mRNA_C-linearis_contig90.16775.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16775.1
Unique NamemRNA_C-linearis_contig90.16775.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.360e-46
Identity = 92/112 (82.14%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
            TPLM A TMGYLRVVRVLLRLGA VSVADNDGATA+HL IVNKH AVS+ALVKAGA +EAR       GVDGTPLHVA AKG HKGMV+LIHAGANVDSEQEG ATPLYISA
Sbjct:   41 TPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAGANVDSEQEGRATPLYISA 145          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 6.190e-41
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 1
Query:   16 ASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAG 282
            ASTMGYLRVVRVLLRLGA VS ADNDGATA+HL IVNKH AVS+ALVKAGADLEAR DHHQALGV  TPLHVA AKG HKGMV+LIHAG
Sbjct:   38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.300e-39
Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAG 282
            TPLM ASTMGYLRVVRVLLRLGA VSVADNDGATA+HL IVNKH AVS+ALVKAGA +EAR       GVDGTPLHVA AKG HKGMV+LIHAG
Sbjct:   41 TPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHAG 127          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.780e-36
Identity = 73/95 (76.84%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGA 285
            TPLM ASTMGYLRVVRVLLR GA VSVADNDGATA+HL IV KH AVS ALVKAGA +EAR       GVDGTPLHVA AKG HKGMV+LIH  A
Sbjct:   41 TPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR-------GVDGTPLHVAAAKGFHKGMVMLIHVDA 128          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.950e-33
Identity = 76/112 (67.86%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
            TPLM+ASTMGYLRV RVLLRLGAGVSVADNDGATA+HL + N+H AVS+AL+KAGA++EAR        VDG              MVVLIHAGANVDSEQE GATPLY SA
Sbjct:   33 TPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARC-------VDG--------------MVVLIHAGANVDSEQESGATPLYTSA 123          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.210e-26
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSD--HHQALGVDG-TPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
            T LM A+  GYLR+VRVLLR GA VSV+ +DG TA+H  I  ++ AV++AL+KAGA++EA++D    ++  V G TPLH+A  +G  +GMV LI+AGANVDS    G+T +YI+A
Sbjct:   54 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAA 168          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 48/115 (41.74%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSD--HHQALGVDG-TPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
            T LM A+  GYLR+VRVLLR GA VSV+ +DG                            ++D  H     V G TPLH+A  +G   GMV LI AGANVDS    G+T +YI+A
Sbjct:   41 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAA 155          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-10
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1
Query:    1 TPLMMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDH-----HQALGVDGTPLHVAV--AKGIHKGMVVLIHAGANVDSEQEGGATPLYISA 336
            +PL +A +     + R LL+ GA V   D  G TA+H       P V EALV AGADLEARS       H+   V  TPLH+A    +     M +L+  GA+V++    G TPL+I A
Sbjct:  242 SPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVA 360          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: A0A7W0TRP5_9ACTN (Ankyrin repeat domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0TRP5_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 5.320e-9
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   16 ASTMGYLRVVRVLLRLG-AGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEGGATPLY 327
            A+  G L  +  LLR   A V+    DG T +HL   +  PAV+EAL++ GADLE RS++  A      PL  AV  G  +   +L+ AGA+ + + EGG TPL+
Sbjct:   65 AAAFGRLPRMHELLREDPARVNELSTDGFTPLHLACFSGGPAVTEALIRRGADLERRSENRFARV---RPLGTAVFSGDRESARLLLEAGADPNGQGEGGFTPLH 166          
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Match: UPI001BB1E411 (putative ankyrin repeat protein RF_0381 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1E411)

HSP 1 Score: 57.0 bits (136), Expect = 3.880e-7
Identity = 32/96 (33.33%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   28 GYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVKAGADLEARSDHHQALGVDGTPLHVAVAKGIHKGM-VVLIHAGANVDSEQEGG 312
            G ++ V+ L++ GA ++ AD DG T +H+ + N    ++E L++ GAD+E  + +   +    TPLH+A A G  K M ++L H G       +GG
Sbjct:   15 GKIKEVKQLIKHGANINEADQDGYTCLHIAVENNQKDITEFLIENGADVEKTTSN---MSKGQTPLHLAAAAGHLKMMNLILSHGGELNKGNNDGG 107          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE2.360e-4682.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE6.190e-4186.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI1.300e-3980.85EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI5.780e-3676.84EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1W5_9PHAE1.950e-3367.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE4.210e-2653.04Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LP44_ECTSI1.430e-1241.74EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LH19_ECTSI1.200e-1039.50Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7W0TRP5_9ACTN5.320e-940.00Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI001BB1E4113.880e-733.33putative ankyrin repeat protein RF_0381 n=1 Tax=Ly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:424213..424548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.4e-29
Seed eggNOG ortholog2880.D7G449
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.7029412-CDS-C-linearis_contig90:424212..4245391622930775.7029412-CDS-C-linearis_contig90:424212..424539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 424213..424539 -
1690881244.143731-CDS-C-linearis_contig90:424212..4245391690881244.143731-CDS-C-linearis_contig90:424212..424539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 424213..424539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.7200983-UTR-C-linearis_contig90:424539..4245481622930775.7200983-UTR-C-linearis_contig90:424539..424548Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 424540..424548 -
1690881244.155043-UTR-C-linearis_contig90:424539..4245481690881244.155043-UTR-C-linearis_contig90:424539..424548Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 424540..424548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16775.1prot_C-linearis_contig90.16775.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 424213..424539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16775.1

>prot_C-linearis_contig90.16775.1 ID=prot_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MMASTMGYLRVVRVLLRLGAGVSVADNDGATAIHLPIVNKHPAVSEALVK
AGADLEARSDHHQALGVDGTPLHVAVAKGIHKGMVVLIHAGANVDSEQEG
GATPLYISA
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mRNA from alignment at C-linearis_contig90:424213..424548-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16775.1 ID=mRNA_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at C-linearis_contig90:424213..424548- (Chordaria linearis ClinC8C monoicous)
ACCCCCCTGATGATGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGT CCTTTTGAGACTGGGGGCCGGTGTGTCGGTGGCGGACAATGACGGTGCGA CAGCTATACACCTGCCGATTGTCAATAAACACCCGGCCGTCAGCGAGGCT CTGGTCAAGGCCGGTGCGGACCTTGAAGCTAGGAGCGACCACCACCAAGC GCTTGGTGTAGACGGTACGCCGCTTCACGTGGCCGTGGCGAAAGGAATTC ACAAAGGAATGGTGGTGCTGATCCACGCGGGTGCGAATGTCGACAGTGAG CAAGAAGGCGGAGCGACACCCCTGTACATTTCGGCA
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Coding sequence (CDS) from alignment at C-linearis_contig90:424213..424548-

>mRNA_C-linearis_contig90.16775.1 ID=mRNA_C-linearis_contig90.16775.1|Name=mRNA_C-linearis_contig90.16775.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig90:424213..424548- (Chordaria linearis ClinC8C monoicous)
ATGATGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGTCCTTTTGAG
ACTGGGGGCCGGTGTGTCGGTGGCGGACAATGACGGTGCGACAGCTATAC
ACCTGCCGATTGTCAATAAACACCCGGCCGTCAGCGAGGCTCTGGTCAAG
GCCGGTGCGGACCTTGAAGCTAGGAGCGACCACCACCAAGCGCTTGGTGT
AGACGGTACGCCGCTTCACGTGGCCGTGGCGAAAGGAATTCACAAAGGAA
TGGTGGTGCTGATCCACGCGGGTGCGAATGTCGACAGTGAGCAAGAAGGC
GGAGCGACACCCCTGTACATTTCGGCAATGATGGCCTCCACCATGGGATA
CTTGCGGGTCGTAAGGGTCCTTTTGAGACTGGGGGCCGGTGTGTCGGTGG
CGGACAATGACGGTGCGACAGCTATACACCTGCCGATTGTCAATAAACAC
CCGGCCGTCAGCGAGGCTCTGGTCAAGGCCGGTGCGGACCTTGAAGCTAG
GAGCGACCACCACCAAGCGCTTGGTGTAGACGGTACGCCGCTTCACGTGG
CCGTGGCGAAAGGAATTCACAAAGGAATGGTGGTGCTGATCCACGCGGGT
GCGAATGTCGACAGTGAGCAAGAAGGCGGAGCGACACCCCTGTACATTTC
GGCA
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