mRNA_C-linearis_contig90.16781.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16781.1
Unique NamemRNA_C-linearis_contig90.16781.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 413 bits (1061), Expect = 1.260e-128
Identity = 208/274 (75.91%), Postives = 236/274 (86.13%), Query Frame = 1
Query:    1 MLVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVY 822
            MLV+PHTG++VEDFNE GV IAAYFDLFPHGVGGHLD R R L F +WAR LLRRRD RFR++R FVF LAAIIFRREAISNAHWKL+GRVSRGVA+ L  ITP+DLLAVARE+E G S  KALA   A RQLI +M SVN ++SWT+FNK+ LRM AISMI+QLGQPLFWMTINPAD+NSP+VM+LAGVDLDVSSRLK D+P+Y +RL +IAADPVA A+FFH+ I  V++TLLR GA DGDGGVLGRVKAYVGMTEEQRR+ LHCHLLV VY
Sbjct: 2607 MLVLPHTGKMVEDFNEPGVMIAAYFDLFPHGVGGHLDKRQRPLNFTKWARCLLRRRDPRFRKNRTFVFCLAAIIFRREAISNAHWKLTGRVSRGVAQELDGITPDDLLAVAREIEGGTSTAKALANRPAARQLIRTMQSVNGDASWTMFNKRTLRMKAISMIIQLGQPLFWMTINPADSNSPVVMKLAGVDLDVSSRLKTDLPQYVKRLQLIAADPVASAEFFHVMIDAVMKTLLRFGAKDGDGGVLGRVKAYVGMTEEQRRLTLHCHLLVWVY 2880          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 1.950e-118
Identity = 187/283 (66.08%), Postives = 224/283 (79.15%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            LV+ H+G++V DF+  G+ + AYFDLFPHGVGGHLD R R L   RWA+ILLRRRD+RFR+SR F++ + A+IFRREAISNA WKL GRV R VA R+A +T +DL AVA EMETG+S   ALA     R LI++M  V+  +SWTI+NK++ RMIAIS IMQ+GQPLFW+TINPAD NSP+VM LAGV+LDV+SRLKAD P Y ++L  +A DPVA ADFFH TI  VL  LLR GA DGDGGVLGRVK YVGMTEEQ+R+ LHCHLLV VYG+NDFAS R+
Sbjct:  401 LVLTHSGQMVSDFHNPGLFVGAYFDLFPHGVGGHLDKRTRPLDLKRWAQILLRRRDARFRKSRTFLYCVCALIFRREAISNARWKLRGRVPRDVASRIAGVTAQDLRAVAAEMETGSSGFSALADRPGIRDLIKNMEFVHAGASWTIYNKRSTRMIAISFIMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRE 683          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 4.210e-117
Identity = 188/283 (66.43%), Postives = 225/283 (79.51%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            LV+ H+G++V DF+  G+ + AYFDLFPHGVGGHLD R R L   RWA+ILLRRRD+RFR+SR F++ + A+IFRREAISNA WKL GRV R VA R+A +T +DL AVA EMETG+S   ALA     R LI++M SV+  +SWTI+NK++ RMIAIS IMQ+GQPLFW+TINPAD NSP+VM LAGV+LDV+SRLKAD P Y ++L  +A DPVA ADFFH TI  VL  LLR GA DGDGGVLGRVK YVGMTEEQ+R+ LHCHLLV VYG+NDFAS R+
Sbjct:  481 LVLTHSGQMVSDFHNPGLFVGAYFDLFPHGVGGHLDKRTRPLDLKRWAQILLRRRDARFRKSRTFLYCVCALIFRREAISNARWKLRGRVPRDVASRIARVTAQDLRAVAAEMETGSSGFSALADRPGIRDLIKNMESVHAGASWTIYNKRSTRMIAISFIMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRE 763          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 1.390e-102
Identity = 172/282 (60.99%), Postives = 216/282 (76.60%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLR 849
            +V+ H+G++V DF+E G+ IAA++DLFPHGVGG LD R R LTF RWARILL+RRD RFR+ R F+F + A+IFRREAI NA +KL G +S  +A  LA +TP DL   A EME G+    +L  +   R LI  M SV+  +SWTI NK+  RMIAIS ++Q+GQPL W+TI+PAD NSP+VM+LAGVD+DV+S+LK+D P YTE+L ++A+DPVA A F+H TIQ VL  LLR GA DGDGGVLGRVK YVGMTEEQ+R+MLH HLLV +YG+NDF S R
Sbjct:  549 MVLTHSGKLVSDFSEPGLFIAAFYDLFPHGVGGPLDKRRRSLTFKRWARILLKRRDPRFRKHRTFLFCVCALIFRREAIENARFKLRGNISTRIASLLAKVTPADLSQAAAEME-GSFDFSSL--NEGIRSLIRMMESVSSGASWTIHNKRCTRMIAISYMIQMGQPLIWLTISPADHNSPIVMKLAGVDIDVTSKLKSDFPDYTEKLRLVASDPVASAQFYHNTIQGVLTCLLRFGASDGDGGVLGRVKGYVGMTEEQKRLMLHAHLLVWIYGYNDFVSFR 827          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 4.220e-89
Identity = 154/271 (56.83%), Postives = 194/271 (71.59%), Query Frame = 1
Query:   40 FNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            F + G+ +AA+FDLFPHG+GGHLD R R+++F  WA+ILLR+RD RFR+ ++F+F + A+IFRREAI NA WKL+GR+SR  AE LA ITPEDL A A+EME G+S   ALA  +A R L+ +M SV+  SSWTI+NK++ RMIAIS+IMQ+GQPL+WMTI PADT SP+                        RL ++A+DPVA A  +H     VL  LLR  A DGDGGVL RVK Y+GMT+EQRR+MLH H+LV VYGFNDF+S RD
Sbjct:  230 FYDEGLFVAAFFDLFPHGIGGHLDERRRYMSFQEWAKILLRQRDPRFRKHKSFLFCVWALIFRREAIKNARWKLTGRMSRRTAETLATITPEDLAAAAKEMEQGSSVWSALANRNAVRTLLTTMESVHAGSSWTIYNKRSTRMIAISLIMQIGQPLWWMTIGPADTKSPI------------------------RLRLVASDPVASALLYHSVTDAVLTCLLRFDARDGDGGVLERVKGYLGMTKEQRRLMLHFHVLVWVYGFNDFSSFRD 476          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 2.990e-81
Identity = 143/283 (50.53%), Postives = 182/283 (64.31%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            +VV HTG +V DF + G+ + AYF+LF HG+GGHLD R R ++   WA+I LRRRD RF + + F F + A+ FRREA +NA WK+ G +    AE LA+I+PED+ A A+E+E G  +                                       S IMQ+GQPL+WMT +PADTNSP+V+QLAGV +DV+SRLK+D P Y ERL ++A D V  A F+H   + VL   LR GA DGDGGVLGRVKA VGMTEEQRR+MLHCHLLV VYG+NDF+  R+
Sbjct:  527 MVVTHTGNMVSDFYDEGLFVVAYFNLFSHGIGGHLDVRRRPVSCKEWAQIFLRRRDGRFSKDKTFWFCVCALTFRREATNNARWKIKGGMPSDAAETLASISPEDIPAAAKELEQGTGS-------------------------------------CDSFIMQMGQPLWWMTFSPADTNSPIVLQLAGVTIDVTSRLKSDFPDYVERLRLVACDHVTSAFFYHSVTKAVLTCWLRFGATDGDGGVLGRVKACVGMTEEQRRLMLHCHLLVWVYGYNDFSIFRE 772          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.070e-74
Identity = 126/207 (60.87%), Postives = 156/207 (75.36%), Query Frame = 1
Query:  232 EAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            EAI NA WKL+GR+S   +  L+A+TPEDL   A  ME G   G  L+       LI++M SV+  +SWT  NK++ RMIAIS IMQ+GQPL WMTINPAD NSP+V+++ GVD+DVSS+LKA+ P Y ++L ++A DPVA ADFFH TI  VL  LLR GA DGDGG+LGRVK YVGMTEEQ+R++LHCHLLV V+G+NDFAS RD
Sbjct:  558 EAIENARWKLTGRISPADSRTLSAVTPEDLADAAAAMENGRGNGSVLSDRAGIAALIKTMESVHAGASWTPHNKRSTRMIAISYIMQMGQPLIWMTINPADVNSPIVVKMCGVDIDVSSKLKANFPDYVDKLRLVANDPVASADFFHNTIDGVLSCLLRFGASDGDGGILGRVKGYVGMTEEQKRLVLHCHLLVWVFGYNDFASFRD 764          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.080e-71
Identity = 131/284 (46.13%), Postives = 177/284 (62.32%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHL-DTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            LVVPH G I++D N     +      FP G G  L  TR R ++F RW +ILL RRDS +R  R F+F +AAI FR EA++N  +KLS + +   A+ +A+IT E L A+A E+++G      L      R L+ +M +V+ +++WT   K   R  A SM +  GQP FWMT+NP+D NSP VM   G D+++SS     MP + +RL++I  DPVA A FFH TI+ VL+ +LR  A DGDGG LG +KAY+GMTEEQ R+MLH HL+V V+GF     LR 
Sbjct:  216 LVVPH-GEILDDCNNNSAWVEGVMHAFPEGCGSPLCPTRKRLVSFNRWIQILLNRRDSSWRIDRCFLFCVAAIRFRHEALANVRFKLSVQPNSANADAIASITKEHLHAMAEELKSGKKTSAVLNNRPEIRSLLRTMQAVSGDATWTDHGKHRARTTAHSMFILFGQPFFWMTVNPSDLNSPFVMHYGGHDINLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHETIEAVLKYILRFQANDGDGGPLGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQ 498          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.560e-58
Identity = 115/239 (48.12%), Postives = 152/239 (63.60%), Query Frame = 1
Query:  136 VRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            V W +ILL RRDS +R  R F+F  AAI FR EAI+N  +KLS + +   A+ +A+IT E L A+A E+++G     A       R L+ +M +V+ +++WT   K   R  A SM M  GQP FWMT+NP+D NSP VM   G D+D+SS     MP + +RL++I  DPVA A FFH TI+ VL+ +LR  A  GDGG LG +KAY+GMTEEQ R+MLH HL+V V+GF     LR 
Sbjct:  304 VLWIQILLNRRDSSWRIDRCFLFCAAAIRFRHEAIANMRFKLSVQPNSANADAIASITKEHLHAMAEELKSGKKTSAAFNNRPEIRSLLRTMQAVSGDATWTDHGKHRARTTAHSMSMLFGQPFFWMTVNPSDLNSPFVMHYGGHDIDLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHGTIEAVLKYILRFQANYGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQ 542          
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Match: A0A6H5K355_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K355_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 6.050e-57
Identity = 123/284 (43.31%), Postives = 162/284 (57.04%), Query Frame = 1
Query:    4 LVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHL-DTRPRFLTFVRWARILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLAAITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFNKKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKADMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRVKAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD 852
            LVVPH G I++D N     +  +   FP G GG L  TR   ++F RW +ILL R D  +R  R F+   AAI FR EAISN  +KLS R +   A  +A+IT EDL  +A E+++G             R L     +V+ +++WT   K  +   A SM +Q G P FWMT NP+D NSP VMQ                 +Y +RL++   DPVA A FFH T++ V++ +LR GA DGDGG LG +KAY+GMTEEQ R+MLH HL+V V+GF     LRD
Sbjct:  169 LVVPH-GEILDDSNNNSAWVEGFMHAFPGGCGGPLCPTRRNPVSFNRWIQILLNRGDIAWRVDRCFLCCAAAIRFRHEAISNVRFKLSVRPNSTDANAIASITKEDLHGMADELKSGKRTSALKNNRPEIRALFRKTQAVSGDATWTDHGKHRVLATAHSMFIQFGLPFFWMTANPSDVNSPCVMQCG---------------EYRKRLDITVNDPVASATFFHETMEAVVKYILRFGAKDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTS-RELRD 435          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE1.260e-12875.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8N9_9PHAE1.950e-11866.08Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE4.210e-11766.43Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE1.390e-10260.99ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K882_9PHAE4.220e-8956.83ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE2.990e-8150.53ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI2.070e-7460.87ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K657_9PHAE1.080e-7146.13Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K1H7_9PHAE1.560e-5848.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K355_9PHAE6.050e-5743.31Helitron_like_N domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:540525..541376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue1.1e-94
Seed eggNOG ortholog2880.D7FSK0
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size852
Cds size852
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.6629357-CDS-C-linearis_contig90:540524..5413761622930776.6629357-CDS-C-linearis_contig90:540524..541376Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 540525..541376 -
1690881244.5292947-CDS-C-linearis_contig90:540524..5413761690881244.5292947-CDS-C-linearis_contig90:540524..541376Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 540525..541376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16781.1prot_C-linearis_contig90.16781.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 540525..541376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16781.1

>prot_C-linearis_contig90.16781.1 ID=prot_C-linearis_contig90.16781.1|Name=mRNA_C-linearis_contig90.16781.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=284bp
MLVVPHTGRIVEDFNEVGVTIAAYFDLFPHGVGGHLDTRPRFLTFVRWAR
ILLRRRDSRFRRSRNFVFYLAAIIFRREAISNAHWKLSGRVSRGVAERLA
AITPEDLLAVAREMETGASAGKALATSHATRQLIESMHSVNRNSSWTIFN
KKALRMIAISMIMQLGQPLFWMTINPADTNSPLVMQLAGVDLDVSSRLKA
DMPKYTERLNVIAADPVAWADFFHITIQTVLETLLRLGAPDGDGGVLGRV
KAYVGMTEEQRRIMLHCHLLVRVYGFNDFASLRD
back to top

mRNA from alignment at C-linearis_contig90:540525..541376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16781.1 ID=mRNA_C-linearis_contig90.16781.1|Name=mRNA_C-linearis_contig90.16781.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=852bp|location=Sequence derived from alignment at C-linearis_contig90:540525..541376- (Chordaria linearis ClinC8C monoicous)
ATGCTCGTGGTGCCGCATACTGGTCGGATCGTGGAGGACTTCAACGAAGT CGGCGTCACCATAGCGGCATACTTTGACCTGTTTCCGCACGGCGTCGGCG GCCATCTCGACACCAGACCCAGATTCTTAACATTCGTGAGGTGGGCTCGG ATCCTTTTGCGTCGGCGAGATTCGCGGTTCAGGAGGAGCAGAAATTTTGT CTTCTACTTGGCCGCGATAATATTCCGGCGCGAAGCGATTTCCAACGCCC ATTGGAAGCTTTCAGGCCGGGTTTCACGCGGGGTTGCTGAGCGTCTCGCC GCAATCACCCCCGAAGATCTACTGGCAGTAGCACGGGAAATGGAGACGGG CGCTTCTGCTGGCAAGGCTCTTGCTACCAGCCATGCGACCCGTCAGCTGA TCGAGTCCATGCATTCCGTTAACCGCAACTCGTCTTGGACCATCTTCAAC AAGAAGGCACTCCGGATGATCGCGATTTCTATGATAATGCAACTTGGACA GCCCCTCTTCTGGATGACGATCAACCCTGCGGACACCAACAGTCCTCTCG TGATGCAGCTGGCCGGAGTTGATCTAGATGTGTCCAGCAGGCTCAAGGCG GATATGCCGAAATACACCGAGAGGCTCAATGTGATCGCCGCGGACCCTGT TGCTTGGGCTGACTTCTTCCACATCACCATCCAGACCGTCCTGGAGACGC TCTTGCGACTCGGAGCGCCGGACGGCGACGGCGGGGTCCTCGGAAGGGTT AAGGCGTACGTTGGGATGACAGAGGAGCAGCGCCGAATAATGCTCCACTG CCACTTACTTGTTCGGGTGTATGGGTTCAACGATTTTGCGAGCTTGCGCG AC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig90:540525..541376-

>mRNA_C-linearis_contig90.16781.1 ID=mRNA_C-linearis_contig90.16781.1|Name=mRNA_C-linearis_contig90.16781.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at C-linearis_contig90:540525..541376- (Chordaria linearis ClinC8C monoicous)
ATGCTCGTGGTGCCGCATACTGGTCGGATCGTGGAGGACTTCAACGAAGT
CGGCGTCACCATAGCGGCATACTTTGACCTGTTTCCGCACGGCGTCGGCG
GCCATCTCGACACCAGACCCAGATTCTTAACATTCGTGAGGTGGGCTCGG
ATCCTTTTGCGTCGGCGAGATTCGCGGTTCAGGAGGAGCAGAAATTTTGT
CTTCTACTTGGCCGCGATAATATTCCGGCGCGAAGCGATTTCCAACGCCC
ATTGGAAGCTTTCAGGCCGGGTTTCACGCGGGGTTGCTGAGCGTCTCGCC
GCAATCACCCCCGAAGATCTACTGGCAGTAGCACGGGAAATGGAGACGGG
CGCTTCTGCTGGCAAGGCTCTTGCTACCAGCCATGCGACCCGTCAGCTGA
TCGAGTCCATGCATTCCGTTAACCGCAACTCGTCTTGGACCATCTTCAAC
AAGAAGGCACTCCGGATGATCGCGATTTCTATGATAATGCAACTTGGACA
GCCCCTCTTCTGGATGACGATCAACCCTGCGGACACCAACAGTCCTCTCG
TGATGCAGCTGGCCGGAGTTGATCTAGATGTGTCCAGCAGGCTCAAGGCG
GATATGCCGAAATACACCGAGAGGCTCAATGTGATCGCCGCGGACCCTGT
TGCTTGGGCTGACTTCTTCCACATCACCATCCAGACCGTCCTGGAGACGC
TCTTGCGACTCGGAGCGCCGGACGGCGACGGCGGGGTCCTCGGAAGGGTT
AAGGCGTACGTTGGGATGACAGAGGAGCAGCGCCGAATAATGCTCCACTG
CCACTTACTTGTTCGGGTGTATGGGTTCAACGATTTTGCGAGCTTGCGCG
ACATGCTCGTGGTGCCGCATACTGGTCGGATCGTGGAGGACTTCAACGAA
GTCGGCGTCACCATAGCGGCATACTTTGACCTGTTTCCGCACGGCGTCGG
CGGCCATCTCGACACCAGACCCAGATTCTTAACATTCGTGAGGTGGGCTC
GGATCCTTTTGCGTCGGCGAGATTCGCGGTTCAGGAGGAGCAGAAATTTT
GTCTTCTACTTGGCCGCGATAATATTCCGGCGCGAAGCGATTTCCAACGC
CCATTGGAAGCTTTCAGGCCGGGTTTCACGCGGGGTTGCTGAGCGTCTCG
CCGCAATCACCCCCGAAGATCTACTGGCAGTAGCACGGGAAATGGAGACG
GGCGCTTCTGCTGGCAAGGCTCTTGCTACCAGCCATGCGACCCGTCAGCT
GATCGAGTCCATGCATTCCGTTAACCGCAACTCGTCTTGGACCATCTTCA
ACAAGAAGGCACTCCGGATGATCGCGATTTCTATGATAATGCAACTTGGA
CAGCCCCTCTTCTGGATGACGATCAACCCTGCGGACACCAACAGTCCTCT
CGTGATGCAGCTGGCCGGAGTTGATCTAGATGTGTCCAGCAGGCTCAAGG
CGGATATGCCGAAATACACCGAGAGGCTCAATGTGATCGCCGCGGACCCT
GTTGCTTGGGCTGACTTCTTCCACATCACCATCCAGACCGTCCTGGAGAC
GCTCTTGCGACTCGGAGCGCCGGACGGCGACGGCGGGGTCCTCGGAAGGG
TTAAGGCGTACGTTGGGATGACAGAGGAGCAGCGCCGAATAATGCTCCAC
TGCCACTTACTTGTTCGGGTGTATGGGTTCAACGATTTTGCGAGCTTGCG
CGAC
back to top