mRNA_C-linearis_contig9.16711.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16711.1
Unique NamemRNA_C-linearis_contig9.16711.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16711.1 vs. uniprot
Match: A0A6H5KU44_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU44_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.310e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 MVVFLAVDPQLIISAIAESFEGVPNTMKALQYLDKIIHLPFCIPRTSEAQRLNYLNDLL 177
            MVVFLAVDP++I+SAI +  E VP+ +  L YL+KIIH+PFC+P+ S+  + NYL  LL
Sbjct:  144 MVVFLAVDPRIIVSAIDKKLEDVPDEVNGLVYLEKIIHIPFCLPQISKEDQRNYLQGLL 202
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BLAST of mRNA_C-linearis_contig9.16711.1 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.390e-6
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MVVFLAVDPQLIISAI-AESFEGVPNTMKALQYLDKIIHLPFCIPRTSEAQRLNYLNDLL 177
            +VV LA+DP++IISAI A+    V   +   +YLDKIIH+PFC+P  ++ QRL  ++  L
Sbjct:  466 VVVILALDPRVIISAIEADLGPEVRKEVSGSEYLDKIIHVPFCVPFGTQKQRLTLIDSWL 525
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU44_9PHAE1.310e-1255.93KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JLB7_9PHAE8.390e-646.67KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3234101..3234445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.953453-CDS-C-linearis_contig9:3234100..32342471622930759.953453-CDS-C-linearis_contig9:3234100..3234247Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3234101..3234247 -
1690881235.2018256-CDS-C-linearis_contig9:3234100..32342471690881235.2018256-CDS-C-linearis_contig9:3234100..3234247Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3234101..3234247 -
1622930759.9732113-CDS-C-linearis_contig9:3234367..32344451622930759.9732113-CDS-C-linearis_contig9:3234367..3234445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3234368..3234445 -
1690881235.2152975-CDS-C-linearis_contig9:3234367..32344451690881235.2152975-CDS-C-linearis_contig9:3234367..3234445Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3234368..3234445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16711.1prot_C-linearis_contig9.16711.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3234101..3234445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16711.1

>prot_C-linearis_contig9.16711.1 ID=prot_C-linearis_contig9.16711.1|Name=mRNA_C-linearis_contig9.16711.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
MVVFLAVDPQLIISAIAESFEGVPNTMKALQYLDKIIHLPFCIPRTSEAQ
RLNYLNDLLNGDDNSSRKTLRRLQQ
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mRNA from alignment at C-linearis_contig9:3234101..3234445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16711.1 ID=mRNA_C-linearis_contig9.16711.1|Name=mRNA_C-linearis_contig9.16711.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at C-linearis_contig9:3234101..3234445- (Chordaria linearis ClinC8C monoicous)
ATGGTTGTGTTCCTTGCGGTGGACCCACAGCTAATCATCTCTGCCATTGC
GGAATCCTTCGAAGGCGTGCCTAACACGGTAAGCTGTGGTTTCGCCTGGG
TATCCCGCACGCGGGCCATGAACATGGCTTAATAGTTTCTTCATGAAGTT
TGAAGCTCGGCTGGTTACTGACATTGCTCAATTTGCGACATCCGGCAGAT
GAAGGCGCTGCAGTATCTCGACAAGATTATACACCTTCCGTTCTGCATTC
CACGAACATCCGAAGCGCAGCGGCTCAACTACCTCAACGACCTCCTCAAT
GGTGACGACAATTCGTCCCGTAAGACACTCAGGCGACTGCAGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3234101..3234445-

>mRNA_C-linearis_contig9.16711.1 ID=mRNA_C-linearis_contig9.16711.1|Name=mRNA_C-linearis_contig9.16711.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at C-linearis_contig9:3234101..3234445- (Chordaria linearis ClinC8C monoicous)
ATGGTTGTGTTCCTTGCGGTGGACCCACAGCTAATCATCTCTGCCATTGC
GGAATCCTTCGAAGGCGTGCCTAACACGATGGTTGTGTTCCTTGCGGTGG
ACCCACAGCTAATCATCTCTGCCATTGCGGAATCCTTCGAAGGCGTGCCT
AACACGATGAAGGCGCTGCAGTATCTCGACAAGATTATACACCTTCCGTT
CTGCATTCCACGAACATCCGAAGCGCAGCGGCTCAACTACCTCAACGACC
TCCTCAATGGTGACGACAATTCGTCCCGTAAGACACTCAGGCGACTGCAG
CAGATGAAGGCGCTGCAGTATCTCGACAAGATTATACACCTTCCGTTCTG
CATTCCACGAACATCCGAAGCGCAGCGGCTCAACTACCTCAACGACCTCC
TCAATGGTGACGACAATTCGTCCCGTAAGACACTCAGGCGACTGCAGCAG
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