mRNA_C-linearis_contig90.16765.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Match: D7FTD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD3_ECTSI) HSP 1 Score: 553 bits (1426), Expect = 6.880e-179 Identity = 291/431 (67.52%), Postives = 340/431 (78.89%), Query Frame = 1
Query: 1 MHTSSRLSVADARAIIGLPGARGSATIASDASSFEREYASRT-LGGSMLPPTRELGSTLKSRFAAIARKNGASHKETRGRGRSLVGRRANLEEGRPYDRDGNGPSAEERRALSLPIQRFQKTGRRVVRQCLERSLELAPINKERLGRLGSLELMDGDLESAVEHLRLATKGSNDDAAWVALARAEVRLWERDPAIGHEHLRCACDAYRHSIDLLEPGFVQALELPTRLLELGGVYESFGSFEGALYIYQRTASSMPLSSGFEDVLFRCAVVMRYMSTLERAPRESLLQSALEHLDLILQEQTMRKGRSVQTAWLLYADICLSLGEGSAVAKAWAKSAYQEVFNNRQRQGDTNAMAFGDWDDWIASPDTQLQFAKEWGERGEPALAFLAFEKSIKAFDLENETSPGSTAGPPFDALMDASEALASFQRFSRQ 1290
M TS+RLSV DARAI+GLP RGS++ +D S ++ AS L GS+ RE G TLKSRFA++ARK+GA KETR GRSLVGRRANLE D D SA + L P+QRFQK GR++VRQ L+ L+ P +++ LGRLGSLE+ DGDLE+A+EHLRLA KGS+DD AW LARAEVR WE+DPA GHE LR ACDAYR S+DLLEPGFVQ ELP RLLELGGVYESFGSFEGAL+IYQR ASSMPLSSGFE VLFRCAVVMRYM+TLERAPR LL+SALEHLDLI+QEQ +RKG ++A LLYAD+C++L EGSAVAK WAK++YQEVF+NR+ QGD +AM F DWDDWIASP+TQLQ +KEW ++GEPALA LAFEK+++AF + E SP S A P F ALMDASEA ASFQRF RQ
Sbjct: 1 MLTSNRLSVVDARAIVGLPAVRGSSSSTTDLSPLDQHRASPAHLDGSVPLLGREFGGTLKSRFASLARKSGADRKETRDHGRSLVGRRANLEGRLGDDGDPGRVSAGTQEPLVSPLQRFQKAGRKIVRQGLQHRLQATPDDRKLLGRLGSLEVADGDLENAIEHLRLAAKGSDDDVAWTTLARAEVRAWEQDPATGHERLRWACDAYRRSVDLLEPGFVQVWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEGVLFRCAVVMRYMATLERAPRNGLLESALEHLDLIMQEQALRKGFFAESAALLYADVCMALAEGSAVAKGWAKASYQEVFDNRKAQGDKHAMTFRDWDDWIASPETQLQLSKEWSQKGEPALAVLAFEKALEAFGRQKEISPSSKAEPSFSALMDASEAYASFQRFVRQ 431
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Match: A0A6H5KAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC9_9PHAE) HSP 1 Score: 375 bits (962), Expect = 5.790e-107 Identity = 248/571 (43.43%), Postives = 318/571 (55.69%), Query Frame = 1
Query: 3295 MKPSAPGSHFFPPFVSAGASGEAVSVSSPVVFEMVQDAADDEENXXXXXXXXAVGVADNGVAGRGAGWHGLMLYSRRPGISHKSPVFQQAIQLATIAFSPDVRHPPPPSSPALAFSLPCLGSTSDRADESRCLKPTLTTTAALDGPLPSSARRART---LYIRRQGGPAHLAGRKKGRSGFDLKTRPQLLGDF-TLVRTPGRE-KQVARVKVKTSSGGNLAP------VVRSLTPPPAPLKMTAGVDVDGTISMTPASMLAALQPARVFDSGDMMMAAGLLGHPESSLKRLVLHRARINTAAGREAFLRCLAINKLGCLALGACTWLEDAGANKPENARQQELQSGRWWEEVCDTIRTKAFRLQELVVEGLDQGGDALGNALGVTLDDYFVNRFGNLSSIVVVRCKISDEGAVAIARGIYASNTLAHVDLSANKISDVGVEALAKVLVGEYPGGRDDGDAEQDAKSHGNEQLVIHHHEEGWPCRRAPVLKTLDLGQNRMMDPGGQALAAALPRSMSLESLTXXXXXXXXXXXXXXLAGAAASQATLRDIHCEGNLFGNDMCGRIALTLMHR 4974
+PSAPGS FFPPF A+ + ++ +PVVFEMVQDAADDEE+ ADN AGR GWHGL LY R PG+ +S VFQQA+QL TIAFSPDV+ PP + P PC G S R ++ ++P T A R + + P AGR+K R+ K RP+ + +L RTP E +Q +V+V + P VV+S TP P T DG+IS+TPA + A + +FDSGDM+M A LL HPE SLK LVLHRA+++T GREA L+CL +NKL LALG C W + A + + +RQ E +GRWWE+VCDTIRT AFRL+E+VVEGL++GGDALG +G L DYF RFG L+S+ +VRC ISD+GA A+ARGI+AS+ L HVDLS +L + W R + QNR+ DPGG L AALPRS+SLES+T L+ AA+S+ TL+++HCEGNLF D+CG IA L R
Sbjct: 252 FEPSAPGSRFFPPFGHTDAASDG-ALCAPVVFEMVQDAADDEEDADG---------ADNDAAGRVRGWHGLTLY-RSPGVDQRSAVFQQALQLETIAFSPDVQTPPRSTPP----ESPCRGLGSSRMYDASSVRPQPATAFCHRQSASCRALACRDQERIGLGMSSLPERGAGRQKRRTDIASKPRPRPWDELESLARTPRVETEQEQQVRVVGGTYFATPPELHRYGVVKS-TPSPPQFTTTKP---DGSISVTPAPLHVASAASTLFDSGDMIMVARLLAHPECSLKGLVLHRAKLDTPPGREALLKCLELNKLCRLALGGCVWFDHA--LRTDKSRQYEWLTGRWWEKVCDTIRTNAFRLREVVVEGLERGGDALGTGIGTMLGDYFAKRFGRLASVSLVRCGISDQGATAVARGIWASSGLTHVDLS---------------------------------------ELCLRR----WSIR---------VNQNRITDPGGTMLGAALPRSVSLESITLSYNFMMEEAAQALLSAAASSRPTLKEVHCEGNLFDEDLCGHIAQALKRR 749
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Match: A0A6H5K7H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H6_9PHAE) HSP 1 Score: 305 bits (781), Expect = 4.240e-82 Identity = 175/284 (61.62%), Postives = 196/284 (69.01%), Query Frame = 1
Query: 1 MHTSSRLSVADARAIIGLPGARGSATIASDASSFEREYASRTLGGSMLP-PTRELGSTLKSRFAAIARKNGASHKETRGRGRSLVGRRANLEEGRPYDRDGNGPSAEERRALSLPIQRFQKTGRRVVRQCLERSLELAPINKERLGRLGSLELMDGDLESAVEHLRLATKGSNDDAAWVALARAEVRLWERDPAIGHEHLRCACDAYRHSIDLLEPGFVQALELPTRLLELGGVYESFGSFEGALYIYQRTASSMPLSSGFEDVLFRCAVVMRYMSTLERAPRE 849
M TS+RLSVADARAI+GLP + S+ +D S ++ +AS +P P RE G TLKSRFAA+ARK GA KETR RSLVGRRANLE D D S + L P+QR + LGRLGSLE+ DGDLE+AVEHLRLA KGS+DD AW LARAEVR W++DPA GHE LR ACDAYR S+DLLEPGFVQ ELP RLLELGGVYESFGSFEGAL+IYQR ASSMPLSSGFEDVLFRCAVVMRYM+TL P E
Sbjct: 1 MLTSNRLSVADARAIVGLPAVQESSASTTDLSPLDQRHASPACWDGSVPLPAREFGGTLKSRFAALARKRGAERKETRDHRRSLVGRRANLEGRLGGDGDPGRVSPGTQEPLVSPVQR------------------------KLLGRLGSLEVADGDLENAVEHLRLAAKGSDDDVAWTTLARAEVRAWQQDPATGHERLRWACDAYRRSVDLLEPGFVQVWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEDVLFRCAVVMRYMATLAFLPLE 260
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Match: D7FTD1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD1_ECTSI) HSP 1 Score: 242 bits (618), Expect = 6.230e-68 Identity = 156/391 (39.90%), Postives = 208/391 (53.20%), Query Frame = 1
Query: 3787 PAHLAGRKKGRSGFDLKTRPQLLGDFTLVRTPGREKQVARVKVKTSSGGNLAP-------VVRSLTPPPAPLKMTAGVDVDGTISMTPASMLAALQPARVFDSGDMMMAAGLLGHPESSLKRLVLHRARINTAAGREAFLRCLAINKLGCLALGACTWLEDAGANKPENARQQELQSGRWWEEVCDTIRTKAFRLQELVVEGLDQGGDALGNALGVTLDDYFVNRFGNLSSIVVVRCKISDEGAVAIARGIYASNTLAHVDLSANKISDVGVEALAKVLVGEYPGGRDDGDAEQDAKSHGNEQLVIHHHEEGWPCRRAPVLKTLDLGQNRMMDPGGQALAAALPRSMSLESLTXXXXXXXXXXXXXXLAGAAASQATLRDIHCEGNLFGND 4938
P AGR+KGR+ K RP+ + + RE++ +V+ G A VV+S+ P+P + T DG +S+T A + A + + +FDSGDM+M A LL HPE SLK VLHRA+++T GREA L+CL +NKL LALG C W +DA + +N+RQ E ++GRWWE+VCDTIRT AFRL+E+VVEGL++ AN ISDVGVEALA+ LVG+YP D+G E+ HEE + R P++KTLDLGQNR+ DPGG L AALPRS+ LES+T L+ AA+S+ TL++IHCEGNLF +
Sbjct: 5 PERGAGRQKGRTDDASKPRPRPWDELESLEHTRREEREQEQQVRDVGGTYFATPELHHYGVVKSI---PSPPQFTT-TKPDGAMSVTTAPLHVASEASTLFDSGDMIMVAALLAHPECSLKGFVLHRAKLDTPPGREALLKCLELNKLSRLALGGCVWFDDA--MRTDNSRQYEWRTGRWWEKVCDTIRTSAFRLREVVVEGLER----------------------------------------------------------ANAISDVGVEALAQALVGDYPLDLDEG-----------EEGASGSHEEPFRSHRPPLIKTLDLGQNRITDPGGTTLGAALPRSVFLESITLSYNFMMEEAAQALLSAAASSRPTLKEIHCEGNLFDEE 320
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Match: D7FTD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD2_ECTSI) HSP 1 Score: 192 bits (487), Expect = 1.720e-50 Identity = 117/197 (59.39%), Postives = 145/197 (73.60%), Query Frame = 1
Query: 1933 RKMKAVVVHVQCQMRRYLARRELDRRVKLAAERTRAASFIQHAYRARTLQWGYAIAKAQRAREREIAEAKLGAAGKLQATWRMKLGGNVANRRRRAIVDIQRSSRAFLTRKHAGARKNRLVPRYKRQYRRHLERFAILRALMAMRISRELREARAKEVERRFRAMEEERPLGGTGGGAAI-TPLEARRAARANQRLL 2520
R+ KA + +QCQ+RR+ ARRE+DRR+ AA+R RAA+FIQ YRAR LQW YA+ +AQ ARER+IA+AKLG++ KLQATWRMK RRRA+ DIQRS+R FL R+ A RK+ LV R +RQYRRH ER IL AL+A +E RA+EVERRFRA+EE+R LG T G AI TPL+ RRA RA++RLL
Sbjct: 27 RQRKAAAIRLQCQLRRFFARREVDRRISHAAQRIRAATFIQRVYRARALQWSYAVKRAQLARERKIAKAKLGSSIKLQATWRMKQARYEVVVRRRAVSDIQRSTRGFLGRRRAAERKHALVTRIQRQYRRHRERMVILTALLAXXXXXXXKEERAREVERRFRALEEQR-LGNTSGSEAIATPLDKRRAERAHKRLL 222 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig90.16765.1 >prot_C-linearis_contig90.16765.1 ID=prot_C-linearis_contig90.16765.1|Name=mRNA_C-linearis_contig90.16765.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1680bp MHTSSRLSVADARAIIGLPGARGSATIASDASSFEREYASRTLGGSMLPPback to top mRNA from alignment at C-linearis_contig90:213235..229417- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig90.16765.1 ID=mRNA_C-linearis_contig90.16765.1|Name=mRNA_C-linearis_contig90.16765.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=16183bp|location=Sequence derived from alignment at C-linearis_contig90:213235..229417- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig90:213235..229417- >mRNA_C-linearis_contig90.16765.1 ID=mRNA_C-linearis_contig90.16765.1|Name=mRNA_C-linearis_contig90.16765.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=10080bp|location=Sequence derived from alignment at C-linearis_contig90:213235..229417- (Chordaria linearis ClinC8C monoicous)back to top |