mRNA_C-linearis_contig9.16721.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 1.370e-11 Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = -1
Query: 196 MLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*D--GEPQCSQEEVDRVWLLLYFRPAAHKAWGR 483
M L + GA V V+ +QG TPLH+ C EGLEAAV +LLR GAD+T L+ + AD + + G Q+E+DR LLL PA +AW R
Sbjct: 1 MHALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPA-DRAWRR 97
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: F0YB39_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB39_AURAN) HSP 1 Score: 55.5 bits (132), Expect = 8.880e-7 Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = -1
Query: 346 MHVAAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLG-LLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGAD 618
+HVAA +G+V V+AL++ G S + +N GWT L +A+ + + +G LL+ GA ++ +S G + LH A G + V+ L+R GA+
Sbjct: 8 LHVAAETGDVPMVKALLAVGASADFENECGWTALQYASGNGHAECCIGHLLKCGARIDRKSDDGLSALHHAA---ESGAKLDVECLIRAGAN 96
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 1.340e-6 Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = -1
Query: 196 LISAGGSVEMKNASGWTPLLFAA-SSCNYTVMLGLLRRGAAVNVQSSQ-GTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGR 573
L+ AG + ++ +G + L +AA SS + + L LLR GA VN + G++ LH AC R+ EA V LLLR GAD+T++D RT + + D + S E D+V LL PA + W R
Sbjct: 289 LLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTN-RDNTEALVDLLLRWGADETVVDSSGRTPMNHLTE---DRFTRHSAETKDKVRKLLVNAPA-DRTWRR 411
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K) HSP 1 Score: 57.4 bits (137), Expect = 3.450e-6 Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = -1
Query: 196 LISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQ-GTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGR 573
L+ AG + ++ G + L + SC+ + L LLR GA VN G++ LH A + R+ EA V LLLR GAD+T++D + RT D+ S Q + E +RV LL PA + W R
Sbjct: 348 LLEAGANASAEDQMGESSLSSDSWSCSVDMALLLLRYGADVNASGGLFGSSALHNA-IKNRDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTS---GTRFQRTAETKERVRKLLVNAPA-DRTWRR 469
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: G0MFZ2_CAEBE (BRCT domain-containing protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MFZ2_CAEBE) HSP 1 Score: 57.0 bits (136), Expect = 5.520e-6 Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = -1
Query: 166 SVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLL--LYFRPAAHKAWGRLAGQAPVAHY 555
S+ M G LL AA N T +L LRRGA +NV + G T LH A T+ G V LL+R GAD+T+L+ +T MI P +++DR + LY + K R+ + PV+ Y
Sbjct: 869 SLFMDRQDGKNALLDAAREINSTNVLKALRRGAYINVFNRYGNTALHVA---TKRGHPEIVDLLIRHGADRTLLNALNKTPEQMIPEDYRKNHP----DKIDRFEAVERLYKKYQKKKFRQRVPLEFPVSSY 993
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: UPI00189F666A (ankyrin repeat domain-containing protein 53 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189F666A) HSP 1 Score: 55.5 bits (132), Expect = 1.480e-5 Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -1
Query: 346 AMHVAAYSGEVGSVRALISAGG-SVEMKNASGWTPLLFAASSCNYTVMLG----LLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGAD 621
A+H AA G + ++ L+ V++ SG TPL N T +L LL++GAA+N+Q+ G TPLH L REGL A VK+L++ GAD
Sbjct: 77 AIHFAAQQGRLACLQILVEEYKFPVDLSTNSGQTPLHLVIHRDNKTTVLPCLHYLLKKGAALNIQTCNGYTPLH---LAAREGLLACVKVLVQSGAD 170
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: Q18102_CAEEL (ANK_REP_REGION domain-containing protein n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=Q18102_CAEEL) HSP 1 Score: 55.5 bits (132), Expect = 1.830e-5 Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = -1
Query: 166 GWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDSKL*DGEPQCSQEEVDRVWLLLYFRPAAHKAWGRLAGQAPVAHY 531
G L+ AA N T +L +++GA ++V S G TPLH A ++ G V++L++ GAD+T+L+ + +TA +I +P+ S E +++ L++ + K RL PV+ Y
Sbjct: 860 GNNALVDAAQDINATNVLKAVKKGAYIDVYSKYGNTPLHVA---SKSGYPEIVEILIKNGADRTLLNAQNKTAEQLIPPNYKTTDPE-SIERYEKI-KLIFKKYQKKKFRRRLPDVFPVSSY 976
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: UPI001A932506 (ankyrin repeat domain-containing protein n=2 Tax=Rubrivivax gelatinosus TaxID=28068 RepID=UPI001A932506) HSP 1 Score: 53.9 bits (128), Expect = 2.290e-5 Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = -1
Query: 307 AMHVAAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAAD 621
A+ +AA +G + V LI+ G +V N GWTPL +AAS + TV++ L+ RGA ++ +S G+TPL A G + + LL GAD ++ + + AA+
Sbjct: 94 ALMMAALAGRLDWVERLIARGAAV---NREGWTPLHYAASGSDRTVIVRLVERGALLDARSPNGSTPLMMAA---SYGDQRNAQTLLGLGADVSLRNAQGLDAAE 192
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: A0A536XCS4_9PROT (Ankyrin repeat domain-containing protein (Fragment) n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XCS4_9PROT) HSP 1 Score: 50.8 bits (120), Expect = 3.830e-5 Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = -1
Query: 307 GWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQACLGTREGLEAAVKLLLRCGADKTILDKKKRTAAD 531
GWTPL +AA+ + + LL RGA V+ S +TPL A R G EA+V +LL GAD ++ +K AAD
Sbjct: 1 GWTPLHYAATGASTDAVKLLLERGAVVDADSPNRSTPLMMAA---RYGSEASVDVLLARGADPRRVNDQKLKAAD 72
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Match: A0A4Q7YP19_9BACT (TonB family protein n=2 Tax=Edaphobacter modestus TaxID=388466 RepID=A0A4Q7YP19_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 5.020e-5 Identity = 41/133 (30.83%), Postives = 60/133 (45.11%), Query Frame = -1
Query: 295 AAYSGEVGSVRALISAGGSVEMKNASGWTPLLFAASSCNYTVMLGLLRRGAAVNVQSSQGTTPLHQAC----------------------------LGTREGLEAAVKLLLRCGADKTILDKKKRTAADMIDS 609
AA+ G+ VRA AG + +ASGWTPL++AASS +V+ +L+ GA VN +S +G T L + L + G + LL+ GAD D RTA D +++
Sbjct: 296 AAHRGDKAGVRAAFGAGDKLTDVDASGWTPLMYAASSYGGSVVSEMLKAGAEVNARSKRGETALMASAVTGMAXXXXXXXXXXXXXXXXXXXXXXXLLVQRGEPQEITALLKAGADALKKDAAGRTALDYLNA 428 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16721.1 >prot_C-linearis_contig9.16721.1 ID=prot_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp VTKPQTGAALHIFRALVPRYLAPRDLPGISWLSAAPPQWPPSGALQSPLAback to top mRNA from alignment at C-linearis_contig9:3376964..3377584+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16721.1 ID=mRNA_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at C-linearis_contig9:3376964..3377584+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:3376964..3377584+ >mRNA_C-linearis_contig9.16721.1 ID=mRNA_C-linearis_contig9.16721.1|Name=mRNA_C-linearis_contig9.16721.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig9:3376964..3377584+ (Chordaria linearis ClinC8C monoicous)back to top |