mRNA_C-linearis_contig9.16702.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16702.1
Unique NamemRNA_C-linearis_contig9.16702.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3136941..3137785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size846
Cds size729
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.0528123-CDS-C-linearis_contig9:3136940..31376691622930707.0528123-CDS-C-linearis_contig9:3136940..3137669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3136941..3137669 +
1690881207.2856576-CDS-C-linearis_contig9:3136940..31376691690881207.2856576-CDS-C-linearis_contig9:3136940..3137669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3136941..3137669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.0700018-UTR-C-linearis_contig9:3137669..31377851622930707.0700018-UTR-C-linearis_contig9:3137669..3137785Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3137670..3137785 +
1690881207.296877-UTR-C-linearis_contig9:3137669..31377851690881207.296877-UTR-C-linearis_contig9:3137669..3137785Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3137670..3137785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16702.1prot_C-linearis_contig9.16702.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3136941..3137669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16702.1

>prot_C-linearis_contig9.16702.1 ID=prot_C-linearis_contig9.16702.1|Name=mRNA_C-linearis_contig9.16702.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=243bp
ADRTANYQGDPREREKAQHIDVQHSQQPQPQQQPQHPVLTAPALSALESE
NLQNAIKAGFVVGGHTDPGRNGLWVQPQGPVPAGAIMGQITYCGRCGHTG
HHARICRGPPRFFGECAACGESGHMARNCRFSDSNPVFRHHQQQQQRLQQ
QQPPRSQTYQPRARHLNAIGQPQQYNSMQQDFQASCKIGSFVPTQQSYIP
SPPQQQRLNSPPQDFKVAGDGGWGAQPGLMPQPQQQLHQPQQ*
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mRNA from alignment at C-linearis_contig9:3136941..3137785+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16702.1 ID=mRNA_C-linearis_contig9.16702.1|Name=mRNA_C-linearis_contig9.16702.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=845bp|location=Sequence derived from alignment at C-linearis_contig9:3136941..3137785+ (Chordaria linearis ClinC8C monoicous)
GCCGACAGGACGGCAAATTATCAGGGTGACCCGAGGGAACGGGAAAAGGC
CCAACACATCGACGTGCAGCATTCGCAGCAACCGCAGCCGCAACAGCAGC
CGCAACACCCTGTCCTCACCGCACCTGCCCTGTCTGCCCTCGAATCCGAG
AATCTGCAGAACGCAATAAAGGCCGGTTTTGTGGTCGGCGGGCACACCGA
CCCTGGCAGAAATGGGTTGTGGGTCCAGCCGCAAGGTCCCGTCCCTGCCG
GGGCCATCATGGGACAGATCACCTACTGTGGTCGATGCGGGCACACCGGA
CATCACGCCCGCATCTGCCGGGGGCCGCCGAGATTTTTCGGGGAGTGCGC
GGCATGCGGAGAATCTGGCCATATGGCCCGAAACTGCAGATTCTCCGACT
CCAACCCCGTGTTCCGCCACCACCAGCAACAACAGCAACGATTGCAGCAG
CAGCAGCCGCCTCGGTCCCAGACGTACCAGCCGCGGGCGCGCCACCTCAA
CGCCATCGGGCAGCCCCAGCAGTACAACAGTATGCAGCAGGACTTTCAGG
CCAGCTGCAAAATCGGCAGCTTCGTCCCGACACAGCAGTCCTACATTCCG
TCGCCGCCTCAGCAGCAGCGACTCAACAGCCCTCCGCAGGACTTCAAGGT
GGCCGGCGATGGTGGTTGGGGAGCCCAGCCGGGGCTAATGCCGCAGCCGC
AGCAGCAGCTTCATCAACCGCAGCAGTAGTTCCCGCAGCAGCAGCAGCAG
CTTCATCAGCAGCAACAGCAGCAATAGCAGCAGCAGCATTTTTCGTGTGG
CGGCGCCGGCGTCGGGGATGGTGGTTTTTCGCAGCAGGAGCAACC
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Coding sequence (CDS) from alignment at C-linearis_contig9:3136941..3137785+

>mRNA_C-linearis_contig9.16702.1 ID=mRNA_C-linearis_contig9.16702.1|Name=mRNA_C-linearis_contig9.16702.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at C-linearis_contig9:3136941..3137785+ (Chordaria linearis ClinC8C monoicous)
GCCGACAGGACGGCAAATTATCAGGGTGACCCGAGGGAACGGGAAAAGGC
CCAACACATCGACGTGCAGCATTCGCAGCAACCGCAGCCGCAACAGCAGC
CGCAACACCCTGTCCTCACCGCACCTGCCCTGTCTGCCCTCGAATCCGAG
AATCTGCAGAACGCAATAAAGGCCGGTTTTGTGGTCGGCGGGCACACCGA
CCCTGGCAGAAATGGGTTGTGGGTCCAGCCGCAAGGTCCCGTCCCTGCCG
GGGCCATCATGGGACAGATCACCTACTGTGGTCGATGCGGGCACACCGGA
CATCACGCCCGCATCTGCCGGGGGCCGCCGAGATTTTTCGGGGAGTGCGC
GGCATGCGGAGAATCTGGCCATATGGCCCGAAACTGCAGATTCTCCGACT
CCAACCCCGTGTTCCGCCACCACCAGCAACAACAGCAACGATTGCAGCAG
CAGCAGCCGCCTCGGTCCCAGACGTACCAGCCGCGGGCGCGCCACCTCAA
CGCCATCGGGCAGCCCCAGCAGTACAACAGTATGCAGCAGGACTTTCAGG
CCAGCTGCAAAATCGGCAGCTTCGTCCCGACACAGCAGTCCTACATTCCG
TCGCCGCCTCAGCAGCAGCGACTCAACAGCCCTCCGCAGGACTTCAAGGT
GGCCGGCGATGGTGGTTGGGGAGCCCAGCCGGGGCTAATGCCGCAGCCGC
AGCAGCAGCTTCATCAACCGCAGCAGTAGGCCGACAGGACGGCAAATTAT
CAGGGTGACCCGAGGGAACGGGAAAAGGCCCAACACATCGACGTGCAGCA
TTCGCAGCAACCGCAGCCGCAACAGCAGCCGCAACACCCTGTCCTCACCG
CACCTGCCCTGTCTGCCCTCGAATCCGAGAATCTGCAGAACGCAATAAAG
GCCGGTTTTGTGGTCGGCGGGCACACCGACCCTGGCAGAAATGGGTTGTG
GGTCCAGCCGCAAGGTCCCGTCCCTGCCGGGGCCATCATGGGACAGATCA
CCTACTGTGGTCGATGCGGGCACACCGGACATCACGCCCGCATCTGCCGG
GGGCCGCCGAGATTTTTCGGGGAGTGCGCGGCATGCGGAGAATCTGGCCA
TATGGCCCGAAACTGCAGATTCTCCGACTCCAACCCCGTGTTCCGCCACC
ACCAGCAACAACAGCAACGATTGCAGCAGCAGCAGCCGCCTCGGTCCCAG
ACGTACCAGCCGCGGGCGCGCCACCTCAACGCCATCGGGCAGCCCCAGCA
GTACAACAGTATGCAGCAGGACTTTCAGGCCAGCTGCAAAATCGGCAGCT
TCGTCCCGACACAGCAGTCCTACATTCCGTCGCCGCCTCAGCAGCAGCGA
CTCAACAGCCCTCCGCAGGACTTCAAGGTGGCCGGCGATGGTGGTTGGGG
AGCCCAGCCGGGGCTAATGCCGCAGCCGCAGCAGCAGCTTCATCAACCGC
AGCAGTAG
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