mRNA_C-linearis_contig90.16759.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16759.1
Unique NamemRNA_C-linearis_contig90.16759.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig90.16759.1 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.890e-29
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  566 MELILTSFLSPILWAIPQGAVQNMMINLHPTDLTQVACVCQDWRQLAQDVPTLAPGVVD 742
            MELILTSFLSPILW IP+GAVQNMM NLHPTDLTQVACVCQDWRQLAQDVP LAPGVVD
Sbjct:    1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE7.890e-2993.22F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:120184..124842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_000830.1
Exons4
Model size2253
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16759.1prot_C-linearis_contig90.16759.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 121692..124799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.000385-UTR-C-linearis_contig90:120183..1216911622930771.000385-UTR-C-linearis_contig90:120183..121691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 120184..121691 -
1690881241.2187374-UTR-C-linearis_contig90:120183..1216911690881241.2187374-UTR-C-linearis_contig90:120183..121691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 120184..121691 -
1622930771.1010268-UTR-C-linearis_contig90:124799..1248421622930771.1010268-UTR-C-linearis_contig90:124799..124842Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 124800..124842 -
1690881241.2839441-UTR-C-linearis_contig90:124799..1248421690881241.2839441-UTR-C-linearis_contig90:124799..124842Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 124800..124842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930771.0181894-CDS-C-linearis_contig90:121691..1217661622930771.0181894-CDS-C-linearis_contig90:121691..121766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 121692..121766 -
1690881241.2375944-CDS-C-linearis_contig90:121691..1217661690881241.2375944-CDS-C-linearis_contig90:121691..121766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 121692..121766 -
1622930771.0379777-CDS-C-linearis_contig90:122512..1226331622930771.0379777-CDS-C-linearis_contig90:122512..122633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 122513..122633 -
1690881241.247065-CDS-C-linearis_contig90:122512..1226331690881241.247065-CDS-C-linearis_contig90:122512..122633Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 122513..122633 -
1622930771.0578482-CDS-C-linearis_contig90:123098..1233741622930771.0578482-CDS-C-linearis_contig90:123098..123374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 123099..123374 -
1690881241.2657487-CDS-C-linearis_contig90:123098..1233741690881241.2657487-CDS-C-linearis_contig90:123098..123374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 123099..123374 -
1622930771.0821157-CDS-C-linearis_contig90:124569..1247991622930771.0821157-CDS-C-linearis_contig90:124569..124799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 124570..124799 -
1690881241.274922-CDS-C-linearis_contig90:124569..1247991690881241.274922-CDS-C-linearis_contig90:124569..124799Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 124570..124799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16759.1

>prot_C-linearis_contig90.16759.1 ID=prot_C-linearis_contig90.16759.1|Name=mRNA_C-linearis_contig90.16759.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=234bp
MARQQLSDLPKEVMWRVIQFVDESHRVQCKMISRRWQHYGLNRGRGNATA
LRKAKGTLPNELLVGLVLQFLDEPDDGDRLRHIAKVWAAYLQRAAAAAAA
AAAMAAAGGGEEGADSLPPLLPGMPMGFGPATEPGPLDTTGRLPNELLES
MFDYLDEDMTMNCASVARRWRSSAMELILTSFLSPILWAIPQGAVQNMMI
NLHPTDLTQVACVCQDWRQLAQDVPTLAPGVVD*
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mRNA from alignment at C-linearis_contig90:120184..124842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16759.1 ID=mRNA_C-linearis_contig90.16759.1|Name=mRNA_C-linearis_contig90.16759.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4659bp|location=Sequence derived from alignment at C-linearis_contig90:120184..124842- (Chordaria linearis ClinC8C monoicous)
CCTGTTGCCTCTCGTCGCGGACGTGCGAGAGATTTCGCAAAGAATGGCCA
GGCAGCAGCTATCGGATCTACCCAAGGAGGTGATGTGGAGGGTGATCCAG
TTCGTGGACGAGTCGCATCGCGTGCAGTGCAAGATGATCTCGCGCCGTTG
GCAGCACTACGGGTTGAACCGAGGCAGAGGCAACGCCACCGCGCTGAGAA
AAGCAAAGGGAACCCTACCGAACGAGCTGCTTGTCGGCCTGGTGCTTCAG
TTCTTAGACGAGCCAGACGACGGGTGAGTCTATGGCGTACGCTGTTGACA
AGGGTCAGGGGTGTAAGGAGGACCACGTGCGTAAATGTTGTCAGATTTTG
TCGGGTTGCAGTGAATGAAAAACGGTTCAAATATGCCGCTGTTCCTTCTC
TCTCTCTCAGTCGTTCGCTCGCTCCCTAACTCTCTCCTGCTCGTTTCCTT
CGCGGGGAGAGCAGGGAGAGACGGATGGATGCTCAAGAGTTGCTGGAAGG
CACTTGGTACAAACCTTATTTCTTTGACGTTCGAGAATCCCATCTTAGTA
GCTCGCGGAATTGAATGTGATATATTTCCCCCAAAACAGGACGTGAAGGT
CGGCAGACAGCAGCAGTAGTATGAGGGAGAGCTGCGATCCGTTGTGCAGG
TCCTCTCTCATCTTCATCTTCCCACGAAAATAATCTTCATGCAGACGCCC
GCCCCCGAAACCTTGATCTCTAAGGTCGCATTTCTGGAAATCAATCCTGG
AACAGGTTGAATACTGGACATGGCACCGCAGAAGCCATTTTTGTTCACCT
TGTTAGGAAAGGTGAAAGTTGACATACCATGTACATTTGTACATACGTGG
AAAGTTGCTCACCTTCTAACCTGAACACACAAACTTCAACGACGTGTGGA
CTAACGCACTAAGCAAAGCTGAAGGGTCGAGATGTGCCGAAAGAGGCCAG
ACACGATACAAGAGGGTGACTCAGGCTTGGATTGGGTGGCCTCGGCATGT
AAAATGGGAAAACAACGTTTGTACTGCTGTATCCCGCCACACGCAACGCA
TACAGAGTACGTATGCCGGCTGGAGGTGGGCTGCTGCAAGCTCTCGTTCG
TTGTGTCTGATACCTCACAGCAGCAGTGTCCCCGACAAACTACTACTGCT
GTACACCAAGCAGGAGACGGCTACTGTACCAAGCACCTGCCATAGAAGCG
GACTCCGGCAAGGTTGCTGACCGTCTGCCGAGCATCAAGTGCCCTACGCA
ACCCAGATGTCGTAGATAGGTATGTACGGGAGGGAAAACATACAGCGACG
AATCGCGGCACCCTCTGCCCTCCCCCCTCACACACACACCCATATTTTGT
AGCTGTATCTCTTTGGTTTGGATGGGAGAAAATCGCCGGCACACATAAAT
ATGTGCATACCCTGTCCCGCTGCTGTCCCCCTGTCCCTCCCTCCCCCTGT
CTTCTACAACACTCGCAGCGATCGGCTGCGACACATCGCCAAGGTGTGGG
CGGCCTACCTCCAGCGGGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGATG
GCCGCGGCGGGCGGCGGCGAAGAGGGCGCCGACTCGCTCCCTCCCTTGCT
GCCCGGCATGCCCATGGGCTTCGGGCCGGCGACGGAGCCCGGGCCGCTGG
ACACCACGGGCCGGCTCCCGAACGAGCTGCTCGAGTCCATGTTCGACTAC
CTCGACGAGGATATGACCATGAACTGCGCCTCCGTAGCTCGCAGGTGCTG
AGCTACTGTGCTTTGATTCGCGTGGCCGTACCTTGCCTACCTACATAGAT
GTATATTTCCGTTATTTGTTCCTCTTGCGGGTGTTTAGTTTGTCGTCCGG
TGGCGGGGCCGCATCTGACTGAGACAGCGAGTAGAGGGAGACCCACACAC
CAACCGGGACTTGATGGTCATGTCGGTGCCTGCTCAAGTTCTGACTGAAA
GGCTCCTTGTCGTCCTCGTACAACTACGCAACACGCATGTTTATGTATTG
GAAAATAGAAAACGCGTCGCGTAAACGCTGTCTCCTCACCGTTATCCTGC
GGCCAACCGTAGTCTGGTCTTCGTCGTCGAATGTTTCGCCATTGCGCTGA
CTGCTGACGAGCCTTTGTGTGTTCTTGAAGATCTACTGGCATGTATGATA
TGCGTGTTTGCTTTCCAACCCCATGATGGAGATGATGATGATGATGATGA
TGATGATAGGTGGAGGTCGTCGGCGATGGAGCTTATCTTGACGTCGTTCC
TGAGCCCCATCCTGTGGGCCATACCCCAGGGAGCGGTGCAGAACATGATG
ATCAACCTGCACCCGACCGACTTGACACAGGTATACTTCCAATTATGTAC
CTGTTTTCCTCTGGTGTCTTCGCTGTGCGAGGTCTCAACAGAGACGTTGG
TTGCTGCATGTTTTATTTTGTCGTGGCCGGTGGGTGCCCTTCTAACGAGG
AAGGATCGTTGAGGCGGGCACTACTACTGTACACGCATCGCCAGTAGGAA
TGACAAGGGACGCATGCATATGCACATGCATGCTTCTCATCGTGATGCCG
GGCTGCTGTCTCCGATTTCACCTCAAGAGTCAAGAGTCAAAAAGAGTCTA
GTGTTTTGTATGTTTGTTTTTTCTCTCGGAAAAACTCATTTTGAGTTGCC
GGCTCTGTCTGACCTTGCCCCCCGAGTCTAGCGCTGAATGTCAGGTCGTC
GCTGGACCACACTACACCACGCCATATCGCCTTCTTTCTTTCCAGCACTG
ATAAATAACCAACCACATAGACATAAGACATGTAGTTCACAGATGCCGGG
TGTGTGCGATGTTCTTTGTCGTTCCTCCCACGGCGAAAAGAACGTGTAAG
GTACAGCAGTACCTGCATTTTTAATGTTCTTGCCTTTTGAGTAAATTGGA
CAAACAAGTGCCCCGGCGGACAGCACTGCAAGATGAGATAAATCCAACTG
CGCTCACGTCCCCTACCCGCCACACCCGAACACCCAACCCAACCCACGCC
TCCAGCGCACACCTGTAAAGCTGAATCTCCGACCGAGCCCCGCCTTTTGC
TTTCGTTTGCGCCGCACCGACGGCAGGTTGCATGCGTGTGCCAGGATTGG
AGGCAGCTCGCCCAGGACGTTCCGACCCTCGCTCCGGGGGTGGTGGACTA
AGTGGTGGACTAAGTGGTGTTTTTTTGTTTTACGACTTGTCTCTCCGCCT
ACTTAAAGGCCTACCTTCCGCGTTGTTTCGTGTCGGGGGTTGAGTACCTA
TGTATTATATGTTCTATATATATAAAGAAAGTATGCCTGAGAGCAATTTG
TTGCTGTCCTTCATGTAAATACCGACAAGGGAAAAAAAAGCGGAGATTGA
TGGCGCAGCTTTTGTGCGTAAGCTCTCCCAGCGCCAGCAGGAGGCTGGGG
GTGGGGCTTTCTCTTCTCGTCAGGGCACTTTTGTTTTTTGTTCTTTCGAG
GTAAATTTATACTTGTACGAAGTATCGAAGTACAACCTACACGTGATGTG
ATTACTGATTACTGATTGGGGCTGGGCGCAATCTGCATTCGTTGAGGTAC
AAGTGGTTCCCTGGGGCAGGCCGTGGCCTAGTGTAGTTCTCGAGCCGTTG
CGGATCGGACGGGGTGGCGGGTCGTGCGATACGTGTGGGAGGCGCTGGAG
TCTCGTGACGAGGTCGCTCTACACAGCAGCAAGTATGTTATTTTCGCCAC
CTGTTGTGGCTTGACAAACGATGAAAGGCGGGAAGATGACGAGGACATGC
GCGATCCATGTGTACGCATTTTCGGGGAATGTAAAACTCGAAAAAGGAAG
TATCTAGTGCTCCTTTGCGTACCATTGCATAGCAGCAGTTTCGTTGGCAA
GAGCAACGCTGTTCTTCGGCAGAGGAGAGTCGCACGGGGTCAGATGCGCA
TGGCGCAGACTCGTCGCTTTGGTTGTGTGGAGTAAAAAGTGCTCGATACA
AAAACGGCAGAATGTCAGAATGGAGGAAACTGCTTGGTTGTGCAGTCTGA
CGTCCGAAGAGGCAGGCAATGTCAACAATTTGTCAGCGCTTTGTTCTAGG
GCACTCGGAGAAGGCACTTAGGTCGAATGCCACGTCTTGGTTGTGTTTAT
TTTTTCGTTGAGGGGGCACCGCCGTTTTCAGAAAGCGGTTTGCTTTGGCC
TGTGAAGCACACCAGGAAAGTGTGTCGTAGGCTCGGGCCTCGAGACGCAG
AGATGCACATGGTCGGCGTGGTGTAAACGAGGAGAGAGGAGGGGAAAGGT
AGCGGCATAGCCCCTGACCCTCTTGCTTGAAGTCAGTCAACGAGTGCATC
GTCATTGGTGAGGCAATGGACGATACGTCGGATCAACCTAGGGTTTCGCG
GGGTGTATACATACATGCAAACGTCATGAATCAGCGTGGTTTTTGTCCTG
GTTTGTAGGGTTAAGAGTCTCGGTGTAGATCATGCTACAGCAGTGGCGTA
CGACATCTCACCTCATACATCCAAGCGTTGTTCGTTGTGCAAAGCGCTAC
TGGTATGCACAAGTAATTGGAGACACGGCGCTGTGTATTCTTCCTGGAAT
TCGAGTGTCATCAGTTTGATGGTGGGACCGGTTTAGCCTGTTCTGCAGTA
CGCTTTCGCGTCTTCGTCGAATGGGAAGAGGAGGGAGGGATGGGCCCGTG
ACGTCATCC
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Coding sequence (CDS) from alignment at C-linearis_contig90:120184..124842-

>mRNA_C-linearis_contig90.16759.1 ID=mRNA_C-linearis_contig90.16759.1|Name=mRNA_C-linearis_contig90.16759.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at C-linearis_contig90:120184..124842- (Chordaria linearis ClinC8C monoicous)
ATGGCCAGGCAGCAGCTATCGGATCTACCCAAGGAGGTGATGTGGAGGGT
GATCCAGTTCGTGGACGAGTCGCATCGCGTGCAGTGCAAGATGATCTCGC
GCCGTTGGCAGCACTACGGGTTGAACCGAGGCAGAGGCAACGCCACCGCG
CTGAGAAAAGCAAAGGGAACCCTACCGAACGAGCTGCTTGTCGGCCTGGT
GCTTCAGTTCTTAGACGAGCCAGACGACGGATGGCCAGGCAGCAGCTATC
GGATCTACCCAAGGAGGTGATGTGGAGGGTGATCCAGTTCGTGGACGAGT
CGCATCGCGTGCAGTGCAAGATGATCTCGCGCCGTTGGCAGCACTACGGG
TTGAACCGAGGCAGAGGCAACGCCACCGCGCTGAGAAAAGCAAAGGGAAC
CCTACCGAACGAGCTGCTTGTCGGCCTGGTGCTTCAGTTCTTAGACGAGC
CAGACGACGGCGATCGGCTGCGACACATCGCCAAGGTGTGGGCGGCCTAC
CTCCAGCGGGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGATGGCCGCGGC
GGGCGGCGGCGAAGAGGGCGCCGACTCGCTCCCTCCCTTGCTGCCCGGCA
TGCCCATGGGCTTCGGGCCGGCGACGGAGCCCGGGCCGCTGGACACCACG
GGCCGGCTCCCGAACGAGCTGCTCGAGTCCATGTTCGACTACCTCGACGA
GGATATGACCATGAACTGCGCCTCCGTAGCTCGCAGCGATCGGCTGCGAC
ACATCGCCAAGGTGTGGGCGGCCTACCTCCAGCGGGCGGCGGCCGCGGCG
GCGGCGGCGGCGGCGATGGCCGCGGCGGGCGGCGGCGAAGAGGGCGCCGA
CTCGCTCCCTCCCTTGCTGCCCGGCATGCCCATGGGCTTCGGGCCGGCGA
CGGAGCCCGGGCCGCTGGACACCACGGGCCGGCTCCCGAACGAGCTGCTC
GAGTCCATGTTCGACTACCTCGACGAGGATATGACCATGAACTGCGCCTC
CGTAGCTCGCAGGTGGAGGTCGTCGGCGATGGAGCTTATCTTGACGTCGT
TCCTGAGCCCCATCCTGTGGGCCATACCCCAGGGAGCGGTGCAGAACATG
ATGATCAACCTGCACCCGACCGACTTGACACAGGTGGAGGTCGTCGGCGA
TGGAGCTTATCTTGACGTCGTTCCTGAGCCCCATCCTGTGGGCCATACCC
CAGGGAGCGGTGCAGAACATGATGATCAACCTGCACCCGACCGACTTGAC
ACAGGTTGCATGCGTGTGCCAGGATTGGAGGCAGCTCGCCCAGGACGTTC
CGACCCTCGCTCCGGGGGTGGTGGACTAAGTTGCATGCGTGTGCCAGGAT
TGGAGGCAGCTCGCCCAGGACGTTCCGACCCTCGCTCCGGGGGTGGTGGA
CTAA
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