mRNA_C-linearis_contig9.16724.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16724.1
Unique NamemRNA_C-linearis_contig9.16724.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3379203..3380036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16724.1prot_C-linearis_contig9.16724.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3379205..3380036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.1321635-CDS-C-linearis_contig9:3379204..33792821622930705.1321635-CDS-C-linearis_contig9:3379204..3379282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3379205..3379282 -
1690881206.5413158-CDS-C-linearis_contig9:3379204..33792821690881206.5413158-CDS-C-linearis_contig9:3379204..3379282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3379205..3379282 -
1622930705.1491427-CDS-C-linearis_contig9:3379455..33796061622930705.1491427-CDS-C-linearis_contig9:3379455..3379606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3379456..3379606 -
1690881206.5519702-CDS-C-linearis_contig9:3379455..33796061690881206.5519702-CDS-C-linearis_contig9:3379455..3379606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3379456..3379606 -
1622930705.1637375-CDS-C-linearis_contig9:3380013..33800361622930705.1637375-CDS-C-linearis_contig9:3380013..3380036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3380014..3380036 -
1690881206.56236-CDS-C-linearis_contig9:3380013..33800361690881206.56236-CDS-C-linearis_contig9:3380013..3380036Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3380014..3380036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16724.1

>prot_C-linearis_contig9.16724.1 ID=prot_C-linearis_contig9.16724.1|Name=mRNA_C-linearis_contig9.16724.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
RFLPFSKTWEGVLQKQAKFWQYDQLLRVFSVTFTADGAGGSSASLEGPQK
IAKQEVVEDVSLSASVNEEASGLPRKALDLGSPL
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mRNA from alignment at C-linearis_contig9:3379203..3380036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16724.1 ID=mRNA_C-linearis_contig9.16724.1|Name=mRNA_C-linearis_contig9.16724.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at C-linearis_contig9:3379203..3380036- (Chordaria linearis ClinC8C monoicous)
AGGTTCTTGCCCTTCTCCAAGACGTGAGTTGCATTACGAAAGTGTTCATA
CTGGAAAGGTTTCTGAACTGCCACTTTTGACGCCGACCATGGTTTGAAGC
CTTGCATTTTTAACGCTCGTTGTCCTTGACTTGGTCCCGCACAGTTTTTG
AGGACGACTGCGGTGTTAACAACTGGGCTGTGCCGAAGAGTTTCAGCAGG
GTGGAAATGACAGGAGAAAGCGCGACCAACACTTCAACTTTTCAACAAGG
CAACCCAGTGTTTTTCTGTCGCTTCAATCAGGTCGTGATTTGGTGTCGTG
TCTCTGCTTTTCTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTAACGACATCAACTGATGCACGCCTCCCATTGTGT
GTGTGTATTTTGCCCACCTGCGATCGCCAGATGGGAAGGTGTGCTGCAGA
AGCAGGCCAAGTTCTGGCAGTATGACCAGCTGCTGCGGGTTTTCTCCGTT
ACGTTTACGGCTGATGGGGCCGGAGGCAGCTCGGCCTCCCTCGAAGGGCC
ACAGAAGATTGCCAAACAGGAGGTTGTCGAGGTATGTGTCGTAGAGCCTC
ATCGCCGCATGAGTTGAAACGACAAATGCAACAACCGGGACCGTAGTTTT
GCTCATGACGTAGGATTTCGAAATCACACCTCCTAACATCTTGAGGAAGC
AGTCTATCGACCTACCCCCCCTCCTCCTCCTCCTCGATCCTCTTCAAAAC
CCAGGACGTCTCTCTGTCGGCCAGCGTGAATGAGGAAGCGTCGGGTCTTC
CTAGAAAGGCTTTGGACTTGGGGTCGCCGTTGCC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3379203..3380036-

>mRNA_C-linearis_contig9.16724.1 ID=mRNA_C-linearis_contig9.16724.1|Name=mRNA_C-linearis_contig9.16724.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig9:3379203..3380036- (Chordaria linearis ClinC8C monoicous)
AGGTTCTTGCCCTTCTCCAAGACAGGTTCTTGCCCTTCTCCAAGACATGG
GAAGGTGTGCTGCAGAAGCAGGCCAAGTTCTGGCAGTATGACCAGCTGCT
GCGGGTTTTCTCCGTTACGTTTACGGCTGATGGGGCCGGAGGCAGCTCGG
CCTCCCTCGAAGGGCCACAGAAGATTGCCAAACAGGAGGTTGTCGAGATG
GGAAGGTGTGCTGCAGAAGCAGGCCAAGTTCTGGCAGTATGACCAGCTGC
TGCGGGTTTTCTCCGTTACGTTTACGGCTGATGGGGCCGGAGGCAGCTCG
GCCTCCCTCGAAGGGCCACAGAAGATTGCCAAACAGGAGGTTGTCGAGGA
CGTCTCTCTGTCGGCCAGCGTGAATGAGGAAGCGTCGGGTCTTCCTAGAA
AGGCTTTGGACTTGGGGTCGCCGTTGGACGTCTCTCTGTCGGCCAGCGTG
AATGAGGAAGCGTCGGGTCTTCCTAGAAAGGCTTTGGACTTGGGGTCGCC
GTTG
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