mRNA_C-linearis_contig9.16737.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16737.1
Unique NamemRNA_C-linearis_contig9.16737.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 3.470e-111
Identity = 177/312 (56.73%), Postives = 223/312 (71.47%), Query Frame = 3 
Query:  399 NMPKRATIVGLAVLLVACAGVFLVQPEILRQLSRSNHHQQLRYSDGEG---TPAPSAAXXXXXXXXXXXXXXXXXFGFDYPLLVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMADPAQAARVSQFVAPTDYVAERLEKKMLDNVR 1325
             M ++A I    VLL++C G+F V P + R      HH      D  G   TPAP+                   F F+YP +VEKK VSS++R++FLVGLEGTGHHY  +V ++ C TA+VPC   C +AKALYP ++TP + +DYERARR+LRR LE LA +  E + EG+A +A F  CR ++GMMS+PNFNG +K LQYVDFRLLAEEAERAGVDVRFV+L RSARSILVSDT+HN+YGG+FM+ESR L+NNAAVVES F+ELGPGF TCFRYE M+DP Q  RV++F+AP +  A+RLE KML+NV+
Sbjct:    2 RMMRKAVIALGVVLLMSCLGIFRVWPGLRR------HHV-----DSTGPVPTPAPTIPP----------------FSFEYPAVVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLENVK 286
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 5.820e-110
Identity = 199/326 (61.04%), Postives = 246/326 (75.46%), Query Frame = 3 
Query:  402 MPKRATIVGLAV-LLVACAGVFLVQPEILRQLSRSNHHQQLRYSDGEG---------TPAPSAAXXXXXXXXXXXXXXXXXFGFDYPLLVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEA-GMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMADPAQAARVSQFVAPTDYVAERLEKKMLDNVR--SRPEA 1340
            +P+R T    ++ LL+A  G+FL QPE+L+QL+ S+   QLR S   G         T A +  XXXXXXXXXXXXXXXXX  F YP++VEKKAVSS+MR+VFLVGLEGTGHHY+ADVLE++CK   V CPK+C +AK LYP +S PKS   Y  AR+ LR  +E LA F EE + EG++T+ SFGACRF+  GMMSYPNFNG EK LQYVDFRL+AEEAERAGVD+RFV+L RSA  IL SD+ H+NYGGSF++ESR LLNN AVV S F+EL P FTTCFRY +MADPAQAARV+ F+AP ++ AE+L  ++L +V+  S PE+
Sbjct:   10 LPRRRTFAVFSLTLLLAVTGLFLAQPELLQQLTASHSRPQLRQSFEGGEDPLPGDSETAAATXXXXXXXXXXXXXXXXXXXXSFRYPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGSFIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILSHVKIKSPPES 335
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 7.450e-81
Identity = 133/212 (62.74%), Postives = 164/212 (77.36%), Query Frame = 3 
Query:  714 LADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEA-GMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMADPAQAARVSQFVAPTDYVAERLEKKMLDNVR--SRPEA 1340
            +ADVLE++CK   V CPK+C +AK LYP +S P+S   Y  AR+ LR  +E LA F EE + EG++T+ SFGACRF+  GMMSYPNFNG EK LQYVDFRL+AEEAERAGVD+RFV+L RSA  IL SD+ H+NYGGSF++ESR LLNN AVV S F+EL P FTTCFRY +MADPAQAARV+ F+AP +  AE+L  +ML +V+  S PE+
Sbjct:    1 MADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGSFIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVKIKSPPES 212
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.550e-24
Identity = 73/253 (28.85%), Postives = 128/253 (50.59%), Query Frame = 3 
Query:  636 LVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNY----GGS---------FMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMADPAQAARVSQFVAPTDYVAERLEKKMLDNVRSRPEAQHEDP 1355
            ++ K  VS   R+VF+ GLEGTGHHY+     ++    ++  P+     K +Y   +  K  ++ ++        +E +   A     E  A ++S GA  F +   SYP  +G  K +QY+D  ++AE AE AG+D R ++L RSA+ +++++T H  +    G           F+K  R L  + AV+ S   E+GP F  C  ++ + D  QA+ ++ F++P D +A  +E  +   V++  ++   DP
Sbjct:  138 ILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGD-NMNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRRLA-----EWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFHLLMGDDEETVGQERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPNDEIASLVESSL---VQTAKKSSRTDP 381
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 2.330e-16
Identity = 72/218 (33.03%), Postives = 107/218 (49.08%), Query Frame = 3 
Query:  636 LVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKT----ASVPCPK---VCRVAKALYP---GVSTPKSAEDYERARRDLR-----RGLETLATFAEEEVPEGKAT---MASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMAD 1235
            L+ K+   ++ R++F+ GLEG+GHH    +L+   K     A V   +     R  K L+     +  P++A+ +E A    +     R  E     A   +    AT   +AS G C    GMMSYPNF G+ K  Q  D RLLAE AE  GVD R + L R A ++L S T H ++G S+  E+  L +NA  + +  + L P F  C  Y+ + +
Sbjct:   98 LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARRCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGC----GMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHFG-SWNTEAVVLEHNAQTLLAQLQSLDPAFVLCTEYDRLPE 310
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.870e-16
Identity = 74/220 (33.64%), Postives = 104/220 (47.27%), Query Frame = 3 
Query:  618 GFDYPLLVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPCPKVCRVAKAL-YP--GVSTP-KSAEDY--ERARRDLRRGLETLATFAEEEVPEGKATMASF---------GACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHN--NYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYED 1226
            GF  P  + KK V SK+R+VF VGLEGTGHH    ++  + K   +     C++   + +P  G   P  + + +    A    + G E +A  A  ++    AT             G C     + SYP F G EK LQ+ D   LAE AE  G+D R V L R A  +++SD  H   N G   M E R L NNAA + +    + P F +C +Y+D
Sbjct:  405 GFGMPHRL-KKTVFSKLRLVFFVGLEGTGHHLWQGIVMKLLKNKQLNAE--CKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYE-MAADAMMKLKASNATGTHMLNLVYRGWKGNC---GSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHFNIGHPKMYEERVLENNAASIYTTIATMDPKFYSCTQYDD 617
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A7S3PJR3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJR3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-14
Identity = 62/212 (29.25%), Postives = 101/212 (47.64%), Query Frame = 3 
Query:  627 YPLLVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPC-PKV-------CRVAKALYPGVSTPKSAEDY-ERARRDLRRGL--ETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLN--NAAVVESLFRELGPGFTTCFRYE 1223
            YP ++ K+A S ++R VF++GLEGTGHH    +  +    ++  C P++        ++   ++   +  +  E Y ER    L   L  +  A  +++ V     T+       +  G MSYPNF    ++    D RL+AE  E  G+D R + + R A  +L+S T H ++G  F     T  +  N+A+V+S    L P F  C  YE
Sbjct:    6 YPDILPKRAFSDQLRFVFVMGLEGTGHHMWLPIWTDCQNKSNCDCAPQIEDFTFGADQMRSGMFGAFTGKREVEQYVERVISQLPSKLAEDQKARGSDQSVTYLLNTLCVKHKHYWSVGAMSYPNFMNGCRSWSNPDVRLMAEVFESLGIDFRVMVVVRDALDVLLSTTVHRHFG-RFEPTGHTYASIVNSAMVDSQLARLDPTFFKCLEYE 216
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A7S3LMY4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMY4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-13
Identity = 64/232 (27.59%), Postives = 98/232 (42.24%), Query Frame = 3 
Query:  624 DYPLLVEKKAVSSKMRIVFLVGLEGTGHHYLADVLENICKTASVPC------------------------PKVCRVAKALYPGVSTP---KSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGG-SFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMAD 1235
            +YP +++K+A S K R VF++G+EGTGHH    VL   C T + P                          K  +     +  + T    KS E+Y +      +  +T   F      EG+    +          +SYPNF G+ +  Q  D R+LAE  E  GVD R V L R A  +L+S+  H  +   S +      + N  +++S    L P F  C  Y+++ D
Sbjct:  141 EYPDVLKKQAYSDKTRFVFILGIEGTGHHMFHSVLRE-CPTCTCPVGINGNADHGGFAVSSYKHDYGVFGSKEGKDGVKKHVNMFTDGLLKSLEEYYKDDEGRFKATDTTTFFINSYKDEGETGRCTLWQDWSSYSEISYPNFGGRCRRWQIPDVRILAEMFESQGVDFRVVVLVRDALDLLISNAVHRKWERWSVIAPQYISILNDNILKSQLLRLDPNFFRCIDYDNLPD 371
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.890e-9
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  912 TMASFGACRFEAGMMSYPNFNGQEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNY 1115
            T+ + G  +   G +SYP  NG +K  QYVD RLLAE AE  GVD+R +++ RSA+ +L++DT H  +
Sbjct:   54 TLPTPGTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121
[Close]
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Match: A0A7S1RT13_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RT13_ALECA)

HSP 1 Score: 58.2 bits (139), Expect = 7.920e-6
Identity = 60/197 (30.46%), Postives = 79/197 (40.10%), Query Frame = 3 
Query:  669 RIVFLVGLEGTGHHYLADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDLRRGLETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNG--QEKTLQYVDFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLLNNAAVVESLFRELGPGFTTCFRYEDMADPAQAAR 1253
            R+VF+ GLEG+GHH+L  VL                  +A  PG  T +    +ER     R   E +  F E             GA  F    +SYP   G  + K LQ      LAE AE AGV ++ +FL R    +L S  E   +    +  + TL NN   + S  R L     TC R  DM     A +
Sbjct:   14 RLVFIAGLEGSGHHFLQGVLRGT------------GYGRAALPG--TWECGFQWER-----RVYGEAVKMFKE------------LGAGTFVLPHVSYPCGGGSHEHKMLQRPRIDWLAEAAEEAGVLLQVLFLLRPMDEVLTSGCEKREFEDCDL-HAETLSNNTEALVSQMRALRLDQITCLRLGDMKSMKAAVK 178
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FMV3_ECTSI3.470e-11156.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMV4_ECTSI5.820e-11061.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA1_9PHAE7.450e-8162.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH94_9PHAE1.550e-2428.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0A0K6_9DINO2.330e-1633.03Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S3PR25_9STRA6.870e-1633.64Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3PJR3_9STRA2.450e-1429.25Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3LMY4_9STRA1.020e-1327.59Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D7G1E6_ECTSI3.890e-945.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1RT13_ALECA7.920e-630.46Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3630610..3637465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog44056.XP_009035729.1
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons6
Model size1622
Cds size1221
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930764.616008-CDS-C-linearis_contig9:3630609..36311081622930764.616008-CDS-C-linearis_contig9:3630609..3631108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3630610..3631108 -
1690881237.728984-CDS-C-linearis_contig9:3630609..36311081690881237.728984-CDS-C-linearis_contig9:3630609..3631108Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3630610..3631108 -
1622930764.630684-CDS-C-linearis_contig9:3631589..36317681622930764.630684-CDS-C-linearis_contig9:3631589..3631768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3631590..3631768 -
1690881237.7468157-CDS-C-linearis_contig9:3631589..36317681690881237.7468157-CDS-C-linearis_contig9:3631589..3631768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3631590..3631768 -
1622930764.6475308-CDS-C-linearis_contig9:3632229..36323101622930764.6475308-CDS-C-linearis_contig9:3632229..3632310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3632230..3632310 -
1690881237.7568076-CDS-C-linearis_contig9:3632229..36323101690881237.7568076-CDS-C-linearis_contig9:3632229..3632310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3632230..3632310 -
1622930764.6646013-CDS-C-linearis_contig9:3632541..36327081622930764.6646013-CDS-C-linearis_contig9:3632541..3632708Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3632542..3632708 -
1690881237.7659533-CDS-C-linearis_contig9:3632541..36327081690881237.7659533-CDS-C-linearis_contig9:3632541..3632708Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3632542..3632708 -
1622930764.680188-CDS-C-linearis_contig9:3633278..36334341622930764.680188-CDS-C-linearis_contig9:3633278..3633434Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3633279..3633434 -
1690881237.775004-CDS-C-linearis_contig9:3633278..36334341690881237.775004-CDS-C-linearis_contig9:3633278..3633434Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3633279..3633434 -
1622930764.6945891-CDS-C-linearis_contig9:3636925..36370641622930764.6945891-CDS-C-linearis_contig9:3636925..3637064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3636926..3637064 -
1690881237.7846947-CDS-C-linearis_contig9:3636925..36370641690881237.7846947-CDS-C-linearis_contig9:3636925..3637064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3636926..3637064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930764.7174757-UTR-C-linearis_contig9:3637064..36374651622930764.7174757-UTR-C-linearis_contig9:3637064..3637465Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3637065..3637465 -
1690881237.7959638-UTR-C-linearis_contig9:3637064..36374651690881237.7959638-UTR-C-linearis_contig9:3637064..3637465Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3637065..3637465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16737.1prot_C-linearis_contig9.16737.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3630610..3637064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16737.1

>prot_C-linearis_contig9.16737.1 ID=prot_C-linearis_contig9.16737.1|Name=mRNA_C-linearis_contig9.16737.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=407bp
MPKRATIVGLAVLLVACAGVFLVQPEILRQLSRSNHHQQLRYSDGEGTPA
PSAAPTPDPTPSPTPPPTDPPFGFDYPLLVEKKAVSSKMRIVFLVGLEGT
GHHYLADVLENICKTASVPCPKVCRVAKALYPGVSTPKSAEDYERARRDL
RRGLETLATFAEEEVPEGKATMASFGACRFEAGMMSYPNFNGQEKTLQYV
DFRLLAEEAERAGVDVRFVFLTRSARSILVSDTEHNNYGGSFMKESRTLL
NNAAVVESLFRELGPGFTTCFRYEDMADPAQAARVSQFVAPTDYVAERLE
KKMLDNVRSRPEAQHEDPKKVFFCVAVYLVWSFSAYLVCRLVLPVAAVLA
LLLSRFRESVGVAVFSFAVCRCWEDSHRIPGPKNRFRDDLVVRTGPQPAP
PVGSASH
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mRNA from alignment at C-linearis_contig9:3630610..3637465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16737.1 ID=mRNA_C-linearis_contig9.16737.1|Name=mRNA_C-linearis_contig9.16737.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6856bp|location=Sequence derived from alignment at C-linearis_contig9:3630610..3637465- (Chordaria linearis ClinC8C monoicous)
GCCAAGTAGCGTTGGCACCCAACGAGAGAAATAGCCAACCGCCTCCTTGT
CATCTCCCTTCCTGCTGTGGTCCGAGCACATATAGGTGCGACTCCTGCTG
ATGGGCGAAATCGCGCAAGGACCTCTCGCCTCTTTTCGCTGACCGCCTGC
CGCTGGAGCACCTGTTTCTTGGGTACGGGAATAAGAACAGCCAGCCGAGG
TGCGTCTGGCACGCCTCTCGTATCGACGGATTCGAACTCGCCCTCTCTTC
AGAACACACGAGGGGAGGGAGAGCGGCAACGCCCACAACCTTGTTATCGT
CCGTACTGCTGTCAGTGAAAAACACGACCGCGTGGTCTGTGCTTGCGTGG
TGTATCCAATACACATCAGCAGCGCATCAAAACTCTGGCATCATCTAAAA
CATGCCGAAGAGAGCGACGATCGTCGGCCTCGCGGTCCTTCTGGTGGCGT
GCGCTGGTGTTTTCCTGGTGCAGCCGGAGATCCTGAGGCAGCTTTCGCGG
TCCAACCATCATCAGCAGCTCAGATATTCCGACGGAGAAGGTGGGTGGAT
GCCCTGAAGAGAGGTTTGAGAGCAGTCTGCGGCGATCAAGCAGCGGTGAT
GAAACAACTCGCACGACATCCCCGGTAACATCAGTTTCTCCGAAGTGCAA
GTTATTCCGTGTTTTAATTAAGGCACTTTACCAACGCGATTGGCTGCATT
ACGCCGGACTACAGCAGCACGAGCACGCTACAAGGGTGTGCTATTGTGCA
ACAGTAGCGGTACTGCTGTACATGAGCGTGCTAGTTTTTTTTTTTTTTTT
CCATCGTCACATATGGTCGGTCGGGGACTCTATAGTCTAATTTTCCACAT
TTTCAACCTGCAAAAGCCGGTCGCCCCAGTGGACTAATGGTTTAACTTCG
AACCCAGGGCTCCAGACTATTTGTTTCCTGATTCTTTTATTTTTCTCGTA
TTTTATTGCTCTGCTGGCCCTTGGGGTCCGTTTATTTTTCAGTATACCTT
TTTAGGTAAGTTAGCTTGTGACCACAGAAATTGGCCGCGTCAAGTGATGG
ATTAGTACGGAGAGGTTGAGACAGAAGGAGGTACTGGATAGAGACGGGAC
CGGGATGGTTTTTAATGTGAAGACAACAACAACAACAACACTAGCAGCAA
AGTCTGGAGTTCAATTCCAAGCAAAGGTGATTATTTTGCGACTTTGCAGG
TGAAAGCGATAACATAGCTGAAAAAGCTCGTGAGAACCAAACCTCGACTT
AGCACGCTGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAAAT
CCAAGGCAAGCACCGCAGGAGGAAAGTGGGGCAAAAAAGAAACAGAAAAA
GAAGAAAAAAGCCCCGTGTTTACCCCCTCCTATGTGACCCCGGTTGGTTC
TAGTTGTACAGAAAAATACACTGAATATGTGTAGTACTCTAAATACACCG
CAATGTCTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCTAAA
TAAATGGGACGAAAACACACTTACTACACTTCTCGGCGTAGGGTTGGTTG
TTCCGAATTTCAAAAACACTGTAAAACGCCCTGACTCCAGGCGCAGAGAT
CTGTGGAAAGCGAGTTTTTTGTTCCATATATTACCGAATAACCACAATAT
TTTGTTCGCTTTTTAATGAGGGTTCTACTTTCCAGACAACAATTCTGAGA
CCGGGTTTGGACAGATAACAAAATTAAAATTCCCCGGGGGAATATTTTTC
CGATTCTGAAAATATCAAGAAATGACGATGTTATGCCCCAAAAACCGGAT
CTGGAAGGGTATGTATTTTGTTCGATTTTTGCTGTGACAACCAACCTACC
GATGCTGTGACAACCAACCTACCGATGCTGTGACAACCAACCTACCGATG
CTGTGACAACCAACCTACCGATGCTGTGACAACCAACCTACCGATGCTGT
GACAACCAACCTACCGATGCTGTGACAACCAACCTACCGATGCTGTGACA
ACCAACCTACCGATGCTGTGACAACCAACCTACCGATGCTGTGACAACCA
ACCTACCGATGCTGTGACAACCAACCTACCGATTTTAAAATAGAGCGCGG
CAAACGATCCCTCTCGAAAATCCCCGGGGCTCTATTTTTTTTTTTTTCAG
ATTTTTCAAAAAAATGGAATTTCATGAGGTATTCGCCGGTGGTTTGTTTT
GCCGCTGATGGACAAAAAGCTCAAAAGCCCGCACACCACACACCACACAC
GAAGCCCACAACCGGGGACACACAAGCCTCACACATGGCACGGCGGGGGG
GGGGGTTGTGTCCTCGTGTCCGAGCTGGTGGGGTATTCATCTGCGGTAGA
AATATTATTTATCCTCGTGCATCCAAAAATTTACTTGCTGTGTTGTGGTT
GTCGCGATTTGCGGGTAGTGTGTATGGCTTGTTCTCTCGCACTACATGAA
GTATGCTGAGTGCGGGAGGGAGTGGCTGAGGTATAGATACAGCAGCGTTG
TTGTTGTTGGCAACTAACTCCCTGGATGCGCCGCCGCCGTGTGCTTGCCG
GGTGCATGATATACGTATTATGTACATGCCAGAGAGAGTGTAAATATCGA
CATGGATGTACATTACACGCACGCTTCTCGCGCGAGGGGAATGTAATTTT
TTATTTAAGGAGCTTGCCACAGGTGGATGTTGAGAGATGTGTATTGAATG
GTGAAGTGTATTTAGTGGGCTTGAAGGGTGTTTTTCGATCATGCATTCCT
CGTGTTGCGTGTATAAATGCGAATGTACATAATAATACATGCATGTGTCT
AGATGATTCGTACTGAGATAGGGGCTTCGGCGACATTTTCGGGGGTCCGC
CATGACTAAGACGTTCCGTGACGATTTTTGGGGGTTCCGTGGATCACTTT
GACCATAAATGATGCATTTTCTCAAAACACACAAAACTCTGCAGCTATCG
ACGTAGCTCGACGAGGCGGTCACGAATATCGTTGTTTCACGTTCCAATTT
TTTGTTCTACAAAAGTTATCGCATAAAACACGAATGGACAAATTGTCCCG
GACGGACCATATAACTAGTTCACAGCATTTCTGCTGGATAGGAGCTCTAG
TCCGTGGTCACACAGAAGGGTTCCTATCCCTGTGGCCCCCCACCCTCTCC
TCCTGCGGTGCTTCGCCTATTATTTTAATGCGAGAAGAGCGCGGCAATCT
CTCCCCTCTGTGTACACACGACTAGCGCTTTCCACAAACCAGGGACGTAT
TTGAGAGAAAAACTCACGGTTTTTATTGTGAGAAAAGATCGCATACGCCG
GGATTCGAACCCGTCACCTGGAAGCTAGAAGGTGCGCGGGGATACCAGCT
AGACCTCGAAGACTGTAATGCTCTGTGAACACTACTGTAGTGTTCTGGCC
TGCTTTGAAGATAATAGTACAAGTCAAGACAAGACAAGCCAAGACAAGAC
ACGCACTTTACTCAGCAGGCACTGCTTGCTGCTGGTGCTTCGCGTACGCA
CACGCCTGAAAAGGTTGTTGTATCGAGGGTACAAACATGGTGCTCTGCGA
TGGCTGATTGAGCAGAAGTAATTGAGATACGTATTAGTTGTTGCTCTCCC
GCGACACTCACTTTCGCCGGATTTTTACGCGTGTCGTGTAGGTCTAGACC
CTCCAAGAGTTTTGTGCTGTTGTTGTTGTTGTTGTTCGCCCGGAGAGAGG
ATGGAGGGGGGTTAGTTGCCGGGAGCGCAATGGCATGCCTACCAACAAAG
TTTCTGGAATTCACAACGGTAACCGGGCATCTGTATGGCGGTATGTGCTC
CTCTTAACTCCATGTACTGACGCTTCCTCGCCTCGATTTTGTGCCTTCGC
CCCGTTCTCTTGCCACCTCTTGTGCTGCTGTAAACACGGTGGTGGTGGTG
TGCTGATTCTACCTGCTGCTAATGGTGGTGCTGGTGGGGATGATGCTGGT
GCTGGGTTCGCTGATGCTGCTGGTGCTGGTGTCGATGGCTACATGATACT
GATGGCCGCGGCGGCGCTGCTGCTGTAGCAGGCACGCCAGCCCCTTCTGC
GGCTCCCACTCCCGACCCGACCCCGTCCCCCACCCCGCCCCCGACGGATC
CGCCGTTTGGGTTCGACTACCCGCTCTTGGTGGAGAAGAAGGCCGTGAGC
TCGAAGATGAGGATCGTGTTCCTCGTGGGGTTGGAAGGTGTGTGGTGGTG
TGGTGTGTGTCACACCTCTGCCCCCTCACAAATGATGGAAATCTTGATTT
TTTCTTTCTTTTTGTCAAGCTGTGAAGTGCAACGTGCGTGTGGTAAGCAC
CAATGTGTGTTTTGGATCGTCTCTTGGTCGGCAGCATCATCAGTACGTAG
GAGGGCTTGCTCGCCTCCGCGAAGGCGAGCCATGTGTGTCCCGTCGTGAC
GCGCAGACAATTTGGAGCCCGTGTACTACTTTCTGTACCTGCGTGTTTGG
ACTGTCAAACTTTGTCAGCAGCCCCCCCCCCCCGTGACATTTACTATGTA
GGCTCGAGCCAGAACTTTGTGGCATCTGCATCTGGAGGGCGTTGCTGGCT
CACGGAATAGAAACGCCAACAGCAGTACAGCGTCGAATACACTTGCTAGA
TGAAGTGGCTTGCGTGATCCCGGAAGACCACCTGGTTGCTCGCATCCAGA
AACAAACGCAGCAGCTATATATATACCATTCGCGGAACACCACTAAGGAA
ACCAGCCAGCCAGCAGTAACACCCGAAATGAACGCAATGGCATGCCCGTT
CTTTCAGGAACGGGGCACCACTACCTCGCCGACGTGCTCGAGAATATCTG
CAAGACGGCGTCGGTTCCTTGCCCCAAAGTGTGCCGGGTCGCCAAGGCCC
TCTACCCGGGCGTCTCAACCCCCAAGTCGGCGGAGGACTACGAGCGCGCG
CGGCGAGATCTCCGGCGAGGGTTGGTAAGGGCCCGATTTTTTCGTCAGCT
GTTTGTGCGTGTGTCACTCGTCCCGCCTACCGTCCTTTTGCATGGGTATG
CAGCTATGTATCCTTCCGGGGCCCGGACCGGTGCTTGCGACCCCCCCTCT
TTCCGGCTTAAGGTGGACGTGGGCCCATGATATGCGAGCGGTGGGATGTA
TGGGATGATGGACCGTTCCGCTGAGAAACGAAAACCTTCCTTCTTTCGCT
TGCAGGAAACCCTTGCCACTTTCGCGGAGGAAGAAGTGCCAGAGGGAAAG
GCCACGATGGCCAGCTTCGGAGCCTGCCGCTTCGAGGTATGTAGCATACG
GTTTGTGTTGCGTGACATGCCATGCGTCGGTGTATCGGCGATGCCGGTGG
GGGGGTGTTTTGTTGTGTTTGGGGTAGTGGGTTTTGGGGGGTGCGTTATA
GGCACGATTTCTGCGTTGTTGTTGTTGCCGGCGTTTTTTTTGGGGGGGGG
GAGCGGTTCCGGTGGTTGCGCTGGCTACGATGCGTTGCTTGTGTGTGGCG
GTGGTGGTGCTGTTGTTTTTGGCGTTTTTTTATCGAGTTGGTAGGTACTT
GCGGTGTTTGGCGTTCACTGGCTGCCTTTCTCAATGCCCCCCCCCCCCAA
CTCCAGTTCTTACGTTTTGAATCCTCTCTCTCACCAAATATGTCCTCCTC
TCCCCCGTTCCGTTTTTCTTGTTCGTTGCTGTCTCGCGCTATCGCGTCAC
GTTGTCGACAACCACCGACAACAACCAACCAACAAACCGTCACGCAGGCG
GGGATGATGTCGTACCCGAACTTCAACGGGCAAGAGAAGACCCTGCAGTA
CGTGGACTTCCGCCTGCTGGCCGAGGAGGCTGAGAGGGCCGGCGTCGACG
TTCGCTTTGTCTTCCTCACCCGCTCGGCCAGGAGCATCCTCGTCTCGGAC
ACGGAGCACAACAACTACGGCGGCTCGTGAGTTTTGGTCTGGCCTGGTCG
TTGCCTCGCTTCTTTTTTGGTTGTTCTCTTTTGGGGGATTCGGGGGTTGG
TGGTTTGGTGGGTGGGTGGTGGGTGCCTTTGTTGTACTTCGAAGTATGTT
CTTTTCAGGGCGTGTTTTGTCGTTGGTGGAGTCTGGAGAGTAGGGTGATT
TTTGTTCTGCGCTGATGGTTTTCGGGCACCGACGTGCTGTTGCATGGGTA
TGTAATTTTGCGTTTATTTTTCATGCTTATTGTGGGGAATGAATGCATAC
GTTGGTGTTTTTCGCGTATTGTTTTTATTTTAGTCCCCTCTCCCTCGCTC
TCTCTCTCTCTCTCTCTCTCTCGAAAAGAGTTCGACGACTCGGCAAGATG
AAACGCTTGCTTGGCGCTTCCGCAACGTTCGCTCTCCCGCCGAAAGCACA
CCACGCGACACAAAACACACAAACGCAAAAATTAACTCGGAATTTTTTTT
CCAACAGGTTCATGAAGGAATCTAGAACCCTCCTCAACAACGCGGCCGTG
GTGGAGTCCCTCTTCCGAGAGCTAGGGCCCGGCTTCACCACGTGCTTCCG
GTACGAGGACATGGCGGACCCTGCCCAGGCCGCCCGCGTGTCCCAGTTCG
TCGCTCCGACGGACTACGTTGCCGAGCGCCTCGAGAAGAAGATGCTGGAC
AACGTCCGGTCCAGGCCGGAGGCGCAGCACGAGGACCCAAAAAAGGTTTT
TTTTTGTGTTGCTGTGTACCTTGTTTGGTCTTTTTCTGCGTACCTTGTGT
GCAGACTTGTTCTACCGGTGGCTGCCGTTCTTGCGCTTTTGCTTTCTCGT
TTCCGTGAGTCCGTTGGTGTCGCCGTTTTTTCGTTTGCCGTTTGCCGTTG
CTGGGAGGATTCGCACCGTATACCCGGCCCCAAGAATCGCTTCCGCGATG
ACTTGGTGGTGCGGACAGGGCCACAACCGGCGCCCCCGGTTGGATCGGCA
TCCCAC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3630610..3637465-

>mRNA_C-linearis_contig9.16737.1 ID=mRNA_C-linearis_contig9.16737.1|Name=mRNA_C-linearis_contig9.16737.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2442bp|location=Sequence derived from alignment at C-linearis_contig9:3630610..3637465- (Chordaria linearis ClinC8C monoicous)
ATGCCGAAGAGAGCGACGATCGTCGGCCTCGCGGTCCTTCTGGTGGCGTG
CGCTGGTGTTTTCCTGGTGCAGCCGGAGATCCTGAGGCAGCTTTCGCGGT
CCAACCATCATCAGCAGCTCAGATATTCCGACGGAGAAGATGCCGAAGAG
AGCGACGATCGTCGGCCTCGCGGTCCTTCTGGTGGCGTGCGCTGGTGTTT
TCCTGGTGCAGCCGGAGATCCTGAGGCAGCTTTCGCGGTCCAACCATCAT
CAGCAGCTCAGATATTCCGACGGAGAAGGCACGCCAGCCCCTTCTGCGGC
TCCCACTCCCGACCCGACCCCGTCCCCCACCCCGCCCCCGACGGATCCGC
CGTTTGGGTTCGACTACCCGCTCTTGGTGGAGAAGAAGGCCGTGAGCTCG
AAGATGAGGATCGTGTTCCTCGTGGGGTTGGAAGGCACGCCAGCCCCTTC
TGCGGCTCCCACTCCCGACCCGACCCCGTCCCCCACCCCGCCCCCGACGG
ATCCGCCGTTTGGGTTCGACTACCCGCTCTTGGTGGAGAAGAAGGCCGTG
AGCTCGAAGATGAGGATCGTGTTCCTCGTGGGGTTGGAAGGAACGGGGCA
CCACTACCTCGCCGACGTGCTCGAGAATATCTGCAAGACGGCGTCGGTTC
CTTGCCCCAAAGTGTGCCGGGTCGCCAAGGCCCTCTACCCGGGCGTCTCA
ACCCCCAAGTCGGCGGAGGACTACGAGCGCGCGCGGCGAGATCTCCGGCG
AGGGTTGGAACGGGGCACCACTACCTCGCCGACGTGCTCGAGAATATCTG
CAAGACGGCGTCGGTTCCTTGCCCCAAAGTGTGCCGGGTCGCCAAGGCCC
TCTACCCGGGCGTCTCAACCCCCAAGTCGGCGGAGGACTACGAGCGCGCG
CGGCGAGATCTCCGGCGAGGGTTGGAAACCCTTGCCACTTTCGCGGAGGA
AGAAGTGCCAGAGGGAAAGGCCACGATGGCCAGCTTCGGAGCCTGCCGCT
TCGAGGAAACCCTTGCCACTTTCGCGGAGGAAGAAGTGCCAGAGGGAAAG
GCCACGATGGCCAGCTTCGGAGCCTGCCGCTTCGAGGCGGGGATGATGTC
GTACCCGAACTTCAACGGGCAAGAGAAGACCCTGCAGTACGTGGACTTCC
GCCTGCTGGCCGAGGAGGCTGAGAGGGCCGGCGTCGACGTTCGCTTTGTC
TTCCTCACCCGCTCGGCCAGGAGCATCCTCGTCTCGGACACGGAGCACAA
CAACTACGGCGGCTCGCGGGGATGATGTCGTACCCGAACTTCAACGGGCA
AGAGAAGACCCTGCAGTACGTGGACTTCCGCCTGCTGGCCGAGGAGGCTG
AGAGGGCCGGCGTCGACGTTCGCTTTGTCTTCCTCACCCGCTCGGCCAGG
AGCATCCTCGTCTCGGACACGGAGCACAACAACTACGGCGGCTCGTTCAT
GAAGGAATCTAGAACCCTCCTCAACAACGCGGCCGTGGTGGAGTCCCTCT
TCCGAGAGCTAGGGCCCGGCTTCACCACGTGCTTCCGGTACGAGGACATG
GCGGACCCTGCCCAGGCCGCCCGCGTGTCCCAGTTCGTCGCTCCGACGGA
CTACGTTGCCGAGCGCCTCGAGAAGAAGATGCTGGACAACGTCCGGTCCA
GGCCGGAGGCGCAGCACGAGGACCCAAAAAAGGTTTTTTTTTGTGTTGCT
GTGTACCTTGTTTGGTCTTTTTCTGCGTACCTTGTGTGCAGACTTGTTCT
ACCGGTGGCTGCCGTTCTTGCGCTTTTGCTTTCTCGTTTCCGTGAGTCCG
TTGGTGTCGCCGTTTTTTCGTTTGCCGTTTGCCGTTGCTGGGAGGATTCG
CACCGTATACCCGGCCCCAAGAATCGCTTCCGCGATGACTTGGTGGTGCG
GACAGGGCCACAACCGGCGCCCCCGGTTGGATCGGCATCCCACGTTCATG
AAGGAATCTAGAACCCTCCTCAACAACGCGGCCGTGGTGGAGTCCCTCTT
CCGAGAGCTAGGGCCCGGCTTCACCACGTGCTTCCGGTACGAGGACATGG
CGGACCCTGCCCAGGCCGCCCGCGTGTCCCAGTTCGTCGCTCCGACGGAC
TACGTTGCCGAGCGCCTCGAGAAGAAGATGCTGGACAACGTCCGGTCCAG
GCCGGAGGCGCAGCACGAGGACCCAAAAAAGGTTTTTTTTTGTGTTGCTG
TGTACCTTGTTTGGTCTTTTTCTGCGTACCTTGTGTGCAGACTTGTTCTA
CCGGTGGCTGCCGTTCTTGCGCTTTTGCTTTCTCGTTTCCGTGAGTCCGT
TGGTGTCGCCGTTTTTTCGTTTGCCGTTTGCCGTTGCTGGGAGGATTCGC
ACCGTATACCCGGCCCCAAGAATCGCTTCCGCGATGACTTGGTGGTGCGG
ACAGGGCCACAACCGGCGCCCCCGGTTGGATCGGCATCCCAC
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