mRNA_C-linearis_contig9.16721.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16721.1
Unique NamemRNA_C-linearis_contig9.16721.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-11
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  196 MLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*D--GEPQCSQEEVDRVWLLLYFRPAAHKAWGR 483
            M  L + GA V V+ +QG TPLH+ C    EGLEAAV +LLR GAD+T L+    + AD +  +     G     Q+E+DR  LLL   PA  +AW R
Sbjct:    1 MHALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPA-DRAWRR 97          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: F0YB39_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB39_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 8.880e-7
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = -1
Query:  346 MHVAAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLG-LLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGAD 618
            +HVAA +G+V  V+AL++ G S + +N  GWT L +A+ + +    +G LL+ GA ++ +S  G + LH A      G +  V+ L+R GA+
Sbjct:    8 LHVAAETGDVPMVKALLAVGASADFENECGWTALQYASGNGHAECCIGHLLKCGARIDRKSDDGLSALHHAA---ESGAKLDVECLIRAGAN 96          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.340e-6
Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = -1
Query:  196 LISAGGSVEMKNASGWTPLLFAA-SSCNYTVMLGLLRRGAAVNVQSSQ-GTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGR 573
            L+ AG +   ++ +G + L +AA SS +  + L LLR GA VN +    G++ LH AC   R+  EA V LLLR GAD+T++D   RT  + +     D   + S E  D+V  LL   PA  + W R
Sbjct:  289 LLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTN-RDNTEALVDLLLRWGADETVVDSSGRTPMNHLTE---DRFTRHSAETKDKVRKLLVNAPA-DRTWRR 411          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K)

HSP 1 Score: 57.4 bits (137), Expect = 3.450e-6
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = -1
Query:  196 LISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQ-GTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGR 573
            L+ AG +   ++  G + L   + SC+  + L LLR GA VN      G++ LH A +  R+  EA V LLLR GAD+T++D + RT  D+  S       Q + E  +RV  LL   PA  + W R
Sbjct:  348 LLEAGANASAEDQMGESSLSSDSWSCSVDMALLLLRYGADVNASGGLFGSSALHNA-IKNRDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTS---GTRFQRTAETKERVRKLLVNAPA-DRTWRR 469          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: G0MFZ2_CAEBE (BRCT domain-containing protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MFZ2_CAEBE)

HSP 1 Score: 57.0 bits (136), Expect = 5.520e-6
Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = -1
Query:  166 SVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLL--LYFRPAAHKAWGRLAGQAPVAHY 555
            S+ M    G   LL AA   N T +L  LRRGA +NV +  G T LH A   T+ G    V LL+R GAD+T+L+   +T   MI        P    +++DR   +  LY +    K   R+  + PV+ Y
Sbjct:  869 SLFMDRQDGKNALLDAAREINSTNVLKALRRGAYINVFNRYGNTALHVA---TKRGHPEIVDLLIRHGADRTLLNALNKTPEQMIPEDYRKNHP----DKIDRFEAVERLYKKYQKKKFRQRVPLEFPVSSY 993          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: UPI00189F666A (ankyrin repeat domain-containing protein 53 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189F666A)

HSP 1 Score: 55.5 bits (132), Expect = 1.480e-5
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  346 AMHVAAYSGEVGSVRALISAGG-SVEMKNASGWTPLLFAASSCNYTVMLG----LLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGAD 621
            A+H AA  G +  ++ L+      V++   SG TPL       N T +L     LL++GAA+N+Q+  G TPLH   L  REGL A VK+L++ GAD
Sbjct:   77 AIHFAAQQGRLACLQILVEEYKFPVDLSTNSGQTPLHLVIHRDNKTTVLPCLHYLLKKGAALNIQTCNGYTPLH---LAAREGLLACVKVLVQSGAD 170          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: Q18102_CAEEL (ANK_REP_REGION domain-containing protein n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=Q18102_CAEEL)

HSP 1 Score: 55.5 bits (132), Expect = 1.830e-5
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = -1
Query:  166 GWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGRLAGQAPVAHY 531
            G   L+ AA   N T +L  +++GA ++V S  G TPLH A   ++ G    V++L++ GAD+T+L+ + +TA  +I       +P+ S E  +++  L++ +    K   RL    PV+ Y
Sbjct:  860 GNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVA---SKSGYPEIVEILIKNGADRTLLNAQNKTAEQLIPPNYKTTDPE-SIERYEKI-KLIFKKYQKKKFRRRLPDVFPVSSY 976          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: UPI001A932506 (ankyrin repeat domain-containing protein n=2 Tax=Rubrivivax gelatinosus TaxID=28068 RepID=UPI001A932506)

HSP 1 Score: 53.9 bits (128), Expect = 2.290e-5
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = -1
Query:  307 AMHVAAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAAD 621
            A+ +AA +G +  V  LI+ G +V   N  GWTPL +AAS  + TV++ L+ RGA ++ +S  G+TPL  A      G +   + LL  GAD ++ + +   AA+
Sbjct:   94 ALMMAALAGRLDWVERLIARGAAV---NREGWTPLHYAASGSDRTVIVRLVERGALLDARSPNGSTPLMMAA---SYGDQRNAQTLLGLGADVSLRNAQGLDAAE 192          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: A0A536XCS4_9PROT (Ankyrin repeat domain-containing protein (Fragment) n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XCS4_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 3.830e-5
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = -1
Query:  307 GWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAAD 531
            GWTPL +AA+  +   +  LL RGA V+  S   +TPL  A    R G EA+V +LL  GAD   ++ +K  AAD
Sbjct:    1 GWTPLHYAATGASTDAVKLLLERGAVVDADSPNRSTPLMMAA---RYGSEASVDVLLARGADPRRVNDQKLKAAD 72          
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: A0A4Q7YP19_9BACT (TonB family protein n=2 Tax=Edaphobacter modestus TaxID=388466 RepID=A0A4Q7YP19_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 5.020e-5
Identity = 41/133 (30.83%), Postives = 60/133 (45.11%), Query Frame = -1
Query:  295 AAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQAC----------------------------LGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDS 609
            AA+ G+   VRA   AG  +   +ASGWTPL++AASS   +V+  +L+ GA VN +S +G T L  +                             L  + G    +  LL+ GAD    D   RTA D +++
Sbjct:  296 AAHRGDKAGVRAAFGAGDKLTDVDASGWTPLMYAASSYGGSVVSEMLKAGAEVNARSKRGETALMASAVTGMAXXXXXXXXXXXXXXXXXXXXXXXLLVQRGEPQEITALLKAGADALKKDAAGRTALDYLNA 428          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LNI8_ECTSI1.370e-1143.88EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
F0YB39_AURAN8.880e-735.87Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
D8LP53_ECTSI1.340e-637.50EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP0_ESV1K3.450e-636.22EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
G0MFZ2_CAEBE5.520e-634.85BRCT domain-containing protein n=1 Tax=Caenorhabdi... [more]
UPI00189F666A1.480e-540.21ankyrin repeat domain-containing protein 53 n=1 Ta... [more]
Q18102_CAEEL1.830e-531.15ANK_REP_REGION domain-containing protein n=1 Tax=C... [more]
UPI001A9325062.290e-536.19ankyrin repeat domain-containing protein n=2 Tax=R... [more]
A0A536XCS4_9PROT3.830e-542.67Ankyrin repeat domain-containing protein (Fragment... [more]
A0A4Q7YP19_9BACT5.020e-530.83TonB family protein n=2 Tax=Edaphobacter modestus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3376964..3377584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.2186906-CDS-C-linearis_contig9:3376963..33775841622930707.2186906-CDS-C-linearis_contig9:3376963..3377584Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3376964..3377584 +
1690881207.3473248-CDS-C-linearis_contig9:3376963..33775841690881207.3473248-CDS-C-linearis_contig9:3376963..3377584Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3376964..3377584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16721.1prot_C-linearis_contig9.16721.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3376964..3377584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16721.1

>prot_C-linearis_contig9.16721.1 ID=prot_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
VTKPQTGAALHIFRALVPRYLAPRDLPGISWLSAAPPQWPPSGALQSPLA
LSALAVVRHRSLTSQPPPSLVCGRPEVEKQPDAVDLLLRALGFAVLELRV
YHVRGGALFLVQDGLVRPTAQEELDRRLQAFAGAEAGLVQRCRSLARLYV
DGRSAPQEAEHHGVVAGAGGEQQGCPSGGVLHLYTSPGADEGSDGAHLAA
VGCDVHR
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mRNA from alignment at C-linearis_contig9:3376964..3377584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16721.1 ID=mRNA_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at C-linearis_contig9:3376964..3377584+ (Chordaria linearis ClinC8C monoicous)
GTTACTAAACCGCAAACGGGTGCGGCGCTCCACATTTTCCGCGCTCTCGT CCCTCGGTACCTTGCGCCCCGGGATCTCCCCGGGATCTCGTGGCTCTCCG CAGCGCCCCCTCAATGGCCGCCGTCCGGAGCGCTGCAGTCGCCGCTAGCC CTCTCGGCCTTGGCTGTAGTGCGCCACCGGAGCTTGACCAGCCAGCCGCC CCCAAGCCTTGTGTGCGGCCGGCCGGAAGTAGAGAAGCAGCCAGACGCGG TCGACCTCCTCTTGAGAGCACTGGGGTTCGCCGTCTTAGAGCTTCGAGTC TATCATGTCCGCGGCGGTGCGCTTTTTCTTGTCCAGGATGGTCTTGTCCG CCCCACAGCGCAGGAGGAGCTTGACCGCCGCCTCCAAGCCTTCGCGGGTG CCGAGGCAGGCCTGGTGCAGCGGTGTCGTTCCCTGGCTAGACTGTACGTT GACGGCCGCTCCGCGCCTCAGGAGGCCGAGCATCACGGTGTAGTTGCAGG AGCTGGCGGCGAACAGCAGGGGTGTCCATCCGGAGGCGTTCTTCATCTCT ACACTTCCCCCGGCGCTGATGAGGGCTCGGACGGAGCCCACCTCGCCGCT GTAGGCTGCGACGTGCATCGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3376964..3377584+

>mRNA_C-linearis_contig9.16721.1 ID=mRNA_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig9:3376964..3377584+ (Chordaria linearis ClinC8C monoicous)
GTTACTAAACCGCAAACGGGTGCGGCGCTCCACATTTTCCGCGCTCTCGT
CCCTCGGTACCTTGCGCCCCGGGATCTCCCCGGGATCTCGTGGCTCTCCG
CAGCGCCCCCTCAATGGCCGCCGTCCGGAGCGCTGCAGTCGCCGCTAGCC
CTCTCGGCCTTGGCTGTAGTGCGCCACCGGAGCTTGACCAGCCAGCCGCC
CCCAAGCCTTGTGTGCGGCCGGCCGGAAGTAGAGAAGCAGCCAGACGCGG
TCGACCTCCTCTTGAGAGCACTGGGGTTCGCCGTCTTAGAGCTTCGAGTC
TATCATGTCCGCGGCGGTGCGCTTTTTCTTGTCCAGGATGGTCTTGTCCG
CCCCACAGCGCAGGAGGAGCTTGACCGCCGCCTCCAAGCCTTCGCGGGTG
CCGAGGCAGGCCTGGTGCAGCGGTGTCGTTCCCTGGCTAGACTGTACGTT
GACGGCCGCTCCGCGCCTCAGGAGGCCGAGCATCACGGTGTAGTTGCAGG
AGCTGGCGGCGAACAGCAGGGGTGTCCATCCGGAGGCGTTCTTCATCTCT
ACACTTCCCCCGGCGCTGATGAGGGCTCGGACGGAGCCCACCTCGCCGCT
GTAGGCTGCGACGTGCATCGCGTTACTAAACCGCAAACGGGTGCGGCGCT
CCACATTTTCCGCGCTCTCGTCCCTCGGTACCTTGCGCCCCGGGATCTCC
CCGGGATCTCGTGGCTCTCCGCAGCGCCCCCTCAATGGCCGCCGTCCGGA
GCGCTGCAGTCGCCGCTAGCCCTCTCGGCCTTGGCTGTAGTGCGCCACCG
GAGCTTGACCAGCCAGCCGCCCCCAAGCCTTGTGTGCGGCCGGCCGGAAG
TAGAGAAGCAGCCAGACGCGGTCGACCTCCTCTTGAGAGCACTGGGGTTC
GCCGTCTTAGAGCTTCGAGTCTATCATGTCCGCGGCGGTGCGCTTTTTCT
TGTCCAGGATGGTCTTGTCCGCCCCACAGCGCAGGAGGAGCTTGACCGCC
GCCTCCAAGCCTTCGCGGGTGCCGAGGCAGGCCTGGTGCAGCGGTGTCGT
TCCCTGGCTAGACTGTACGTTGACGGCCGCTCCGCGCCTCAGGAGGCCGA
GCATCACGGTGTAGTTGCAGGAGCTGGCGGCGAACAGCAGGGGTGTCCAT
CCGGAGGCGTTCTTCATCTCTACACTTCCCCCGGCGCTGATGAGGGCTCG
GACGGAGCCCACCTCGCCGCTGTAGGCTGCGACGTGCATCGC
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