mRNA_C-linearis_contig90.16768.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16768.1
Unique NamemRNA_C-linearis_contig90.16768.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:263554..264546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size801
Cds size801
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.1121082-CDS-C-linearis_contig90:263553..2640511622930769.1121082-CDS-C-linearis_contig90:263553..264051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 263554..264051 -
1690881240.2956448-CDS-C-linearis_contig90:263553..2640511690881240.2956448-CDS-C-linearis_contig90:263553..264051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 263554..264051 -
1622930769.1482651-CDS-C-linearis_contig90:264243..2645461622930769.1482651-CDS-C-linearis_contig90:264243..264546Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 264244..264546 -
1690881240.3080363-CDS-C-linearis_contig90:264243..2645461690881240.3080363-CDS-C-linearis_contig90:264243..264546Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 264244..264546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16768.1prot_C-linearis_contig90.16768.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 263554..264546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16768.1

>prot_C-linearis_contig90.16768.1 ID=prot_C-linearis_contig90.16768.1|Name=mRNA_C-linearis_contig90.16768.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=267bp
VIKELLRNGEEVDAGDKNGQNSLYMTASFGDLGAVQALLDAGADMALLDD
MTGFTPLHAAVKGGHDDVVSVLLKKGTKMEDKDDIGATPLRLAIAFGHSS
IVVDVLVRAGADIESCDSENYTALHQAAIRGDNDMVLACMNQGANIEALA
GGRTALCLAAVCRRTITVKLLLDAGANINHSRGEDSGLTALAHAAGNGDT
VTLRLLLERGASVGVLSVEGYSPLHCVCGMRPAGAEDAVDFLLRAGADET
LQSSNGNTAEEILYSD*
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mRNA from alignment at C-linearis_contig90:263554..264546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16768.1 ID=mRNA_C-linearis_contig90.16768.1|Name=mRNA_C-linearis_contig90.16768.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=993bp|location=Sequence derived from alignment at C-linearis_contig90:263554..264546- (Chordaria linearis ClinC8C monoicous)
GTCATCAAGGAGCTCCTGCGGAACGGCGAGGAAGTAGATGCCGGTGACAA
AAACGGGCAAAATTCGCTCTACATGACAGCCAGTTTCGGCGACCTCGGTG
CAGTTCAAGCCCTGCTGGACGCCGGCGCTGACATGGCGCTTCTCGATGAC
ATGACCGGCTTCACCCCGCTGCACGCGGCCGTAAAGGGTGGGCATGACGA
TGTGGTTTCGGTGCTGCTCAAGAAGGGGACCAAGATGGAGGACAAGGACG
ACATTGGCGCGACGCCGCTGCGTCTCGCCATAGCGTTTGGCCACTCGAGC
ATCGTGAACACCCTGTTGTGCGCCGGCTCAGGCGTGGACGCGCCGCAGAT
GGGCGGGGATATCATCCATCTTGCCGTTCGACTCGGCAACACGTCGATCG
CGTCTTCGCTGCTAGCGAGCGGGGCCAACCTCAACTCCATCAACCGCCGC
GGCGGCACGCCTCTGCACGGCGCGATCGAGAGCGGCCATTTCGAGGTCGT
TGATGTTCTGGTTCGCGCAGGTGCCGACATCGAAAGTTGTGACAGCGAAA
ACTACACGGCCCTCCACCAGGCGGCCATCAGGGGGGACAACGACATGGTG
TTGGCTTGTATGAACCAAGGGGCCAATATTGAGGCGTTAGCCGGAGGCAG
AACGGCGCTGTGCCTCGCGGCCGTCTGTCGCCGAACGATCACCGTAAAAC
TCCTCTTGGACGCCGGAGCCAACATCAACCATTCGCGCGGCGAGGACAGC
GGGCTTACCGCCCTAGCACATGCCGCGGGTAACGGGGACACGGTAACCCT
GCGGTTGTTGCTGGAGCGAGGTGCGAGCGTGGGCGTATTAAGTGTGGAGG
GATACTCGCCACTTCACTGCGTGTGTGGCATGCGCCCCGCGGGTGCTGAA
GACGCCGTCGACTTTCTGCTCCGGGCTGGCGCAGACGAGACCCTTCAGTC
TTCCAACGGCAACACTGCAGAGGAAATTCTCTACTCAGACTAG
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Coding sequence (CDS) from alignment at C-linearis_contig90:263554..264546-

>mRNA_C-linearis_contig90.16768.1 ID=mRNA_C-linearis_contig90.16768.1|Name=mRNA_C-linearis_contig90.16768.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at C-linearis_contig90:263554..264546- (Chordaria linearis ClinC8C monoicous)
GTCATCAAGGAGCTCCTGCGGAACGGCGAGGAAGTAGATGCCGGTGACAA
AAACGGGCAAAATTCGCTCTACATGACAGCCAGTTTCGGCGACCTCGGTG
CAGTTCAAGCCCTGCTGGACGCCGGCGCTGACATGGCGCTTCTCGATGAC
ATGACCGGCTTCACCCCGCTGCACGCGGCCGTAAAGGGTGGGCATGACGA
TGTGGTTTCGGTGCTGCTCAAGAAGGGGACCAAGATGGAGGACAAGGACG
ACATTGGCGCGACGCCGCTGCGTCTCGCCATAGCGTTTGGCCACTCGAGC
ATCGTCATCAAGGAGCTCCTGCGGAACGGCGAGGAAGTAGATGCCGGTGA
CAAAAACGGGCAAAATTCGCTCTACATGACAGCCAGTTTCGGCGACCTCG
GTGCAGTTCAAGCCCTGCTGGACGCCGGCGCTGACATGGCGCTTCTCGAT
GACATGACCGGCTTCACCCCGCTGCACGCGGCCGTAAAGGGTGGGCATGA
CGATGTGGTTTCGGTGCTGCTCAAGAAGGGGACCAAGATGGAGGACAAGG
ACGACATTGGCGCGACGCCGCTGCGTCTCGCCATAGCGTTTGGCCACTCG
AGCATCGTCGTTGATGTTCTGGTTCGCGCAGGTGCCGACATCGAAAGTTG
TGACAGCGAAAACTACACGGCCCTCCACCAGGCGGCCATCAGGGGGGACA
ACGACATGGTGTTGGCTTGTATGAACCAAGGGGCCAATATTGAGGCGTTA
GCCGGAGGCAGAACGGCGCTGTGCCTCGCGGCCGTCTGTCGCCGAACGAT
CACCGTAAAACTCCTCTTGGACGCCGGAGCCAACATCAACCATTCGCGCG
GCGAGGACAGCGGGCTTACCGCCCTAGCACATGCCGCGGGTAACGGGGAC
ACGGTAACCCTGCGGTTGTTGCTGGAGCGAGGTGCGAGCGTGGGCGTATT
AAGTGTGGAGGGATACTCGCCACTTCACTGCGTGTGTGGCATGCGCCCCG
CGGGTGCTGAAGACGCCGTCGACTTTCTGCTCCGGGCTGGCGCAGACGAG
ACCCTTCAGTCTTCCAACGGCAACACTGCAGAGGAAATTCTCTACTCAGA
CTAGGTCGTTGATGTTCTGGTTCGCGCAGGTGCCGACATCGAAAGTTGTG
ACAGCGAAAACTACACGGCCCTCCACCAGGCGGCCATCAGGGGGGACAAC
GACATGGTGTTGGCTTGTATGAACCAAGGGGCCAATATTGAGGCGTTAGC
CGGAGGCAGAACGGCGCTGTGCCTCGCGGCCGTCTGTCGCCGAACGATCA
CCGTAAAACTCCTCTTGGACGCCGGAGCCAACATCAACCATTCGCGCGGC
GAGGACAGCGGGCTTACCGCCCTAGCACATGCCGCGGGTAACGGGGACAC
GGTAACCCTGCGGTTGTTGCTGGAGCGAGGTGCGAGCGTGGGCGTATTAA
GTGTGGAGGGATACTCGCCACTTCACTGCGTGTGTGGCATGCGCCCCGCG
GGTGCTGAAGACGCCGTCGACTTTCTGCTCCGGGCTGGCGCAGACGAGAC
CCTTCAGTCTTCCAACGGCAACACTGCAGAGGAAATTCTCTACTCAGACT
AG
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