mRNA_C-linearis_contig9.16722.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16722.1
Unique NamemRNA_C-linearis_contig9.16722.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3377636..3378092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16722.1prot_C-linearis_contig9.16722.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3377636..3378073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930761.8122602-CDS-C-linearis_contig9:3377635..33776571622930761.8122602-CDS-C-linearis_contig9:3377635..3377657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3377636..3377657 -
1690881236.213519-CDS-C-linearis_contig9:3377635..33776571690881236.213519-CDS-C-linearis_contig9:3377635..3377657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3377636..3377657 -
1622930761.8257554-CDS-C-linearis_contig9:3377879..33780731622930761.8257554-CDS-C-linearis_contig9:3377879..3378073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3377880..3378073 -
1690881236.2274091-CDS-C-linearis_contig9:3377879..33780731690881236.2274091-CDS-C-linearis_contig9:3377879..3378073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3377880..3378073 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930761.839478-UTR-C-linearis_contig9:3378073..33780921622930761.839478-UTR-C-linearis_contig9:3378073..3378092Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3378074..3378092 -
1690881236.2450042-UTR-C-linearis_contig9:3378073..33780921690881236.2450042-UTR-C-linearis_contig9:3378073..3378092Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3378074..3378092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16722.1

>prot_C-linearis_contig9.16722.1 ID=prot_C-linearis_contig9.16722.1|Name=mRNA_C-linearis_contig9.16722.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
MVNLLLAFGGEKDAKDSFGETPLTKACHLGRKQVCETLMVVGCDVNVRGT
GPYRCTPLDRAAQNRHVAILKS
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mRNA from alignment at C-linearis_contig9:3377636..3378092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16722.1 ID=mRNA_C-linearis_contig9.16722.1|Name=mRNA_C-linearis_contig9.16722.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at C-linearis_contig9:3377636..3378092- (Chordaria linearis ClinC8C monoicous)
TACAAGATCGCCGGTGGAGATGGTCAATCTTCTGCTGGCCTTTGGCGGGG
AGAAGGACGCCAAGGACAGCTTCGGCGAGACGCCGCTCACCAAGGCCTGC
CATCTTGGTCGCAAGCAAGTCTGCGAGACGCTGATGGTCGTCGGGTGCGA
CGTCAACGTCCGAGGCACCGGCCCCTACCGCTGCACCCCGCTCGACAGGG
CCGCTCAGAATAGGTGAGTGTCGAGAACAGAGAACTCGACCAGTCACACA
GTTGATAGGGTAGGGAGGGGGAGGGGTGCATCTCACGAGGTGGTGTCACG
CTTTCATCTGCTTCTTGCGAATTTCCACTGCGATGCTTCACGATGGGATG
TATTTAAATTAAAGTCTCACCAAACACCATTTTAAGCCTAACGATCTTCA
CGCATGACTCTTTTCTTTTTTCATCGCTCGCACAGGCATGTCGCGATCCT
CAAATCC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3377636..3378092-

>mRNA_C-linearis_contig9.16722.1 ID=mRNA_C-linearis_contig9.16722.1|Name=mRNA_C-linearis_contig9.16722.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at C-linearis_contig9:3377636..3378092- (Chordaria linearis ClinC8C monoicous)
ATGGTCAATCTTCTGCTGGCCTTTGGCGGGGAGAAGGACGCCAAGGACAG
CTTCGGCGAGACGCCGCTCACCAAGGCCTGCCATCTTGGTCGCAAGCAAG
TCTGCGAGACGCTGATGGTCGTCGGGTGCGACGTCAACGTCCGAGGCACC
GGCCCCTACCGCTGCACCCCGCTCGACAGGGCCGCTCAGAATAGATGGTC
AATCTTCTGCTGGCCTTTGGCGGGGAGAAGGACGCCAAGGACAGCTTCGG
CGAGACGCCGCTCACCAAGGCCTGCCATCTTGGTCGCAAGCAAGTCTGCG
AGACGCTGATGGTCGTCGGGTGCGACGTCAACGTCCGAGGCACCGGCCCC
TACCGCTGCACCCCGCTCGACAGGGCCGCTCAGAATAGGCATGTCGCGAT
CCTCAAATCCGCATGTCGCGATCCTCAAATCC
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