mRNA_C-linearis_contig9.16708.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16708.1
Unique NamemRNA_C-linearis_contig9.16708.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3215611..3216331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size721
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16708.1prot_C-linearis_contig9.16708.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3215705..3216169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.1141207-UTR-C-linearis_contig9:3215610..32157041622930707.1141207-UTR-C-linearis_contig9:3215610..3215704Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3215611..3215704 +
1690881207.3080542-UTR-C-linearis_contig9:3215610..32157041690881207.3080542-UTR-C-linearis_contig9:3215610..3215704Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3215611..3215704 +
1622930707.1442487-UTR-C-linearis_contig9:3216169..32163311622930707.1442487-UTR-C-linearis_contig9:3216169..3216331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3216170..3216331 +
1690881207.3318465-UTR-C-linearis_contig9:3216169..32163311690881207.3318465-UTR-C-linearis_contig9:3216169..3216331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3216170..3216331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.1311874-CDS-C-linearis_contig9:3215704..32161691622930707.1311874-CDS-C-linearis_contig9:3215704..3216169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3215705..3216169 +
1690881207.320939-CDS-C-linearis_contig9:3215704..32161691690881207.320939-CDS-C-linearis_contig9:3215704..3216169Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3215705..3216169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16708.1

>prot_C-linearis_contig9.16708.1 ID=prot_C-linearis_contig9.16708.1|Name=mRNA_C-linearis_contig9.16708.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MLSCGRRFRGVALTAAARGPLTRPFPGAAGVFLANDGSGNFFNTVSSSPL
ISLASALVAAALLGGAFFDVFPSPSRSTSALPPPPTSPPPLALPRLPINA
SNSRAVAATESLEEDEDEDDELSSPELPLFWTPLWSSPAFPSSSWRGPAL
LHSR*
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mRNA from alignment at C-linearis_contig9:3215611..3216331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16708.1 ID=mRNA_C-linearis_contig9.16708.1|Name=mRNA_C-linearis_contig9.16708.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=721bp|location=Sequence derived from alignment at C-linearis_contig9:3215611..3216331+ (Chordaria linearis ClinC8C monoicous)
CTCCTCCTCCTCCTCCTCCTCAAGCATGTCATCCAAACCGCGTTCGAGGC
CAGAGTCCTCTCCATCCGATTCCACCCCATCTGCTTGGTAGACTATGCTC
TCTTGCGGCCGACGCTTTCGAGGAGTCGCCTTAACTGCAGCTGCACGGGG
CCCGCTCACGCGTCCATTCCCAGGTGCGGCAGGCGTCTTTCTTGCCAACG
ACGGCAGCGGTAACTTTTTCAACACCGTCTCTTCATCGCCCTTGATCTCG
CTAGCTTCGGCGTTGGTTGCAGCTGCTCTACTAGGCGGGGCCTTCTTTGA
TGTCTTCCCTTCGCCGTCGCGGTCAACATCGGCACTTCCACCACCGCCGA
CGTCACCGCCGCCGTTGGCGCTTCCCAGGTTACCCATAAACGCCTCAAAC
TCGAGGGCGGTGGCAGCAACCGAGTCGCTAGAAGAAGACGAAGACGAAGA
CGATGAACTCTCATCGCCGGAGCTTCCGCTCTTCTGGACTCCGCTTTGGT
CCTCGCCTGCCTTCCCTTCCTCTTCTTGGCGCGGTCCCGCTTTGCTCCAC
AGCCGCTGATGCCGGTTGCCGTGACTTGCGCTGTCCCTCCCGGCGCCGTC
ACTGCCGGAATCAGCGCCGTCTAAGTCCTCCAAGAGGTCGTCGAGATCGT
TGTCTTCGTCGGTGTCGTCGAGTGCCTTGGTAAAGTCGTCGAGGCCATCG
CCACTATCGCTCGATGACGAT
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Coding sequence (CDS) from alignment at C-linearis_contig9:3215611..3216331+

>mRNA_C-linearis_contig9.16708.1 ID=mRNA_C-linearis_contig9.16708.1|Name=mRNA_C-linearis_contig9.16708.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig9:3215611..3216331+ (Chordaria linearis ClinC8C monoicous)
ATGCTCTCTTGCGGCCGACGCTTTCGAGGAGTCGCCTTAACTGCAGCTGC
ACGGGGCCCGCTCACGCGTCCATTCCCAGGTGCGGCAGGCGTCTTTCTTG
CCAACGACGGCAGCGGTAACTTTTTCAACACCGTCTCTTCATCGCCCTTG
ATCTCGCTAGCTTCGGCGTTGGTTGCAGCTGCTCTACTAGGCGGGGCCTT
CTTTGATGTCTTCCCTTCGCCGTCGCGGTCAACATCGGCACTTCCACCAC
CGCCGACGTCACCGCCGCCGTTGGCGCTTCCCAGGTTACCCATAAACGCC
TCAAACTCGAGGGCGGTGGCAGCAACCGAGTCGCTAGAAGAAGACGAAGA
CGAAGACGATGAACTCTCATCGCCGGAGCTTCCGCTCTTCTGGACTCCGC
TTTGGTCCTCGCCTGCCTTCCCTTCCTCTTCTTGGCGCGGTCCCGCTTTG
CTCCACAGCCGCTGAATGCTCTCTTGCGGCCGACGCTTTCGAGGAGTCGC
CTTAACTGCAGCTGCACGGGGCCCGCTCACGCGTCCATTCCCAGGTGCGG
CAGGCGTCTTTCTTGCCAACGACGGCAGCGGTAACTTTTTCAACACCGTC
TCTTCATCGCCCTTGATCTCGCTAGCTTCGGCGTTGGTTGCAGCTGCTCT
ACTAGGCGGGGCCTTCTTTGATGTCTTCCCTTCGCCGTCGCGGTCAACAT
CGGCACTTCCACCACCGCCGACGTCACCGCCGCCGTTGGCGCTTCCCAGG
TTACCCATAAACGCCTCAAACTCGAGGGCGGTGGCAGCAACCGAGTCGCT
AGAAGAAGACGAAGACGAAGACGATGAACTCTCATCGCCGGAGCTTCCGC
TCTTCTGGACTCCGCTTTGGTCCTCGCCTGCCTTCCCTTCCTCTTCTTGG
CGCGGTCCCGCTTTGCTCCACAGCCGCTGA
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