mRNA_C-linearis_contig90.16775.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 168 bits (426), Expect = 2.360e-46 Identity = 92/112 (82.14%), Postives = 96/112 (85.71%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
TPLM A TMGYLRVVRVLLRLGA VSVADNDGATA+HL IVNKH AVS+ALVKAGA +EAR GVDGTPLHVA AKG HKGMV+LIHAGANVDSEQEG ATPLYISA
Sbjct: 41 TPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISA 145
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 148 bits (374), Expect = 6.190e-41 Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 16 ASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAG 282
ASTMGYLRVVRVLLRLGA VS ADNDGATA+HL IVNKH AVS+ALVKAGADLEAR DHHQALGV TPLHVA AKG HKGMV+LIHAG
Sbjct: 38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 139 bits (350), Expect = 1.300e-39 Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAG 282
TPLM ASTMGYLRVVRVLLRLGA VSVADNDGATA+HL IVNKH AVS+ALVKAGA +EAR GVDGTPLHVA AKG HKGMV+LIHAG
Sbjct: 41 TPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 130 bits (326), Expect = 5.780e-36 Identity = 73/95 (76.84%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGA 285
TPLM ASTMGYLRVVRVLLR GA VSVADNDGATA+HL IV KH AVS ALVKAGA +EAR GVDGTPLHVA AKG HKGMV+LIH A
Sbjct: 41 TPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHVDA 128
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.950e-33 Identity = 76/112 (67.86%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
TPLM+ASTMGYLRV RVLLRLGAGVSVADNDGATA+HL + N+H AVS+AL+KAGA++EAR VDG MVVLIHAGANVDSEQE GATPLY SA
Sbjct: 33 TPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARC-------VDG--------------MVVLIHAGANVDSEQESGATPLYTSA 123
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.210e-26 Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSD--HHQALGVDG-TPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
T LM A+ GYLR+VRVLLR GA VSV+ +DG TA+H I ++ AV++AL+KAGA++EA++D ++ V G TPLH+A +G +GMV LI+AGANVDS G+T +YI+A
Sbjct: 54 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAA 168
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12 Identity = 48/115 (41.74%), Postives = 59/115 (51.30%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSD--HHQALGVDG-TPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
T LM A+ GYLR+VRVLLR GA VSV+ +DG ++D H V G TPLH+A +G GMV LI AGANVDS G+T +YI+A
Sbjct: 41 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAA 155
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.200e-10 Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDH-----HQALGVDGTPLHVAV--AKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
+PL +A + + R LL+ GA V D G TA+H P V EALV AGADLEARS H+ V TPLH+A + M +L+ GA+V++ G TPL+I A
Sbjct: 242 SPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVA 360
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A7W0TRP5_9ACTN (Ankyrin repeat domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0TRP5_9ACTN) HSP 1 Score: 61.2 bits (147), Expect = 5.320e-9 Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 16 ASTMGYLRVVRVLLRLG-AGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLY 327
A+ G L + LLR A V+ DG T +HL + PAV+EAL++ GADLE RS++ A PL AV G + +L+ AGA+ + + EGG TPL+
Sbjct: 65 AAAFGRLPRMHELLREDPARVNELSTDGFTPLHLACFSGGPAVTEALIRRGADLERRSENRFARV---RPLGTAVFSGDRESARLLLEAGADPNGQGEGGFTPLH 166
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: UPI001BB1E411 (putative ankyrin repeat protein RF_0381 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1E411) HSP 1 Score: 57.0 bits (136), Expect = 3.880e-7 Identity = 32/96 (33.33%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 28 GYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGM-VVLIHAGANVDSEQEGG 312
G ++ V+ L++ GA ++ AD DG T +H+ + N ++E L++ GAD+E + + + TPLH+A A G K M ++L H G +GG
Sbjct: 15 GKIKEVKQLIKHGANINEADQDGYTCLHIAVENNQKDITEFLIENGADVEKTTSN---MSKGQTPLHLAAAAGHLKMMNLILSHGGELNKGNNDGG 107 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig90.16775.1 >prot_C-linearis_contig90.16775.1 ID=prot_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp MMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKback to top mRNA from alignment at C-linearis_contig90:424213..424548- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig90.16775.1 ID=mRNA_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at C-linearis_contig90:424213..424548- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig90:424213..424548- >mRNA_C-linearis_contig90.16775.1 ID=mRNA_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig90:424213..424548- (Chordaria linearis ClinC8C monoicous)back to top |