mRNA_C-linearis_contig90.16789.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI) HSP 1 Score: 478 bits (1229), Expect = 3.670e-163 Identity = 272/327 (83.18%), Postives = 285/327 (87.16%), Query Frame = 1
Query: 1 MEGVFGEEGEEEGXXXYAGLDRXXXXXXXXXXGATVLDGVVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNPRYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAERERLXXXXXXXXXXXXXXXXXXENLMFFNTL 981
M+GVF EEGE G G+ XXXX GATVLD V+W+LG DKFHRDFRN +LLGLVQDRFPKSKLAYL VKVMLDNSSPTERKVDEQVSASISAR LFDKLC+ W+T+N TKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSD QNPRYVVN+A MVQYIR NLVKCT RDRYGKETARI+EILLQNK+LDQQQVGEMAMIPPSDARERLYRL+RDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVL+SLYKAMLNMRLRRKFVYSNDK LFIHDA XXXXXXXXXXXXXXXXXXENLMFFNT
Sbjct: 1 MDGVFEEEGEG-GHAEEEGV--LGGXXXXIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM) HSP 1 Score: 154 bits (389), Expect = 2.260e-36 Identity = 83/267 (31.09%), Postives = 152/267 (56.93%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR GV + RD R+ + + + + +A + V+ ML +SSP ER+ DE S +SAR LF+ ++A WR ++++ +C D + MV K+ +A +P +YVV++ +V++++ + ++D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + + + ++ +R RRKF +KEL +ND ++
Sbjct: 320 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLFEME----SVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 579
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI) HSP 1 Score: 154 bits (390), Expect = 2.910e-36 Identity = 85/267 (31.84%), Postives = 151/267 (56.55%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR GV + RD R+ + + + + +A + V ML +S+P ER+ DE SA +SAR LF+ N +A WR ++++ +C D + MV K+ +A +P +YVV++ +V++++ ++D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ V + + ++ +R RRKF +KEL +ND ++
Sbjct: 382 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNME----SVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 641
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL) HSP 1 Score: 154 bits (389), Expect = 3.120e-36 Identity = 84/257 (32.68%), Postives = 151/257 (58.75%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKEL 846
+VWR G+ + RD R+ + + + + +A + V+ ML +SSP ER+ DE SA +SAR LF+ + KA+P WR +++++ +C D + M+ K+ +A +P +YVV++ +V++++ V ++D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + + + ++ +R RRKF +KEL
Sbjct: 354 LVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME---------SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKV-AQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKEL 598
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP) HSP 1 Score: 153 bits (386), Expect = 5.270e-36 Identity = 86/272 (31.62%), Postives = 152/272 (55.88%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR GV + RD R+ + + + + +A + V ML +SSP ER+ DE S +SAR LFD + KA+P WR ++++ +C D + MV K+ +A +P +YVV++ +V++++ ++D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + + + ++ +R RRKF +KEL +ND ++
Sbjct: 313 LVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDME---------SVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK 572
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.480e-35 Identity = 81/267 (30.34%), Postives = 150/267 (56.18%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDAQNP---------RYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR GV + RD R+ + + + + +A + V ML +S+P ER+ DE +SA +SAR LF N +++ WR ++++ +C D + MV K+ +A +P +YVV++ +V++++ ++D++G +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L +++V +QE+PKRAD NP TF+ W++ + + + + ++ +R RRKF +KEL ND ++
Sbjct: 364 LVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGME----SVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEGNDLDK 623
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.420e-34 Identity = 88/273 (32.23%), Postives = 147/273 (53.85%), Query Frame = 1
Query: 97 GATVLDGVVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
GA +VWR G D+ RD R+ + + + + +A + V ML +SSP ER+ DE S ++AR LF +K+ WR +++++ +C D + MV K+ DA R YVV++ +V ++R V+D++G +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY L +R+V +QEVPKRAD NP T Y W++ ++ + V + + ++ +R RRK +KEL +ND +
Sbjct: 368 GALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELFAVPAVKSALPKDSKDT----WRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIARSDQLVEANDVAK 634
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC) HSP 1 Score: 142 bits (359), Expect = 2.720e-32 Identity = 79/256 (30.86%), Postives = 147/256 (57.42%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKEL 846
+VWR G+ + R+ R+ + + + + +A + V ML++SSP ER+ +E SA +SAR L++ T KA+P WR +++++ +C D + M+ K+ D+ R YVV++ +V++++ ++DR+G +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + + + ++ +R RR F +KEL
Sbjct: 359 LVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKEL 603
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.420e-32 Identity = 83/270 (30.74%), Postives = 143/270 (52.96%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLFDKLCQTWKTSNFTKNKAVPD----WRRFVSWMSALCTDLTSMVSKIPGS--DAQNPR------YVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR G + RD R+ + + + + +A + V ML +SSP ER+ DE S +SAR LF K+ P+ WR ++++ +C D + MV K+ D R YVV++ +V+++R V+D++G +ARI+ +L++ + L+Q+ +GE+A++P +D R RLY L +++V +QEVPKRAD NP TF+ W++ ++ V + + ++ +R RRK +KEL ND ++
Sbjct: 365 LVWRFGAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARELF--------AMESVKSALPPESNNPWRLLLNYIMVMCRDKSGMVMKVSQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVRLLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKELIARSELLVEGNDLDK 624
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.300e-30 Identity = 74/269 (27.51%), Postives = 151/269 (56.13%), Query Frame = 1
Query: 118 VVWRLGVDKFHRDFRNNSLLGLVQDRFPKSKLAYLAVKVMLDNSSPTERKVDEQVSASISARTLF--DKLCQTWKTSNFTKNKAVPD-WRRFVSWMSALCTDLTSMVSKIPGSDAQ--------NPRYVVNIANMVQYIRSNLVKCTVRDRYGKETARILEILLQNKFLDQQQVGEMAMIPPSDARERLYRLLRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDAER 891
+VWR G D+ R+ R+++ + + + +A + V ML S ER+ +E S ++AR ++ D++ Q K + D WR +++++ + D + M++++ A +YVV++ N+ Y++ + ++D++G ++ARI+ ++L+ + L+Q+ +GE+A++P ++AR RLY L RD+++ +QE+PKR+D NP T Y W++ + +V+ + + ++ +R RR F+ +KEL + ND E+
Sbjct: 360 LVWRCGTDQLLRELRHDAFVRFAMENV--NHVAGVIVSAMLSYSMSHERESNEPTSFPMTAREIYKVDEVKQALP-------KEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEK 619 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig90.16789.1 >prot_C-linearis_contig90.16789.1 ID=prot_C-linearis_contig90.16789.1|Name=mRNA_C-linearis_contig90.16789.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=328bp MEGVFGEEGEEEGEDEYAGLDRGAGKGKGEGVGATVLDGVVWRLGVDKFHback to top mRNA from alignment at C-linearis_contig90:606670..612989- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig90.16789.1 ID=mRNA_C-linearis_contig90.16789.1|Name=mRNA_C-linearis_contig90.16789.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6320bp|location=Sequence derived from alignment at C-linearis_contig90:606670..612989- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig90:606670..612989- >mRNA_C-linearis_contig90.16789.1 ID=mRNA_C-linearis_contig90.16789.1|Name=mRNA_C-linearis_contig90.16789.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at C-linearis_contig90:606670..612989- (Chordaria linearis ClinC8C monoicous)back to top |