mRNA_C-linearis_contig90.16778.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16778.1
Unique NamemRNA_C-linearis_contig90.16778.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.910e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 375
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263
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BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.080e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 375
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.170e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 375
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPLSRARKGKKP 263
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.190e-33
Identity = 66/122 (54.10%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 375
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 263
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JU11_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU11_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.370e-29
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRD 327
            IDF +   +LRLRLE +GE  +D+ Y D+ +  LTS PE+ F+REM+ R +F  VD+L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QR+
Sbjct:  142 IDFFSKACELRLRLETLGETVSDDVYLDITLSGLTSVPEFHFIREMHYRNEFTSVDDLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRE 247
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.390e-27
Identity = 58/107 (54.21%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:   13 DFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVA-ASTVQCFNCQEYGHYQRDC 330
            DFLA +DDLRLRLE+MGE   DE+YED+++ AL  S EY F+R+ +++ +   + E++TT  N ++D  SRKSSGP+V+GRG AM A +S VQC NCQE+GHY  +C
Sbjct:   99 DFLAKMDDLRLRLEDMGEKIPDESYEDVLLRAL--SKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAESSNVQCRNCQEFGHYANEC 203
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.330e-24
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:   10 IDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTV-QCFNCQEYGHYQRDCP 333
            IDF     DL+LRL  +GE  +   Y D+++  LT +PE++F+REM+ R     VD L+ TA   F+D QSR +SGP VSGRGAAM AAS+  QC  C+EYG +QRDCP
Sbjct:  150 IDFFTKGWDLKLRLMVLGEEVSSPVYLDIMLSGLTKAPEFTFIREMHYRDNIASVDSLQATANRIFVDQQSRNASGPMVSGRGAAMAAASSSDQCHRCKEYGPFQRDCP 258
[Close]
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.340e-17
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:  145 MNNRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNCQEYGHYQRDCPASLPAAAAAVSGKP 375
            M+ R +F  VD L+ TAT  F+D QSRK++GPAVSGRGAAM A+S+ QC  C+E+GH+QRDCP S P + A    KP
Sbjct:    1 MHYRNEFTSVDGLQDTATRFFVDQQSRKAAGPAVSGRGAAMAASSSDQCHRCKEFGHFQRDCPKSAPPSRARKGKKP 77
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE3.910e-3354.10CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE4.080e-3354.10Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.170e-3354.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE4.190e-3354.10Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JU11_9PHAE2.370e-2954.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1J1_9PHAE4.390e-2754.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE2.330e-2451.38Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.340e-1757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:448847..449629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.2220564-CDS-C-linearis_contig90:448846..4489271622930769.2220564-CDS-C-linearis_contig90:448846..448927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 448847..448927 -
1690881240.3192194-CDS-C-linearis_contig90:448846..4489271690881240.3192194-CDS-C-linearis_contig90:448846..448927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 448847..448927 -
1622930769.2467866-CDS-C-linearis_contig90:449296..4496291622930769.2467866-CDS-C-linearis_contig90:449296..449629Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 449297..449629 -
1690881240.333298-CDS-C-linearis_contig90:449296..4496291690881240.333298-CDS-C-linearis_contig90:449296..449629Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 449297..449629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16778.1prot_C-linearis_contig90.16778.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 448847..449629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16778.1

>prot_C-linearis_contig90.16778.1 ID=prot_C-linearis_contig90.16778.1|Name=mRNA_C-linearis_contig90.16778.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
QNVIDFLATLDDLRLRLEEMGEPTTDETYEDLVMVALTSSPEYSFLREMN
NRTQFLDVDELKTTATNRFLDAQSRKSSGPAVSGRGAAMVAASTVQCFNC
QEYGHYQRDCPASLPAAAAAVSGKPAAPASSEPSALVS
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mRNA from alignment at C-linearis_contig90:448847..449629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16778.1 ID=mRNA_C-linearis_contig90.16778.1|Name=mRNA_C-linearis_contig90.16778.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at C-linearis_contig90:448847..449629- (Chordaria linearis ClinC8C monoicous)
CAAAATGTCATCGACTTCCTGGCTACGCTGGACGACCTCCGGCTTCGTCT
CGAGGAGATGGGGGAGCCCACGACCGATGAAACATACGAGGACCTCGTGA
TGGTCGCCCTTACGAGTTCGCCCGAATACTCGTTCCTACGCGAAATGAAC
AATCGCACTCAGTTCCTCGACGTCGACGAGCTCAAAACCACGGCAACCAA
CCGCTTCCTCGACGCTCAATCGCGGAAGTCGTCGGGGCCTGCGGTCTCAG
GCCGCGGGGCGGCGATGGTGGCGGCCAGCACCGTTCAGTGTTTCAACTGC
CAAGAATACGGTCATTACCAGCGTGACTGCCCTGTTCCGCCCAAGCCGGG
CAATTCCAACCCCGGGAAGTCCGGGAAACAAGGGAAGAAGAAGGGCAAGA
AGGGCAAGACGGACAGCGGAAGTCCCCCTGGGCCTAAATGGTGTTCGTAC
CACCGATGCGACACGCCCACAGACAGCGAATGCAAGGCTCAGATTGCGCT
GAAAGAGAAATAGCTGGCGGCGCACCAGGCGCTCCTGATGCTTCCGGGTT
TCGGCTACCCGAACATCGGGAGTGCTCACCTCGCAGCTTCTCCCTACCAC
GCGGCAGTGCAACCTAGCTTCGCCCAAGTCGGGGGCGCTCAGTCCTCACA
GCCCCATCCGCAGGCAACGACGAACTTCGGCTACTCCTTTGCTGCGATGG
AGGCTTCGCTACCGGCGGCGGCCGCGGCGGTTTCTGGGAAGCCGGCCGCG
CCTGCGTCCAGTGAGCCGTCCGCACTGGTGTCT
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Coding sequence (CDS) from alignment at C-linearis_contig90:448847..449629-

>mRNA_C-linearis_contig90.16778.1 ID=mRNA_C-linearis_contig90.16778.1|Name=mRNA_C-linearis_contig90.16778.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig90:448847..449629- (Chordaria linearis ClinC8C monoicous)
CAAAATGTCATCGACTTCCTGGCTACGCTGGACGACCTCCGGCTTCGTCT
CGAGGAGATGGGGGAGCCCACGACCGATGAAACATACGAGGACCTCGTGA
TGGTCGCCCTTACGAGTTCGCCCGAATACTCGTTCCTACGCGAAATGAAC
AATCGCACTCAGTTCCTCGACGTCGACGAGCTCAAAACCACGGCAACCAA
CCGCTTCCTCGACGCTCAATCGCGGAAGTCGTCGGGGCCTGCGGTCTCAG
GCCGCGGGGCGGCGATGGTGGCGGCCAGCACCGTTCAGTGTTTCAACTGC
CAAGAATACGGTCATTACCAGCGTGACTGCCCTCAAAATGTCATCGACTT
CCTGGCTACGCTGGACGACCTCCGGCTTCGTCTCGAGGAGATGGGGGAGC
CCACGACCGATGAAACATACGAGGACCTCGTGATGGTCGCCCTTACGAGT
TCGCCCGAATACTCGTTCCTACGCGAAATGAACAATCGCACTCAGTTCCT
CGACGTCGACGAGCTCAAAACCACGGCAACCAACCGCTTCCTCGACGCTC
AATCGCGGAAGTCGTCGGGGCCTGCGGTCTCAGGCCGCGGGGCGGCGATG
GTGGCGGCCAGCACCGTTCAGTGTTTCAACTGCCAAGAATACGGTCATTA
CCAGCGTGACTGCCCTGCTTCGCTACCGGCGGCGGCCGCGGCGGTTTCTG
GGAAGCCGGCCGCGCCTGCGTCCAGTGAGCCGTCCGCACTGGTGTCTGCT
TCGCTACCGGCGGCGGCCGCGGCGGTTTCTGGGAAGCCGGCCGCGCCTGC
GTCCAGTGAGCCGTCCGCACTGGTGTCT
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