mRNA_C-linearis_contig9.16751.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16751.1
Unique NamemRNA_C-linearis_contig9.16751.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16751.1 vs. uniprot
Match: D7FYG2_ECTSI (GBP4, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG2_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.920e-20
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   22 QVTIFNWLGRPNKTAMLEQLKLMVLATDNIQQHDGGKG----KVFGHLIILARDLSGPDKPE 195
            +V IFNWLGRPNKT MLE+L++MVLATD I+Q DG  G    KVFGHLIILARDLSGP+K E
Sbjct:  145 KVIIFNWLGRPNKTTMLEKLEVMVLATDKIKQQDGDGGCFHEKVFGHLIILARDLSGPEKAE 206
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BLAST of mRNA_C-linearis_contig9.16751.1 vs. uniprot
Match: D8LML7_ECTSI (GBP2, guanylate-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML7_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.520e-7
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   22 QVTIFNWLGRPNKTAMLEQLKLMVLATDNIQQHDGGKGKVFGHLIILARDL 174
            +V IFNWLG PNK+ +LE+L +M+ A + + +       +FGHLI++ RD+
Sbjct:  134 KVVIFNWLGLPNKSTILERLVVMIKAAEKVSRRKNKGEPMFGHLILVMRDV 184
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BLAST of mRNA_C-linearis_contig9.16751.1 vs. uniprot
Match: A0A6H5JJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.570e-6
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   19 LQVTIFNWLGRPNKTAMLEQLKLMVLATDNIQQHDGGKGKVFGHLIILARDL 174
            + V +FNWLG PNK+ +L++L +M+ A + + +       +FGHLI++ RD+
Sbjct:    1 MYVVLFNWLGLPNKSTILQRLLVMIKAAEKVSRRKTKDEPIFGHLILVMRDV 52
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BLAST of mRNA_C-linearis_contig9.16751.1 vs. uniprot
Match: A0A836CFB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFB5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.630e-5
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   22 QVTIFNWLGRPNKTAMLEQLKLMVLATDNIQQHDGGKGKVFGHLIILARDLSGP 183
            +V IFNWLG PNKT ML  L L+  +   + + D  +  VFG LI++ RD   P
Sbjct:   24 RVVIFNWLGMPNKTTMLNHLALLQASAAVVNRSD--RDGVFGDLIVVLRDCIAP 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYG2_ECTSI5.920e-2072.58GBP4, guanylate-binding proteins n=1 Tax=Ectocarpu... [more]
D8LML7_ECTSI4.520e-743.14GBP2, guanylate-binding protein n=1 Tax=Ectocarpus... [more]
A0A6H5JJR4_9PHAE1.570e-638.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFB5_9STRA3.630e-544.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3886764..3886958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog2880.D7FYG2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Guanylate-binding protein, N-terminal domain
EggNOG OGs28VNJ@1,2R2E7@2759
Ec32 ortholog descriptionGBP4, guanylate-binding proteins
Ec32 orthologEc-19_001130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.973963-CDS-C-linearis_contig9:3886763..38869581622930768.973963-CDS-C-linearis_contig9:3886763..3886958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3886764..3886958 +
1690881240.2438743-CDS-C-linearis_contig9:3886763..38869581690881240.2438743-CDS-C-linearis_contig9:3886763..3886958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3886764..3886958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16751.1prot_C-linearis_contig9.16751.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3886764..3886958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16751.1

>prot_C-linearis_contig9.16751.1 ID=prot_C-linearis_contig9.16751.1|Name=mRNA_C-linearis_contig9.16751.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=65bp
MADGPNLQVTIFNWLGRPNKTAMLEQLKLMVLATDNIQQHDGGKGKVFGH
LIILARDLSGPDKPE
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mRNA from alignment at C-linearis_contig9:3886764..3886958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16751.1 ID=mRNA_C-linearis_contig9.16751.1|Name=mRNA_C-linearis_contig9.16751.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at C-linearis_contig9:3886764..3886958+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGATGGCCCAAACCTCCAGGTGACCATCTTCAACTGGCTGGGCAG
ACCCAACAAAACCGCCATGCTTGAACAGCTCAAACTCATGGTTCTGGCTA
CCGACAACATTCAGCAACACGACGGCGGCAAGGGCAAAGTTTTCGGCCAT
CTCATCATCCTCGCGCGAGACCTGAGCGGCCCTGATAAACCGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3886764..3886958+

>mRNA_C-linearis_contig9.16751.1 ID=mRNA_C-linearis_contig9.16751.1|Name=mRNA_C-linearis_contig9.16751.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at C-linearis_contig9:3886764..3886958+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGATGGCCCAAACCTCCAGGTGACCATCTTCAACTGGCTGGGCAG
ACCCAACAAAACCGCCATGCTTGAACAGCTCAAACTCATGGTTCTGGCTA
CCGACAACATTCAGCAACACGACGGCGGCAAGGGCAAAGTTTTCGGCCAT
CTCATCATCCTCGCGCGAGACCTGAGCGGCCCTGATAAACCGGAGATGGC
GGATGGCCCAAACCTCCAGGTGACCATCTTCAACTGGCTGGGCAGACCCA
ACAAAACCGCCATGCTTGAACAGCTCAAACTCATGGTTCTGGCTACCGAC
AACATTCAGCAACACGACGGCGGCAAGGGCAAAGTTTTCGGCCATCTCAT
CATCCTCGCGCGAGACCTGAGCGGCCCTGATAAACCGGAG
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