mRNA_C-linearis_contig90.16779.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16779.1
Unique NamemRNA_C-linearis_contig90.16779.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: D7FMT1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMT1_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 5.470e-135
Identity = 186/230 (80.87%), Postives = 207/230 (90.00%), Query Frame = 2 
Query:   53 MESLKEQMVAWPQPPYVQALAGWFVVWAALVSIPPGHSEQRNVIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTVSGGKKPK 742
            MESLKEQ+  WPQ  YVQALAGWFV+W ALVSIPPGH+EQ+NVI MNMAHG VATSLAVVTILTGCDS+FSTA+SVAFFAVDALVMISNGRRQKRLGEK+DSP RAMDYAHH+IGA YGTFLLF Q  VCQP+CPAPNLY YAQTNEFSTPFYG+YRLTRHP+AG +FAL+FF SRIVFN  YLVPYSWSHCTF+GFM IAAPY+LLQ+ WMFLI+KK   +++ G+KPK
Sbjct:    1 MESLKEQIAGWPQFSYVQALAGWFVLWTALVSIPPGHTEQKNVIMMNMAHGAVATSLAVVTILTGCDSTFSTASSVAFFAVDALVMISNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQQVVCQPSCPAPNLYTYAQTNEFSTPFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLIMKKVAASLTCGRKPK 230
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: K3WYK4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYK4_GLOUD)

HSP 1 Score: 153 bits (387), Expect = 8.570e-42
Identity = 88/215 (40.93%), Postives = 128/215 (59.53%), Query Frame = 2 
Query:  110 LAGWFVVWAALVSI-PPGHSEQRNVIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMI-SNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTVSGGKKPKLK 748
            +A W V+W  ++ + P G S++ ++I +N AHG+V T  AV+TI  G DS+ + A S+++F VD   M+ S+G R      +     R MDY HHV+G  +G     ++ TVC      P  Y++ QTNE STPFY  +RLT + LAGA+F L+FF SRIVFN  +L+P +  HC  A ++V   P+  LQ  W  +I+KK   T+   KKP L+
Sbjct:   15 VAAWSVLWIVILQVVPAGASKRNHIISLNAAHGVVCTLTAVLTIQGGYDSTNAVAVSLSYFLVDLAAMVQSDGLRNLPTLNR----SRKMDYVHHVLGLLWGFVFFVQEATVCDAHMGNP--YVWIQTNEVSTPFYNWFRLTDNKLAGALFVLTFFGSRIVFNTAFLIPQTLRHCD-ARYLVACIPFFALQYMWFVMIVKKMARTL---KKPALQ 219
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: D0NJB7_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NJB7_PHYIT)

HSP 1 Score: 143 bits (360), Expect = 6.760e-38
Identity = 80/213 (37.56%), Postives = 124/213 (58.22%), Query Frame = 2 
Query:  107 ALAGWFVVWAALVSIPPGHSEQRN-VIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTVSGGKKPK 742
            A+A W V+W  ++++ P  + +RN +I +N AHGIV++  + +T+  G D++ S A S++FF VD   M+ +   +  L  +     R MDY HHV G  +G  L   + TVC  +   P  Y++ QTNE ST FY  YRLT   +AGA+FA SFF SR+VFN  Y++P     C    +++  +P+ LLQ AW ++I +K V +    ++ K
Sbjct:   13 AVACWAVLWTLILNVVPAGTRRRNNIITLNAAHGIVSSISSTITLYYGLDTTVSVAVSLSFFLVDLAAMVHSDGLRNLLSLR---QSRLMDYGHHVFGLYWGLVLFMNEATVCDASFGNP--YVWIQTNEVSTGFYNWYRLTDSTVAGALFASSFFLSRVVFNTVYIIPRVTQQCQ-PLYVLGCSPFFLLQYAWFYMIARKLVPSAQRDQQAK 219
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: W2QZ24_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZ24_PHYPN)

HSP 1 Score: 142 bits (358), Expect = 1.490e-37
Identity = 80/218 (36.70%), Postives = 125/218 (57.34%), Query Frame = 2 
Query:   92 PPYVQALAGWFVVWAALVSIPPGHSEQRN-VIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTVSGGKKPK 742
            P    A+A W ++W  ++++ P   + RN +I +N AHG+V+T  + +T+  G D++ S A S++FF VD   M+ +   +  L  +     R MDY HHV G  +G  L   + TVC  +   P  Y++ QTNE ST FY  YRLT   +AGA+FA SFF SR+VFN  Y++P     C    +++  +P+ +LQ AW ++I +K V +   G++ K
Sbjct:   10 PSLAAAVACWAILWTFILNVVPAGVKGRNHIITLNAAHGVVSTISSTITLYYGLDTTISVAVSLSFFLVDLAAMVYSDGVKNLLSLR---QSRLMDYGHHVFGLYWGVLLFVNEPTVCDVSFGNP--YVWIQTNEVSTGFYNWYRLTDSTVAGALFASSFFLSRVVFNTVYIIPRVAKQCQ-PLYVLGCSPFFMLQYAWFYMIARKLVPSAPQGEQTK 221
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: G4Z0P2_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z0P2_PHYSP)

HSP 1 Score: 137 bits (345), Expect = 1.440e-35
Identity = 77/210 (36.67%), Postives = 120/210 (57.14%), Query Frame = 2 
Query:   92 PPYVQALAGWFVVWAALVSIPPGHSEQRN-VIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTT 718
            P    A+A W  +W  +++  P  +  RN +I +N AHG+V+T  + VT+  G D++ S A S+++F VD   M+     +  L  +     R MDYAHH+ G  +G  L   + TVC  +    N Y++ QTNE ST FY  +RLT   +AGA+FA SFF SR+VFN  Y++P   S C    +++  +P+ +LQ  W ++I +K V++
Sbjct:   10 PDLALAVACWAALWTLILNTVPAGARGRNHIITLNAAHGVVSTLTSTVTLYYGLDTTISVAVSLSYFLVDLAAMVHADGLRNLLALR---QSRLMDYAHHIFGLYWGVVLFVNEATVCDASFG--NAYVWMQTNEVSTGFYNWFRLTDSKVAGALFASSFFLSRVVFNTVYIIPRVTSQCQ-PLYVLGCSPFFVLQYVWFYMIARKLVSS 213
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: A0A8K1CPR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPR7_PYTOL)

HSP 1 Score: 136 bits (342), Expect = 2.990e-35
Identity = 80/203 (39.41%), Postives = 116/203 (57.14%), Query Frame = 2 
Query:  119 WFVVWAALVS-IPPGHSEQRNVIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMI-SNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTV 721
            W V+W AL+  IP G S + +++ +N AHG+V T +A +TI    D++ S A S+A+F VD + M+ ++G  +     +     R MDY HH IG  +GT     + TVC      P  Y++ QTNE STPFY  +RLT H +AGA+FAL FF SRIVFN  Y +P   + C    ++    P+  LQ  W  +I++K   T+
Sbjct:   21 WMVLWTALLLVIPAGASGRNHIVSLNAAHGVVCTVVAALTIQYHLDTANSVAISLAYFLVDLVAMVKADGVTKLHTLHR----SRLMDYVHHFIGLFWGTIFYAHEATVCDAALGNP--YVWIQTNEVSTPFYNWFRLTNHVVAGALFALFFFLSRIVFNTFYFIPRLLAECD-TRYLWGCLPFFALQYVWFVMILQKMRRTL 216
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: A0A0P1A9Y0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9Y0_PLAHL)

HSP 1 Score: 134 bits (338), Expect = 1.870e-34
Identity = 80/202 (39.60%), Postives = 118/202 (58.42%), Query Frame = 2 
Query:  107 ALAGWFVVWAALVSIPPGHSEQRN-VIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMIS-NGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKK 706
            A+A W VVW  L++I P  S  RN +I +N  HG+V+T  +  T+  G D++ S A S+++F VD  VMI  +G R      +     R MDY HHV G  +G  L  ++ TVC+ +    N Y++ QTNE ST FY  +RLT   +AGA+FA SFF SR++FN  Y++P   + C    +++   PY +LQ  W ++I +K
Sbjct:   25 AVACWSVVWVLLLNIVPAGSRGRNHIITLNATHGVVSTISSAFTLYYGLDTTISVAVSLSYFLVDLAVMIHLDGIRNLYSLRR----SRLMDYGHHVFGLYWGVVLFMKEATVCEHSFG--NAYVWMQTNEVSTFFYNWFRLTDSTVAGALFASSFFLSRVLFNTIYIIPKVATKCK-PLYVLGCMPYFVLQYVWFYMIARK 219
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BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: A0A484EDY1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY1_BRELC)

HSP 1 Score: 127 bits (319), Expect = 9.420e-32
Identity = 74/214 (34.58%), Postives = 122/214 (57.01%), Query Frame = 2 
Query:  107 ALAGWFVVWAALVSIPP----GHSEQRNVIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAVTTVSGGKK 736
            A A   V+W  ++ +      G ++  ++I +N  HG+++T  + +T+  G D++ S A S+++F VD  VM+ +   +  L  +     R MDY HH++G  +G  L   + TVC  +    N Y++ QTNE ST FY  +RLT   +AGA+FA+SFF SRIVFN  Y++P   + C    +++  +PY +LQ  W ++I +K +   SGG +
Sbjct:   20 AAASGVVLWTFILYVVSTGFLGRNKTSHIITLNATHGVLSTLASTITLYFGLDTTLSVAISLSYFLVDLFVMVHSDGPRNILSLR---QSRLMDYGHHILGLYWGIVLFKNEATVCDASFG--NAYVWMQTNEVSTGFYNWFRLTDSRVAGAMFAISFFFSRIVFNTVYIIPRVATQCQ-PLYILGCSPYFVLQYVWFYMIARKLL---SGGSQ 224
[Close]
BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: H3GG31_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG31_PHYRM)

HSP 1 Score: 125 bits (314), Expect = 2.780e-31
Identity = 76/208 (36.54%), Postives = 111/208 (53.37%), Query Frame = 2 
Query:   92 PPYVQALAGWFVVWAALVSIPPGHSEQRN-VIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVIAAPYELLQIAWMFLIIKKAV 712
            P    A+A W  +W  +++  P  +  RN +I +N  HGIV+T  + VT+  G D++ S          D    + + RR            R M+YAHH+    +G  L   + TVC P+    N Y++ QTNE ST FY  YRLT   +AGA+FA SFF SR+VFN  Y++P   SHC    +++  +P+ LLQ AW ++I +K V
Sbjct:   10 PDLAVAVASWGALWTLILNAVPAGARGRNHIITLNAVHGIVSTIASTVTLFFGLDTTIS----------DKGASLLSLRRS-----------RQMEYAHHIFSLYWGVVLFVNEATVCDPSFG--NSYVWIQTNEVSTGFYNWYRLTDSTVAGALFASSFFLSRVVFNTLYIIPRVVSHCE-PMYVLGCSPFFLLQYAWFYMIARKLV 193
[Close]
BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Match: A0A5D6YCA0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCA0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.190e-31
Identity = 72/168 (42.86%), Postives = 101/168 (60.12%), Query Frame = 2 
Query:  110 LAGWFVVWAALVS-IPPGHSEQRNVIRMNMAHGIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKVDSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFSTPFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVP 610
            +  W VVW A++S +P G S + +V+ +N  HG+V T  AV+T+    +S+ S A S+++FAVD + M+       R+     S  R MDY HHV+G  +G     ++ +VC      P  Y++ QTNE STPFY  +RLT    AGA+FALSFFASR+VFN   LVP
Sbjct:   14 VGAWSVVWGAVLSLVPAGTSGRDHVMTLNAVHGVVCTVAAVLTLALHLESTTSVAVSLSYFAVDFVTMVRADGGLARIPALARS--RQMDYVHHVLGLGWGLTYYAQEASVCAAATGNP--YVWIQTNEVSTPFYNWFRLTGSAAAGALFALSFFASRVVFNTLVLVP 177
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FMT1_ECTSI5.470e-13580.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K3WYK4_GLOUD8.570e-4240.93Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NJB7_PHYIT6.760e-3837.56Uncharacterized protein n=3 Tax=Phytophthora infes... [more]
W2QZ24_PHYPN1.490e-3736.70Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
G4Z0P2_PHYSP1.440e-3536.67Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A8K1CPR7_PYTOL2.990e-3539.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1A9Y0_PLAHL1.870e-3439.60Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A484EDY1_BRELC9.420e-3234.58Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3GG31_PHYRM2.780e-3136.54Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6YCA0_9STRA6.190e-3142.86Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:525627..532504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue2.1e-107
Seed eggNOG ortholog2880.D7FMT1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2C438@1,2RYKU@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_000260.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size882
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16779.1prot_C-linearis_contig90.16779.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 525758..532452 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.1408267-UTR-C-linearis_contig90:525626..5257571622930776.1408267-UTR-C-linearis_contig90:525626..525757Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 525627..525757 -
1690881244.3166864-UTR-C-linearis_contig90:525626..5257571690881244.3166864-UTR-C-linearis_contig90:525626..525757Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 525627..525757 -
1622930776.2773082-UTR-C-linearis_contig90:532452..5325041622930776.2773082-UTR-C-linearis_contig90:532452..532504Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 532453..532504 -
1690881244.4083369-UTR-C-linearis_contig90:532452..5325041690881244.4083369-UTR-C-linearis_contig90:532452..532504Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 532453..532504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.1595473-CDS-C-linearis_contig90:525757..5259321622930776.1595473-CDS-C-linearis_contig90:525757..525932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 525758..525932 -
1690881244.3297818-CDS-C-linearis_contig90:525757..5259321690881244.3297818-CDS-C-linearis_contig90:525757..525932Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 525758..525932 -
1622930776.1818497-CDS-C-linearis_contig90:526454..5265321622930776.1818497-CDS-C-linearis_contig90:526454..526532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 526455..526532 -
1690881244.3443644-CDS-C-linearis_contig90:526454..5265321690881244.3443644-CDS-C-linearis_contig90:526454..526532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 526455..526532 -
1622930776.2041874-CDS-C-linearis_contig90:526978..5271131622930776.2041874-CDS-C-linearis_contig90:526978..527113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 526979..527113 -
1690881244.3578446-CDS-C-linearis_contig90:526978..5271131690881244.3578446-CDS-C-linearis_contig90:526978..527113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 526979..527113 -
1622930776.2247038-CDS-C-linearis_contig90:527632..5277991622930776.2247038-CDS-C-linearis_contig90:527632..527799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 527633..527799 -
1690881244.3682675-CDS-C-linearis_contig90:527632..5277991690881244.3682675-CDS-C-linearis_contig90:527632..527799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 527633..527799 -
1622930776.2431083-CDS-C-linearis_contig90:528339..5284291622930776.2431083-CDS-C-linearis_contig90:528339..528429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 528340..528429 -
1690881244.3852448-CDS-C-linearis_contig90:528339..5284291690881244.3852448-CDS-C-linearis_contig90:528339..528429Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 528340..528429 -
1622930776.2607903-CDS-C-linearis_contig90:532398..5324521622930776.2607903-CDS-C-linearis_contig90:532398..532452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 532399..532452 -
1690881244.3978102-CDS-C-linearis_contig90:532398..5324521690881244.3978102-CDS-C-linearis_contig90:532398..532452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 532399..532452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16779.1

>prot_C-linearis_contig90.16779.1 ID=prot_C-linearis_contig90.16779.1|Name=mRNA_C-linearis_contig90.16779.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MESLKEQMVAWPQPPYVQALAGWFVVWAALVSIPPGHSEQRNVIRMNMAH
GIVATSLAVVTILTGCDSSFSTAASVAFFAVDALVMISNGRRQKRLGEKV
DSPGRAMDYAHHVIGAAYGTFLLFRQGTVCQPTCPAPNLYMYAQTNEFST
PFYGVYRLTRHPLAGAVFALSFFASRIVFNLCYLVPYSWSHCTFAGFMVI
AAPYELLQIAWMFLIIKKAVTTVSGGKKPKLK*
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mRNA from alignment at C-linearis_contig90:525627..532504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16779.1 ID=mRNA_C-linearis_contig90.16779.1|Name=mRNA_C-linearis_contig90.16779.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6878bp|location=Sequence derived from alignment at C-linearis_contig90:525627..532504- (Chordaria linearis ClinC8C monoicous)
GCACCCTGCATTTTGCCAACAGGGGGAGAAACCGAGAGCGATAGTAGAAA
GGATGGAGAGCTTGAAGGAGCAGATGGTGGCTTGGCCTCAACCACCCTAC
GTTCAGGTCTGTCAGAGCTCATTTTTTTCCCGTGTGAAGCCTTCCGACTT
TCGTCGGATACAGCGTGGTCTTGTTCACACGTACATGATACCCCGACACA
AATTGTTGACTATGTACATACATCGGTCGGCCCGGTGGACTAGTGGTTAA
CCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATTCCAAGCAAAGGCG
ATTCTTTTGAGACTTTGCCCGTGAAAGCGATAACATAGCTGAAAAAGCTC
GTGAGTTCCAAACTTCGACTTAGCACGTTGACGATGGAAAGGGATGGCTG
CACCCTTCTCGCGATAATCCAAGGCAAGCACCACAGGAGGAAGGTGGGGC
AAAAAAGAAACAGAAAAAGAAGAAAAAAGCCCCAGTGTGTACCCCCTCCT
GTGTGACCCCGGTTGGTTCTAGTTGTTGTACAGAAAAATACACTGAACAA
GTGTAGTACTCTAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGAT
CGGAAAGGGACTGTCGCCAAAATGGGACACGCACACACAGATGGGAACTA
CTGCTCTATTTCCGAGAGCTTAGTCAGGAGCTTCGGCCCCACCACTGCTG
TAGTAGACTTTGGAGTTCGGCTGGTAGTTGTGCCGGACGTCTTGTTGTTG
CAACGCTGCGTCTGTGCTTGGTGCAGTGTTTAGTGATGAGGCTGCTGTGT
GCATCCAATTGCCACGCAGAAGTTGCGTACATCTTATCTCCGTCTGCTGA
CCGCTTTGCCCGTGTGTACGTGTCATGACGTACGCGCGCGTCTAGTGTGG
GCTCTTGCGCAGTACAAACAAGGTGGGATAGCAGGTTGTAAGCACACGCT
CTATTGTCTGTAATTCGCCCTGTGAGACTCTCTTCATCGCGCAGAAGCGA
TGGATTCCACCACCGCCTAAGTTGAAATTCCGTAAAACCAACGGTCTTGT
AACTGCCAGACGCCGGAACATGCGGGATTACAACAGCAGTAAAGCGAGAC
TGACACACACAGGAGGGGGGGGAAGGATAAAGAGGGGCGTGATGTTAGTC
TATTTTGTAACAAGACACACCCTCAATACGCATCACCCCTCCTGACGCTA
ACATGCTTTTCGGGGGAACTGCTGCATTCCAAGTTCAACTCCGCATGGCC
GACTTCGCGCGCAGGAACGCAGCGGAGTCTGCTATCGAGTAGGGTAACCA
AGCAGTCAAGTCACACGACTGATTGCTATATCGATCTAATGCAGGGCTTT
GAGGTTCCATACGCACAATATGGCACCCATCATGGCCAAGAGGCAAAACG
CGTCGTAGATACAAGTCTAGTCTACATGTAGTCTCCCTGGCGGTGCACAC
ACACCGCCGCAGCACCGCTACATTCGCTGACCATGACGCGGGTGAACTTT
TTTTTTCTTCTCACATTACATACATAGCTCTCTATTCCAAAACATCCATG
GGAGCCCGCGGTCACAAAACTGGGTACACTCGACGCCGCAAAGAAACTCA
AGCAGAAAGTATGTACATACGCGCCGTGCGATAAACTGGGCCCCGAGGGA
TCTCGCGTCTCGCTGGCGCTAAATCAGAGAAATAGGGTCATACCACTCCG
AAGAAAAACAAAAGGTGTTGGAAAACTCCAGAAAAACCAGGTACCACGCT
AGTGGAGGAGAGATAACTAAGACAAGCTGAAGGCTTTCCACACCTGCCTA
CAATGCCGGAGGGTCCCGTGTCGGGTTCTCGCCGACCAGGTACCCCCCAC
TCCGCACCACATTCCTGGAAGTAATTCGTGTGAAAAGTCTACAGTATACA
CAGAGAACTTCACCTCAGGTTCTCATCCTTCGGGCTACAGCAGTAGTTGG
GTGACTTGAAAATACCTGGCATACACCGACCGTGTTACGATGGCGAACGC
GTATGCACGTATCTGCATTTAGTTGTGGAGGACAAAGGTGCCGGGATGCT
GTCACTACGAGTCTAGTCTGCTGCTGTCTGGCGGGGGACACCCTTAAGTT
TTTCAGGGTACAGTAGTCGTCAGTACCACTTTTTTGGGCGGTACGAGTTT
AGGCGGTTCCGCAATATATATGGCGGGAATATTTAGGAGGTAATGCGGGC
GGTAATTTTCAGGCGGTTTGCAATTCGGCGGTACCGGTAACAACACAATA
GGGCGGTCAAGCGTACAACGCCAACGGAAATGTTGCAGCCGTCAGCGGTT
CTCGTACTCCGGCGATTTCCTAAGCCCCTAGCTATCTATGTATCTACAAG
TAGTATGTATCTATCTATGTAAAACGTTTCACATCTCTTTGGCGGCCGAA
CGAACGGCAAGCAAGCCTATTTCCTATTTTCTTGTCCCCTGACGATGTGA
CCGCCACTGCTGTTGTACATGTGCATACATACATACCAGGTATGTATGTT
CGATGAATTCATCACCGGAAGATATTGAAGATAGACCTCATAAATCAAAA
TAGTTTTGAAAGACAATACCTCGACAAAACGGGAAAACCGAAAAACACAA
AAACAAAAACAAAAAACAAGGAATACGATAAACCGCCAACAAAACAACAA
AACCACACTATCAGCAGGGACGCCCTGCACAAGGCCATTCGCGACAGTGT
CTGTGGAACAAGCTACGGTCAATCGGCTACCCTACTAGGAGTAGCAGTGA
GACTCGCGTCTGAAGCGCTCATTGTTTTGCTGGACCACACACACGCTGCG
CTGTGGGCAGGTGTGTGCGACGCGCTACTGCTGTACACCATGACGACTGA
CGCAGACAGGTTCTACCGAAAAGGAACCAAACAAAAAACAGAAAAGAAGA
TGATGAAAAGAAAAAGAAAACACTGAAAAAAAAGAAATGGGTGGGGATTG
AACTCCAGTTCTTCCCGTGTGGAGGTTTTGTTGCAACATATTGGACTACC
GGCCCTGGCGTACTGTTTTTGCGGTTTTGCCATATGCCGGTACCTGTTCG
GCGGTACTACGATATGGCGGTAAATTTTTGGCGGAATGCAAAACGGCGGC
AATTCTTCGGCGGTCCCGGTACGGTAACACGATAATACAGCGTTTTTTTC
GGCGGTCTGCAATTAGGCGGTACTTTTTCAGCGGGAAGCGGGATGCGGTT
TTTCGGCGGGACTGCCTTCGGCGGTTCCCGGTATCACGAATTATGGCGGT
ACTTCCCGCCAGTACCTGGACCGCCCCAATTCCCGCCCAAATAACGGCGG
GGAAAGCACCGACGACTACCCTGGAATTTTTCAAACCAGGCAGCACGCAT
CATGTCGGCTTTCATCATCAGCACCTCTCTCTTGCACTCGTGGACGTCGC
CGATTGGGGCCAGCTTCTGGCATATGATACTACTATGGTGGTTTGATGGT
TTGATACAGGGTTGGGTGATGGCGAATCGCGCATATGAATACCCGACGTT
CAAACGTCTCGATCGATCGCTTCGAGCGCTAAAAGAAAGTATTGTCGCTC
TGAAAGAAATATATGATATGATATGATGTGATACGAAGTATGAATCTCCC
TGCACATCGGAGCGTTCGATACTGGTGGTTGTTTCAATTTGGCCTGAACA
CCTGACTGCTTGGAATGCTGCTTCTAGTATGCGGCTGGGCTGTATTTTGC
TTGTTGTTTTGATCTGATCGCTTATCGTTTCTGTTGCGTGTTTGCGTGTG
TGGGTGTCGCTGGGGCACAGCAGTTTTAGTTTTTTTGGGTGGTGGCTTGA
CTATTACTTTTGTATCACAGGTTCTCGCTGGTGTAGTTCGATGAATGGCC
TGTGGTTGGTTTGTTGGCCGATTACAAAGATTAGACATAATCATGTCGAG
TTCTTGATATGTACATGGTCTACACGTGGCGATTCTTTTGATTTCCCCCA
CGTCGAAATTTGCTTCATTTCGTCGGCACGCATATGTGCTTCTTCGTTGT
TGCCTGTACGAGTTTCCTGATCGATGTATATTTCTTCCGATCCACACCCG
TATGCACGCAAACACGCATGCGCAGGCGCTAGCTGGGTGGTTCGTGGTGT
GGGCTGCGTTGGTGAGCATCCCGCCAGGGCACAGCGAGCAAAGAAACGTG
ATTCGCATGAACATGGTAAGGAAGGAGAAGGAAGGAGAAGGAAAGAGAAA
ACAAACCGGCAGAGCAGAGCAGAGAGGAGAGGAGCAGAGAGGAGCAGAGA
AGAGCAGAGAGGAGCAGAGAGGAGACGAAAATTAGTGTTGAGCTACGAGT
ATGTATACCGAAGTATCATACTTCGTCGCGTCGCCCAGAAGCATAAATTA
TGTCAAATTATGTCGTATAAATACTTCCAAGTATATGTCGAGAAACTGCT
GTGGGGTTGGTCGAGGCAGCAGAAGGGGACAGAAGGACGAGATTTAGCTT
GGAGGCCAACTATTTAGTCGAGAGCGAGATTTGTTTGGTCACGACTGGTA
CAGTAACAGGCAAGCCTCCTCTGCGGGAAAACATCGCATCCAGAAAATGC
TGCCATATGAGAGGTGCTACAGCAGTACACCGCCCAGCAATTAAGCCGTC
GCAGCCAGTTTTTTGTTTTTGTGTCGTCCGTATTTATGTTTTTCTTTCCC
ATCTCCCCTCACTTCACCTCATCTCGTATTCTCGTGTAATACGTGACATC
AACAGGCGCACGGGATAGTTGCCACGAGCTTGGCGGTGGTGACCATCTTG
ACCGGCTGCGACAGCTCCTTTTCAACGGCCGCCAGCGTGGCTTTTTTCGC
GGTGGACGCTCTCGTCATGATTTCCAACGGGCGGAGGCAGAAGCGGCTGG
GGGAGAAGGTCGATTCTCCTGGGTGAGTACAAGTAGACTCGCAGCAGTCA
TCGCGACCTGCCGCTATCGCTGGTGCTGCATCTGCTGCCACGTCTGCTGC
CATGGTGGGGTTGATGACACGTGGTTCACGTTCGGGAGGACCGCAGGGAC
AGCAGGCGTGTTTCTTCTTCTTCTTCTTGTCTTTTCATATTGTTTGGTTT
TTGGCTGCTGGTACAACGATTCAAAGATACAACGCCCAGTGGCCGTAACT
ACGTCCAAGCATTGCATGCTATGGGCATGACACAAGTGACAGCGATAGCC
TCGTCTTGCAGTGTGACGGGTTCAATACCCATACCGTTTGCTGTCTCGGT
TGATGTTGTTGGTGCAGTAAATAGTTGAGAAATGAGGCAAACCATATTGT
ACGCAAGTGCCTACCGTTGCGTTTGTTATTACTGTGGTTGGGCCACCGCC
CTGCCTAACGTCTTCTACCCTTCTCTCGGTTTCTGGATCAACACCGATGC
CATACCGTGACATGCCGATGCCATACCGTGCCCACACAAAGGCGGGCCAT
GGACTACGCGCATCACGTGATCGGTGCGGCCTACGGCACGTTCCTACTCT
TCCGCCAAGGGACGGTTTGCCAGCCGACCTGCCCAGCGCCCAACCTCTAT
ATGTATGCCCAGACCAACGAGTTCAGGTAAATACTGCTGTGTGCCTACTT
CGGAATATCTAGTCAGGTTCGAGTTCAGGTAAATACTGCTGCTGTGTGCC
TACTTCGAAATATCTAGTCAGGTTCGAGTTCAGGTAAATACTTCTGTGTG
CCTACTTCGAAATATCGAGTCAGGTTTTTTGGGGGTGCGCATGTACAGTC
TGGTTAAATAGCGTTAATGCAGCATAGGCACAGAGCGCATGTTTTTACAG
CAGCGCACGAGTGCCATAGTGATGTTGGATGTACAATCCCTTTGTGTGGT
TGATGAAAATAAGGCAAGATGTGACTAGCAGCTGCGGACTCGACTATGGT
CACTCGCAGTCCGTCAGATGCCGTAAATCTGCGATTCTTTGGGTCAACGT
TCTATTTCCCATCTCTCGGTGGTTGCGCGAATTTCTCGTCTCCTGTCCTG
TCCTGTCCTTGTTTTGCTGCAGCACACCCTTTTACGGGGTATATCGGCTG
ACTAGGCACCCTCTTGCCGGGGCGGTCTTCGCGCTGTCCTTCTTTGCGAG
GTAAGAGAGAGAGAGAGGTGAACAATACGACACTACTGCACTGCCACAAA
TTGTTAGGATCTTGCCTTACAGCGTTCAGCTTTCTGATGTACGACCGAAC
TGTCGCTCGACCGTTGCGCACAGGTCGGAAACCAAATCTGCCGTGAGGCG
TGTCGTGTGTAACCGTAACCTTAATCCTACACCCTAAAACTGTCGAAAAT
GCAAGCACACCAGACCTTGGTCATCATACTACCGATTTACTTGAGACGAT
CGCTATAATAGATCGAATCGTCCTGGCAGTATGTAGCTGTCGATGGCCGT
CGTTTTGCAAGCGGAAACTCGGGGGATATTTGCCGTCTCTATTGGCTACA
ATATGGCCTGATCATTTCTTCTGGTAGTTTTTTTCGTTGTTGCTTTTCGT
GGCAACTCGTTTGGCTGACGGACAGCTGGCTGCTTTCGTTAACCTCGAGG
TTTTTTGTGCTTGATGGCGTATCCGTTTTTTTTCCATCGCGTTTCCTTTT
TCTCGACACGTCGGGTTTGCAGCCGGATCGTGTTCAACCTGTGTTACCTC
GTACCATACTCGTGGAGCCATTGCACCTTCGCAGGCTTCATGGTCATCGC
CGCGCCTTACGAGCTCCTCCAGATCGCGTGGATGTTCTTGATCATCAAAA
AGGCAGTGACCACCGTGTCCGGTGGCAAAAAACCCAAGCTAAAGTAGCGG
TGCCACGCCCGTGGCGCCTGGTGGGGTGGGAGGCCGACTACTTTAATCTA
GGCCAAGTCAGGTTACTAGAGCTGAATGAAAGTATTCGCAGGGCTTCGCA
GTGCTTCGCTGGAAGCTGCTAATGGCTC
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Coding sequence (CDS) from alignment at C-linearis_contig90:525627..532504-

>mRNA_C-linearis_contig90.16779.1 ID=mRNA_C-linearis_contig90.16779.1|Name=mRNA_C-linearis_contig90.16779.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig90:525627..532504- (Chordaria linearis ClinC8C monoicous)
ATGGAGAGCTTGAAGGAGCAGATGGTGGCTTGGCCTCAACCACCCTACGT
TCAGATGGAGAGCTTGAAGGAGCAGATGGTGGCTTGGCCTCAACCACCCT
ACGTTCAGGCGCTAGCTGGGTGGTTCGTGGTGTGGGCTGCGTTGGTGAGC
ATCCCGCCAGGGCACAGCGAGCAAAGAAACGTGATTCGCATGAACATGGC
GCTAGCTGGGTGGTTCGTGGTGTGGGCTGCGTTGGTGAGCATCCCGCCAG
GGCACAGCGAGCAAAGAAACGTGATTCGCATGAACATGGCGCACGGGATA
GTTGCCACGAGCTTGGCGGTGGTGACCATCTTGACCGGCTGCGACAGCTC
CTTTTCAACGGCCGCCAGCGTGGCTTTTTTCGCGGTGGACGCTCTCGTCA
TGATTTCCAACGGGCGGAGGCAGAAGCGGCTGGGGGAGAAGGTCGATTCT
CCTGGGCGCACGGGATAGTTGCCACGAGCTTGGCGGTGGTGACCATCTTG
ACCGGCTGCGACAGCTCCTTTTCAACGGCCGCCAGCGTGGCTTTTTTCGC
GGTGGACGCTCTCGTCATGATTTCCAACGGGCGGAGGCAGAAGCGGCTGG
GGGAGAAGGTCGATTCTCCTGGGCGGGCCATGGACTACGCGCATCACGTG
ATCGGTGCGGCCTACGGCACGTTCCTACTCTTCCGCCAAGGGACGGTTTG
CCAGCCGACCTGCCCAGCGCCCAACCTCTATATGTATGCCCAGACCAACG
AGTTCAGGCGGGCCATGGACTACGCGCATCACGTGATCGGTGCGGCCTAC
GGCACGTTCCTACTCTTCCGCCAAGGGACGGTTTGCCAGCCGACCTGCCC
AGCGCCCAACCTCTATATGTATGCCCAGACCAACGAGTTCAGCACACCCT
TTTACGGGGTATATCGGCTGACTAGGCACCCTCTTGCCGGGGCGGTCTTC
GCGCTGTCCTTCTTTGCGAGCACACCCTTTTACGGGGTATATCGGCTGAC
TAGGCACCCTCTTGCCGGGGCGGTCTTCGCGCTGTCCTTCTTTGCGAGCC
GGATCGTGTTCAACCTGTGTTACCTCGTACCATACTCGTGGAGCCATTGC
ACCTTCGCAGGCTTCATGGTCATCGCCGCGCCTTACGAGCTCCTCCAGAT
CGCGTGGATGTTCTTGATCATCAAAAAGGCAGTGACCACCGTGTCCGGTG
GCAAAAAACCCAAGCTAAAGTAGCCGGATCGTGTTCAACCTGTGTTACCT
CGTACCATACTCGTGGAGCCATTGCACCTTCGCAGGCTTCATGGTCATCG
CCGCGCCTTACGAGCTCCTCCAGATCGCGTGGATGTTCTTGATCATCAAA
AAGGCAGTGACCACCGTGTCCGGTGGCAAAAAACCCAAGCTAAAGTAG
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