGACACCGC
TGGTTAACCTACCGGTATTTGTGCTGTTCGTCTGGTCCATTCGCGGGATG
CTAAGAGACGCGACAGTGCCTGGGCTCGATACAGGTGGAATCCTGTGGTT
CGTGGACCTGACAGTGACGGATTCGAGCCTAATGCTGCCCATCATTGGGA
CGTTGTTCACCTACACCACCTTGGAGTTGGCTAAAATGAAGGGCGCCACG
GGATGGATAAAGGTGGAATCCTGTGGTTCGTGGACCTGACAGTGACGGAT
TCGAGCCTAATGCTGCCCATCATTGGGACGTTGTTCACCTACACCACCTT
GGAGTTGGCTAAAATGAAGGGCGCCACGGGATGGATAAAGTTCTTCCAAG
ATGGGATGCAGACGTTTGTCATCCTGATGCTCCCCTGGGCCAGCACCTTC
CCGCAGGCAAGTGCTGCCTTCTTCCAAGATGGGATGCAGACGTTTGTCAT
CCTGATGCTCCCCTGGGCCAGCACCTTCCCGCAGGCAAGTGCTGCCGGCG
TCTTCATGTACTGGATACCTTCGTCCGCGTTCCAGATGGGCCAGACCTAC
GCCATGAAGAACAACACTGTTCGCGAGTTCATCGGCTTGCAACCCACGGG
GGTGTCGAGGGGAGCTGCAGGCGCAGCGCCAGCCGGCCAGGGAGCGAAAG
CGGTCGACGACTCCTCATCCCCAGCGGGGCAAAAGTCGCTGACCGCTGGC
GTGTTGCCAGGAAAGAAGATGTCCAAAGCATGAGGCGTCTTCATGTACTG
GATACCTTCGTCCGCGTTCCAGATGGGCCAGACCTACGCCATGAAGAACA
ACACTGTTCGCGAGTTCATCGGCTTGCAACCCACGGGGGTGTCGAGGGGA
GCTGCAGGCGCAGCGCCAGCCGGCCAGGGAGCGAAAGCGGTCGACGACTC
CTCATCCCCAGCGGGGCAAAAGTCGCTGACCGCTGGCGTGTTGCCAGGAA
AGAAGATGTCCAAAGCATGA
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