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Homology
BLAST of mRNA_C-linearis_contig9.16719.1 vs. uniprot
Match: D7FMW7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 5.800e-20 Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 2
Query: 323 MGKKCTQPGGCPKQALFGVPGSKKREYCAIHALHGMVDIHSKRCGEP 463
MGKKCT P GCPKQALFGVPGSKKRE+CA+HA+ GMVDIHSKRCGEP
Sbjct: 1 MGKKCTYPAGCPKQALFGVPGSKKREFCALHAIQGMVDIHSKRCGEP 47
BLAST of mRNA_C-linearis_contig9.16719.1 vs. uniprot
Match: A0A6H5KIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN5_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 8.840e-14 Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 2
Query: 1715 KRELQRVGPIGLEQELLYPWPSATGHQAIVGAGXXXXXXXLMLSPQIPP-----GSQEEEAVVHSLTGLRKKRRKLTTGGVGAVMGASI-GLPT---APSINPSGYM 2008
KRELQRVGPIGLEQELL+PWP TG +GAG + +P I GS+E+ VVHSLTGLRKKRR L GV +G+ + GLPT PS + +GYM
Sbjct: 382 KRELQRVGPIGLEQELLHPWPPVTGQHQAIGAGGITGGG--VGAPGIGGVADLHGSREDTEVVHSLTGLRKKRRGLN--GVAIPVGSGLAGLPTPPTTPSGSSTGYM 484
BLAST of mRNA_C-linearis_contig9.16719.1 vs. uniprot
Match: A0A6H5KGJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ9_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 4.130e-7 Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 2
Query: 323 MGKKCTQPGGCPKQALFGVPGSKKREY 403
MGKKCT P GCPKQALFG+PGSKKRE+
Sbjct: 1 MGKKCTYPAGCPKQALFGMPGSKKREH 27
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 98.2 |
| Seed ortholog evalue | 1.3e-17 |
| Seed eggNOG ortholog | 2880.D7FMW7 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 29ZCP@1,2RXW0@2759 |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-09_002770.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 2492 |
| Cds size | 1689 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930704.9363987-UTR-C-linearis_contig9:3361624..3361946 | 1622930704.9363987-UTR-C-linearis_contig9:3361624..3361946 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig9 3361625..3361946 + |
| 1690881206.503836-UTR-C-linearis_contig9:3361624..3361946 | 1690881206.503836-UTR-C-linearis_contig9:3361624..3361946 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig9 3361625..3361946 + |
| 1622930704.9932687-UTR-C-linearis_contig9:3364597..3365078 | 1622930704.9932687-UTR-C-linearis_contig9:3364597..3365078 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig9 3364598..3365078 + |
| 1690881206.5326107-UTR-C-linearis_contig9:3364597..3365078 | 1690881206.5326107-UTR-C-linearis_contig9:3364597..3365078 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig9 3364598..3365078 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930704.9604359-CDS-C-linearis_contig9:3361946..3362024 | 1622930704.9604359-CDS-C-linearis_contig9:3361946..3362024 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig9 3361947..3362024 + |
| 1690881206.5158434-CDS-C-linearis_contig9:3361946..3362024 | 1690881206.5158434-CDS-C-linearis_contig9:3361946..3362024 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig9 3361947..3362024 + |
| 1622930704.9744546-CDS-C-linearis_contig9:3362986..3364597 | 1622930704.9744546-CDS-C-linearis_contig9:3362986..3364597 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig9 3362987..3364597 + |
| 1690881206.5243828-CDS-C-linearis_contig9:3362986..3364597 | 1690881206.5243828-CDS-C-linearis_contig9:3362986..3364597 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig9 3362987..3364597 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16719.1 >prot_C-linearis_contig9.16719.1 ID=prot_C-linearis_contig9.16719.1|Name=mRNA_C-linearis_contig9.16719.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=563bp
MGKKCTQPGGCPKQALFGVPGSKKREYCAIHALHGMVDIHSKRCGEPGCN KWPSYGVLGNKKALFCAPHARPGMLPVNGKRCGHPGCTKQPSFGMPGTKK REFCALHAVAGMVDVHTKRCARPGCTKHPSFGHVGGKKADFCSLHASGGM VNVISKSCAFPDCFKQASYGVGGSKRREYCARHAADGMVNVISKRCAHPG CTKWPSYGVAGGIKREFCAPHAEERTPGTCFGQKQKKKPQKNQMQQQQQQ QQQQQQQQQQQQQQQQQQQQEQQQQQQQQQLQLQLQLQLQLQQQQQQQQQ QQQQQQQQQQQLGGARGGSLNSYAYLPPPQQGAGGGTYNPTPQQGVGAGA YNPVAQQQGAGGGAYNPVTQQVVGGGAYNPIPQQGVAGGNTNAYNAYNPA PQQQAVTGGGNSSSGGSNYAYNPIPQQGTGVGNSSNYAYNPVPQQHPGGG GGGGGGGGGGGGSSKRELQRVGPIGLEQELLYPWPSATGHQAIVGAGGGG GSGGLMLSPQIPPGSQEEEAVVHSLTGLRKKRRKLTTGGVGAVMGASIGL PTAPSINPSGYM* back to topmRNA from alignment at C-linearis_contig9:3361625..3365078+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig9.16719.1 ID=mRNA_C-linearis_contig9.16719.1|Name=mRNA_C-linearis_contig9.16719.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3454bp|location=Sequence derived from alignment at C-linearis_contig9:3361625..3365078+ (Chordaria linearis ClinC8C monoicous) GGAAACAGACCAGCGCGAGAGAGGGTTGGAGAGAGAGATCGGAGAGGAGT
TGATACACCGCAAGCTCTCTCTTTCCCCGCCAGCAGAGCGAGAGAGGCAC
GCTTCTGCCTGATTTTCGTTGTAATCGAGGTGCTAAGGCTGCGAACCGAA
AGGCTTCTTCTCGACGACGTGTCATCTTTTTTCTCAAGCGGACCCAGGCC
GGGCCGGGGCGCATTGCAGCGGACAAGCGGGGAGAGAGGAGCTGGTTTTG
ATCGCTGACGCTTTTGATCGGTCTGTTCCGCCAGTGTACCACACCTTGGA
CGACACACACGCGGCAACAGCGATGGGGAAGAAGTGCACTCAGCCGGGCG
GGTGTCCCAAGCAGGCTTTGTTCGGGGTGCCCGGCAGCAAGAAGCGGGAG
GTGAGAGAGGGAGTCTTGGAGAAAATGGGCTGGTGTGTTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTTCCTCCTCGGCAGCT
GCGTCGCCGTTAGAACATTCCAACCAAAGGGGCCCATCCCCGCCCGTTCC
CTTCCTCAGCGCCATATGATCAACGATGCCAGCTAAACGGCTGCGTGTAG
CCGGTGTTCGCACTCACACAGCATCGATCTCCCTCCGTCTCGAAAGACCG
ACGAGCCGAGGGGTGACGGACTGGAAGTACCAAAAAACGAAAAACAGAGA
CTTGTGACTGAATGAACTTCCTCTCCATGTCGAACCTACTGCTTACACTT
TACCGCCGTTACTGCTGTACATACATAGCTGGGGGTGGCGACCCGGCGAC
GAGAGGGTTGGTGGAATCTACAGCGGCCCCCTGGAAATGACATTTTGCGC
AAGTTGGACGTCGACTGGCGACGTTTTGTGCTATTTTACTGAAAACACAC
ACACACACACACACACACACAGCAGACGCACACACGTTCACAACGGCCCA
CAATCGTTTTATCATGAGCCTGCCTCGCGCGATCTGCTGAGAGAGAGTTG
ACGAGTGTTTTGGGGGGCATACCTGAGGTTACAGCAGTAACGGACAATTT
CTCGGGAACGGCAGTCATGGCCATCATCCACGGTTCATGTGTGATGCGTC
GACTACTTATGTAGATGTGTCGCCTTTGTCGCCGCGGAAATTGTGTCCCT
CGCTTCCCCTACAACTTGAACCGAATCCAAGAAAGGGCGGGCACAGGGTC
AGAACTACAGCAATCAGCATTGATCAACAAAATACCCAAAGCGCTGCTAC
TGCTGTTGTTGTCGTATCCAAATGTCAAATGTTACACCGAAACTTGACCA
CAGCTGTACTCTTTCTTCTCTCGTCCCTCTTTGGCGAATATTTTTTGTTG
TGTTTCCTGCAGTACTGCGCGATACACGCCCTCCACGGGATGGTCGACAT
CCACAGCAAGAGATGCGGCGAGCCGGGCTGCAACAAGTGGCCGTCGTACG
GCGTCCTCGGCAACAAGAAGGCGCTGTTCTGCGCCCCGCACGCCCGCCCG
GGGATGCTCCCGGTGAACGGCAAGCGGTGCGGGCACCCGGGGTGCACCAA
GCAGCCGTCGTTCGGCATGCCCGGCACGAAGAAGCGCGAGTTCTGCGCCC
TGCACGCCGTGGCGGGCATGGTGGACGTCCACACCAAGAGGTGTGCCCGG
CCGGGTTGCACCAAGCACCCATCGTTCGGGCACGTCGGCGGCAAGAAGGC
GGACTTCTGCTCCCTGCACGCGTCCGGTGGCATGGTGAACGTGATCAGCA
AGAGCTGCGCGTTCCCGGACTGCTTCAAGCAGGCGTCCTACGGCGTCGGC
GGCAGCAAGCGGCGGGAGTACTGCGCGCGGCACGCCGCCGACGGGATGGT
GAACGTGATCAGCAAGAGGTGCGCGCACCCGGGTTGCACCAAGTGGCCGT
CGTACGGCGTGGCCGGCGGCATCAAGCGGGAGTTCTGCGCGCCCCACGCG
GAGGAGAGGACGCCCGGCACTTGCTTCGGCCAGAAGCAGAAGAAGAAGCC
GCAGAAGAATCAGATGCAGCAGCAACAGCAACAGCAACAGCAACAGCAAC
AGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAGAACAA
CAACAACAACAACAACAACAACAACTACAACTACAACTACAACTACAACT
ACAACTACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGC
AACAACAACAACAGCAACTCGGCGGCGCGCGCGGTGGCAGCCTCAACAGC
TACGCGTACCTCCCACCACCCCAGCAGGGAGCGGGCGGTGGAACGTACAA
CCCAACACCGCAGCAAGGAGTCGGAGCTGGTGCGTACAATCCCGTAGCGC
AGCAGCAGGGGGCGGGGGGCGGTGCGTACAACCCGGTGACCCAGCAGGTC
GTGGGAGGCGGCGCGTACAACCCGATACCCCAGCAGGGAGTGGCAGGTGG
CAACACCAACGCCTACAACGCCTACAACCCAGCGCCGCAGCAGCAGGCGG
TAACAGGCGGCGGCAACAGCAGCAGCGGAGGCAGCAACTACGCCTACAAC
CCAATCCCCCAGCAGGGCACGGGAGTCGGCAACAGCAGCAACTACGCTTA
CAATCCGGTTCCACAGCAGCACCCTGGGGGCGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCAGCTCGAAGCGTGAGCTCCAGCGTGTGGGG
CCGATTGGCCTTGAGCAAGAACTGCTCTACCCCTGGCCTTCCGCGACGGG
GCACCAGGCTATCGTCGGCGCGGGAGGTGGAGGAGGAAGCGGCGGCCTCA
TGCTCTCGCCGCAGATACCGCCGGGCTCGCAGGAGGAGGAGGCCGTGGTG
CACTCGCTGACGGGGCTGAGGAAGAAGCGCAGGAAGCTGACCACCGGCGG
GGTTGGTGCCGTTATGGGGGCCAGCATCGGGCTGCCCACTGCGCCCTCGA
TTAATCCCTCGGGGTATATGTAGCTGGCGCAAACAGGTGTGTATGCGTGT
GTGTGCGTTTGAAAATGACTGGATCTGCTCACCTTTTCGTTGTTACTCCG
AGTATTGGTACTACGTAATAACCCTTTTGACCACCCAACCGAAGCGTCAT
AACCGGTTTGTCGGTGCATTTGTATTTTTTCACGGCCGTTCAACGATGCA
CGCACTGCTGTTGAGCCGCGTTCCCACAGCATCCCTGGAAATAGTACCAA
GTATGTTGTTTTCTGTTTCCACTGCCTGAAACGTGTGAGGTTGTTTTCTC
GAAGTGGCAGTTTTCTGTTCAAGACAACCAGTGCGAGGGCGGAGGGGGAC
CCGAAGACCTTCCCCCATCAACCTCGTCGCTCGGGTCGTCCTTTCACCAT
CATACATACTTCGAAGTATGTATCAACCTTGCTCCGCATCAGGTTCTTCA
AACCAAGTACAAGTATGCCGGCCCCTTTTTTTTTTTTTTGCTGATCGCGC
CTGC back to topCoding sequence (CDS) from alignment at C-linearis_contig9:3361625..3365078+ >mRNA_C-linearis_contig9.16719.1 ID=mRNA_C-linearis_contig9.16719.1|Name=mRNA_C-linearis_contig9.16719.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3378bp|location=Sequence derived from alignment at C-linearis_contig9:3361625..3365078+ (Chordaria linearis ClinC8C monoicous) ATGGGGAAGAAGTGCACTCAGCCGGGCGGGTGTCCCAAGCAGGCTTTGTT CGGGGTGCCCGGCAGCAAGAAGCGGGAGATGGGGAAGAAGTGCACTCAGC CGGGCGGGTGTCCCAAGCAGGCTTTGTTCGGGGTGCCCGGCAGCAAGAAG CGGGAGTACTGCGCGATACACGCCCTCCACGGGATGGTCGACATCCACAG CAAGAGATGCGGCGAGCCGGGCTGCAACAAGTGGCCGTCGTACGGCGTCC TCGGCAACAAGAAGGCGCTGTTCTGCGCCCCGCACGCCCGCCCGGGGATG CTCCCGGTGAACGGCAAGCGGTGCGGGCACCCGGGGTGCACCAAGCAGCC GTCGTTCGGCATGCCCGGCACGAAGAAGCGCGAGTTCTGCGCCCTGCACG CCGTGGCGGGCATGGTGGACGTCCACACCAAGAGGTGTGCCCGGCCGGGT TGCACCAAGCACCCATCGTTCGGGCACGTCGGCGGCAAGAAGGCGGACTT CTGCTCCCTGCACGCGTCCGGTGGCATGGTGAACGTGATCAGCAAGAGCT GCGCGTTCCCGGACTGCTTCAAGCAGGCGTCCTACGGCGTCGGCGGCAGC AAGCGGCGGGAGTACTGCGCGCGGCACGCCGCCGACGGGATGGTGAACGT GATCAGCAAGAGGTGCGCGCACCCGGGTTGCACCAAGTGGCCGTCGTACG GCGTGGCCGGCGGCATCAAGCGGGAGTTCTGCGCGCCCCACGCGGAGGAG AGGACGCCCGGCACTTGCTTCGGCCAGAAGCAGAAGAAGAAGCCGCAGAA GAATCAGATGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAAC AGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAGAACAACAACAA CAACAACAACAACAACAACTACAACTACAACTACAACTACAACTACAACT ACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACAAC AACAACAGCAACTCGGCGGCGCGCGCGGTGGCAGCCTCAACAGCTACGCG TACCTCCCACCACCCCAGCAGGGAGCGGGCGGTGGAACGTACAACCCAAC ACCGCAGCAAGGAGTCGGAGCTGGTGCGTACAATCCCGTAGCGCAGCAGC AGGGGGCGGGGGGCGGTGCGTACAACCCGGTGACCCAGCAGGTCGTGGGA GGCGGCGCGTACAACCCGATACCCCAGCAGGGAGTGGCAGGTGGCAACAC CAACGCCTACAACGCCTACAACCCAGCGCCGCAGCAGCAGGCGGTAACAG GCGGCGGCAACAGCAGCAGCGGAGGCAGCAACTACGCCTACAACCCAATC CCCCAGCAGGGCACGGGAGTCGGCAACAGCAGCAACTACGCTTACAATCC GGTTCCACAGCAGCACCCTGGGGGCGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGCAGCTCGAAGCGTGAGCTCCAGCGTGTGGGGCCGATT GGCCTTGAGCAAGAACTGCTCTACCCCTGGCCTTCCGCGACGGGGCACCA GGCTATCGTCGGCGCGGGAGGTGGAGGAGGAAGCGGCGGCCTCATGCTCT CGCCGCAGATACCGCCGGGCTCGCAGGAGGAGGAGGCCGTGGTGCACTCG CTGACGGGGCTGAGGAAGAAGCGCAGGAAGCTGACCACCGGCGGGGTTGG TGCCGTTATGGGGGCCAGCATCGGGCTGCCCACTGCGCCCTCGATTAATC CCTCGGGGTATATGTAGTACTGCGCGATACACGCCCTCCACGGGATGGTC GACATCCACAGCAAGAGATGCGGCGAGCCGGGCTGCAACAAGTGGCCGTC GTACGGCGTCCTCGGCAACAAGAAGGCGCTGTTCTGCGCCCCGCACGCCC GCCCGGGGATGCTCCCGGTGAACGGCAAGCGGTGCGGGCACCCGGGGTGC ACCAAGCAGCCGTCGTTCGGCATGCCCGGCACGAAGAAGCGCGAGTTCTG CGCCCTGCACGCCGTGGCGGGCATGGTGGACGTCCACACCAAGAGGTGTG CCCGGCCGGGTTGCACCAAGCACCCATCGTTCGGGCACGTCGGCGGCAAG AAGGCGGACTTCTGCTCCCTGCACGCGTCCGGTGGCATGGTGAACGTGAT CAGCAAGAGCTGCGCGTTCCCGGACTGCTTCAAGCAGGCGTCCTACGGCG TCGGCGGCAGCAAGCGGCGGGAGTACTGCGCGCGGCACGCCGCCGACGGG ATGGTGAACGTGATCAGCAAGAGGTGCGCGCACCCGGGTTGCACCAAGTG GCCGTCGTACGGCGTGGCCGGCGGCATCAAGCGGGAGTTCTGCGCGCCCC ACGCGGAGGAGAGGACGCCCGGCACTTGCTTCGGCCAGAAGCAGAAGAAG AAGCCGCAGAAGAATCAGATGCAGCAGCAACAGCAACAGCAACAGCAACA GCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAG AACAACAACAACAACAACAACAACAACAACTACAACTACAACTACAACTA CAACTACAACTACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACA ACAGCAACAACAACAACAGCAACTCGGCGGCGCGCGCGGTGGCAGCCTCA ACAGCTACGCGTACCTCCCACCACCCCAGCAGGGAGCGGGCGGTGGAACG TACAACCCAACACCGCAGCAAGGAGTCGGAGCTGGTGCGTACAATCCCGT AGCGCAGCAGCAGGGGGCGGGGGGCGGTGCGTACAACCCGGTGACCCAGC AGGTCGTGGGAGGCGGCGCGTACAACCCGATACCCCAGCAGGGAGTGGCA GGTGGCAACACCAACGCCTACAACGCCTACAACCCAGCGCCGCAGCAGCA GGCGGTAACAGGCGGCGGCAACAGCAGCAGCGGAGGCAGCAACTACGCCT ACAACCCAATCCCCCAGCAGGGCACGGGAGTCGGCAACAGCAGCAACTAC GCTTACAATCCGGTTCCACAGCAGCACCCTGGGGGCGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGCAGCTCGAAGCGTGAGCTCCAGCGTG TGGGGCCGATTGGCCTTGAGCAAGAACTGCTCTACCCCTGGCCTTCCGCG ACGGGGCACCAGGCTATCGTCGGCGCGGGAGGTGGAGGAGGAAGCGGCGG CCTCATGCTCTCGCCGCAGATACCGCCGGGCTCGCAGGAGGAGGAGGCCG TGGTGCACTCGCTGACGGGGCTGAGGAAGAAGCGCAGGAAGCTGACCACC GGCGGGGTTGGTGCCGTTATGGGGGCCAGCATCGGGCTGCCCACTGCGCC CTCGATTAATCCCTCGGGGTATATGTAG back to top
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