mRNA_C-linearis_contig9.16723.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16723.1
Unique NamemRNA_C-linearis_contig9.16723.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3378069..3378452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.2558553-CDS-C-linearis_contig9:3378068..33784521622930707.2558553-CDS-C-linearis_contig9:3378068..3378452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3378069..3378452 +
1690881207.36427-CDS-C-linearis_contig9:3378068..33784521690881207.36427-CDS-C-linearis_contig9:3378068..3378452Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3378069..3378452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16723.1prot_C-linearis_contig9.16723.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3378069..3378452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16723.1

>prot_C-linearis_contig9.16723.1 ID=prot_C-linearis_contig9.16723.1|Name=mRNA_C-linearis_contig9.16723.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
TISTGDLVAVAWSRVPPPHARSVWVSAPRDKLLRDLLVVAAHGRFQAASR
TDMPSTWSHAFTSKPCVMSHCASGTRPCRAATKSRGRPAAQAQLPPMPRG
EAQGKCADLRTAEETGARVSALRASYGV
back to top

mRNA from alignment at C-linearis_contig9:3378069..3378452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16723.1 ID=mRNA_C-linearis_contig9.16723.1|Name=mRNA_C-linearis_contig9.16723.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at C-linearis_contig9:3378069..3378452+ (Chordaria linearis ClinC8C monoicous)
ACCATCTCCACCGGCGATCTTGTAGCTGTCGCGTGGAGCAGGGTACCCCC
TCCTCACGCAAGGAGTGTTTGGGTTAGCGCCCCGCGCGACAAACTCCTTC
GCGATCTGCTCGTGGTTGCCGCGCACGGCCGCTTCCAGGCCGCTTCCAGG
ACTGACATGCCTTCGACCTGGTCCCACGCGTTTACGTCGAAGCCTTGCGT
GATGAGCCACTGTGCCTCTGGTACACGGCCTTGCCGTGCAGCCACAAAGA
GCCGTGGACGCCCAGCCGCCCAGGCCCAACTGCCACCCATGCCGCGCGGC
GAAGCCCAGGGAAAGTGCGCGGACTTGCGCACTGCGGAGGAGACGGGTGC
GAGAGTATCTGCCTTACGTGCATCGTACGGTGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:3378069..3378452+

>mRNA_C-linearis_contig9.16723.1 ID=mRNA_C-linearis_contig9.16723.1|Name=mRNA_C-linearis_contig9.16723.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig9:3378069..3378452+ (Chordaria linearis ClinC8C monoicous)
ACCATCTCCACCGGCGATCTTGTAGCTGTCGCGTGGAGCAGGGTACCCCC
TCCTCACGCAAGGAGTGTTTGGGTTAGCGCCCCGCGCGACAAACTCCTTC
GCGATCTGCTCGTGGTTGCCGCGCACGGCCGCTTCCAGGCCGCTTCCAGG
ACTGACATGCCTTCGACCTGGTCCCACGCGTTTACGTCGAAGCCTTGCGT
GATGAGCCACTGTGCCTCTGGTACACGGCCTTGCCGTGCAGCCACAAAGA
GCCGTGGACGCCCAGCCGCCCAGGCCCAACTGCCACCCATGCCGCGCGGC
GAAGCCCAGGGAAAGTGCGCGGACTTGCGCACTGCGGAGGAGACGGGTGC
GAGAGTATCTGCCTTACGTGCATCGTACGGTGTCACCATCTCCACCGGCG
ATCTTGTAGCTGTCGCGTGGAGCAGGGTACCCCCTCCTCACGCAAGGAGT
GTTTGGGTTAGCGCCCCGCGCGACAAACTCCTTCGCGATCTGCTCGTGGT
TGCCGCGCACGGCCGCTTCCAGGCCGCTTCCAGGACTGACATGCCTTCGA
CCTGGTCCCACGCGTTTACGTCGAAGCCTTGCGTGATGAGCCACTGTGCC
TCTGGTACACGGCCTTGCCGTGCAGCCACAAAGAGCCGTGGACGCCCAGC
CGCCCAGGCCCAACTGCCACCCATGCCGCGCGGCGAAGCCCAGGGAAAGT
GCGCGGACTTGCGCACTGCGGAGGAGACGGGTGCGAGAGTATCTGCCTTA
CGTGCATCGTACGGTGTC
back to top