mRNA_C-linearis_contig9.16679.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16679.1
Unique NamemRNA_C-linearis_contig9.16679.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16679.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.130e-21
Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = 2 
Query:  158 VRQQGLKLMLEDMRLVVEYGSRGGGRTSKEKMKCLNGGLDYYIIAHNDQKENNDRQEFTCNMNVTPPNFQHRLRA---TGTACTTASQEDRCTTALMFNVPYKGPNRSMSDNVVNFAIQRFTR 517
            ++Q GL +++ED  LVVEYGSRGGG T++ K K + G LD+YI+AH++   +     FTCN  VTP +F  +L A    G+  +TAS   R  + LM +VP+KG  R   DNVV FAIQR+T+
Sbjct:  702 LQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTASGR-RIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWTK 823
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BLAST of mRNA_C-linearis_contig9.16679.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.590e-19
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 2 
Query:  158 VRQQGLKLMLEDMRLVVEYGSRGGGRTSKEKMKCLNGGLDYYIIAHNDQKENNDRQEFTCNMNVTPPNFQHRLRA---TGTACTTASQEDRCTTALMFNVPYKGPNRSMSDNVVNFAIQRFTR 517
            ++Q GL +++ED  LVVEYGSRGGG T++ K K + G LD+YI+AH++   +     FTCN  VTP +F  R  A    G+  +TAS   R  + LM +VP KG  R   DNVV FAIQR+T+
Sbjct:  201 LQQPGLGMVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTASGR-RIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWTK 322
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE7.130e-2147.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI1.590e-1947.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2783113..2784916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size923
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16679.1prot_C-linearis_contig9.16679.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2783849..2784459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930754.8704388-UTR-C-linearis_contig9:2783112..27833071622930754.8704388-UTR-C-linearis_contig9:2783112..2783307Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2783113..2783307 -
1690881232.5024192-UTR-C-linearis_contig9:2783112..27833071690881232.5024192-UTR-C-linearis_contig9:2783112..2783307Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2783113..2783307 -
1622930754.8826215-UTR-C-linearis_contig9:2783751..27838481622930754.8826215-UTR-C-linearis_contig9:2783751..2783848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2783752..2783848 -
1690881232.5205307-UTR-C-linearis_contig9:2783751..27838481690881232.5205307-UTR-C-linearis_contig9:2783751..2783848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2783752..2783848 -
1622930754.9264343-UTR-C-linearis_contig9:2784459..27844921622930754.9264343-UTR-C-linearis_contig9:2784459..2784492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2784460..2784492 -
1690881232.552521-UTR-C-linearis_contig9:2784459..27844921690881232.552521-UTR-C-linearis_contig9:2784459..2784492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2784460..2784492 -
1622930754.9433396-UTR-C-linearis_contig9:2784768..27849161622930754.9433396-UTR-C-linearis_contig9:2784768..2784916Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2784769..2784916 -
1690881232.564103-UTR-C-linearis_contig9:2784768..27849161690881232.564103-UTR-C-linearis_contig9:2784768..2784916Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2784769..2784916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930754.8964512-CDS-C-linearis_contig9:2783848..27839721622930754.8964512-CDS-C-linearis_contig9:2783848..2783972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2783849..2783972 -
1690881232.5326753-CDS-C-linearis_contig9:2783848..27839721690881232.5326753-CDS-C-linearis_contig9:2783848..2783972Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2783849..2783972 -
1622930754.90994-CDS-C-linearis_contig9:2784133..27844591622930754.90994-CDS-C-linearis_contig9:2784133..2784459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2784134..2784459 -
1690881232.5427434-CDS-C-linearis_contig9:2784133..27844591690881232.5427434-CDS-C-linearis_contig9:2784133..2784459Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2784134..2784459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16679.1

>prot_C-linearis_contig9.16679.1 ID=prot_C-linearis_contig9.16679.1|Name=mRNA_C-linearis_contig9.16679.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=150bp
MLEDMRLVVEYGSRGGGRTSKEKMKCLNGGLDYYIIAHNDQKENNDRQEF
TCNMNVTPPNFQHRLRATGTACTTASQEDRCTTALMFNVPYKGPNRSMSD
NVVNFAIQRFTRYRPHFHSRVRWGRRTCSILREKVQGLRRILSEGRRRG*
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mRNA from alignment at C-linearis_contig9:2783113..2784916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16679.1 ID=mRNA_C-linearis_contig9.16679.1|Name=mRNA_C-linearis_contig9.16679.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1804bp|location=Sequence derived from alignment at C-linearis_contig9:2783113..2784916- (Chordaria linearis ClinC8C monoicous)
GCGCCGCATCTTCTGACGCGCACTCCAAACGCCGACAGCCTGCTGAAGGG
GATCCTGTTCCACTTATGCACAGATGCGCTTCACCCTAGAGGCACTCTCA
TGGTGTCCATGCCTATCCCGTTCTACGAACACTCAGGGCTAATAGCCGGT
ACGTTCCGTGTCCGATCTGTGACCGCGGAGGGTTTGCTTGCTTCTTGTGA
GTTTGCGCTCTTTTCATATTGCATTTCAGTGAGCGAACACTCTCCGTGTT
GGCTGTGACTGCGCCCAAGGATTTTAGGCCGCCATGAAAATGGCGGTTGA
TTGCTGTGTGTTGTTGTTGAGATCAGAGTTAGTTGCAACCCGCCTCCCCA
GCAGGCTTTCCCTCAGACGAAACAAACGTTCTTCTGACGTTGTTTTCCTG
GGCTATTTCCCGCTTCTTCCGCAGATCATCTAAGTAAGGCAGCAAGGCCT
GAAGCTCATGCTTGAAGACATGAGGTTGGTGGTGGAATACGGCTCGAGGG
GAGGGGGAAGAACTAGCAAGGAGAAGATGAAGTGTCTCAACGGTGGGCTG
GACTACTACATCATCGCCCACAATGACCAGAAGGAGAACAATGACCGCCA
AGAATTCACCTGCAACATGAACGTGACGCCGCCTAACTTCCAACACCGAC
TTAGAGCCACAGGAACGGCGTGCACCACCGCCAGCCAGGAGGATCGCTGT
ACGACGGCGTTGATGTTCAACGTGCCTTACAAGGGGCCTAACCGGAGCAT
GTCGGACAATGTCGTCAACTTTGCTATTCAGCGGTAGGGCATTGGTGTAG
GTGAATGGGTGACCGGGATTGTAATACTTTCTACGTTAGTTAGCGGTCCA
CCCCAACACTTCCCATTCTTTTGTTTTGTGGCCTCATCGTGATCATCGCG
CGGCTGCTTTTTTTTTGTGTTGACAAACGCCGCTTTGCGTGCAGGTTCAC
CAGATACCGTCCTCACTTTCACAGCCGAGTCCGATGGGGTCGCCGAACGT
GCAGCATTCTACGGGAAAAGGTTCAAGGGCTTCGTCGCATCCTCTCAGAA
GGACGAAGACGAGGCTAAGGCGGCCAAGGGAGACGCCTGGAGGAGCCCTA
CTGACGAAGTGCAGAAACGTGCGGAGGGTGCTTTCGACGAGGCCTACAGG
ATGGGAAAAGTTGCGGTGAGTACTTATAACAGAGAGTCAGTCTGCCGGGA
TTCTGCGTGAGGGGTGGGGTGATGATGATTTTGCGTGAAACCTCGCTCGA
ACATCAACCAATCCTTGTTTTCCGAGCGGTGTATAATGGTGGAGCATTTT
CCATGTAATATTACCTGCTCGGTATTTTCTTTCCCGAGGTGTGCCAAACT
GCAAAATGATACCTGTAAACAACAGAAGAAGCGTATATACAATACGTGAG
CAACAGTCTACTTCTACTTTTTCCTCTTGTAGTTGTCTGCCGTCAAGGGG
CGGGACATACCGTGACGCAAAGGCATGGATTTTGTTTTGTGTTGTTCTTT
AGGAGCGATCGCTTCTATCGCTTGTCACGACGAGCGCCGCGGTCTTGTTG
TAGATAAAGAAATAACTTTACGAACACGCTGCGGCTGCCCTGATGGTTGA
CATGAACAGCGGCAGTCTACGACCTCTTCTTCTTTGAGGTACATCTGCAA
CGGTGTACTCCCTGACGGCATCCCGATGGGCACGACGCCAACGAGGATTC
TATCAGACGTTTTTGCCCAAAAAACGTGACTAAAACTGCCGCCGGGGGCC
GTAGTTCTCACCGACGATCTGCTGGCACTGTGTACTTCACTGGCATCTCA
GCTC
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Coding sequence (CDS) from alignment at C-linearis_contig9:2783113..2784916-

>mRNA_C-linearis_contig9.16679.1 ID=mRNA_C-linearis_contig9.16679.1|Name=mRNA_C-linearis_contig9.16679.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at C-linearis_contig9:2783113..2784916- (Chordaria linearis ClinC8C monoicous)
ATGCTTGAAGACATGAGGTTGGTGGTGGAATACGGCTCGAGGGGAGGGGG
AAGAACTAGCAAGGAGAAGATGAAGTGTCTCAACGGTGGGCTGGACTACT
ACATCATCGCCCACAATGACCAGAAGGAGAACAATGACCGCCAAGAATTC
ACCTGCAACATGAACGTGACGCCGCCTAACTTCCAACACCGACTTAGAGC
CACAGGAACGGCGTGCACCACCGCCAGCCAGGAGGATCGCTGTACGACGG
CGTTGATGTTCAACGTGCCTTACAAGGGGCCTAACCGGAGCATGTCGGAC
AATGTCGTCAACTTTGCTATTCAGCGATGCTTGAAGACATGAGGTTGGTG
GTGGAATACGGCTCGAGGGGAGGGGGAAGAACTAGCAAGGAGAAGATGAA
GTGTCTCAACGGTGGGCTGGACTACTACATCATCGCCCACAATGACCAGA
AGGAGAACAATGACCGCCAAGAATTCACCTGCAACATGAACGTGACGCCG
CCTAACTTCCAACACCGACTTAGAGCCACAGGAACGGCGTGCACCACCGC
CAGCCAGGAGGATCGCTGTACGACGGCGTTGATGTTCAACGTGCCTTACA
AGGGGCCTAACCGGAGCATGTCGGACAATGTCGTCAACTTTGCTATTCAG
CGGTTCACCAGATACCGTCCTCACTTTCACAGCCGAGTCCGATGGGGTCG
CCGAACGTGCAGCATTCTACGGGAAAAGGTTCAAGGGCTTCGTCGCATCC
TCTCAGAAGGACGAAGACGAGGCTAAGTTCACCAGATACCGTCCTCACTT
TCACAGCCGAGTCCGATGGGGTCGCCGAACGTGCAGCATTCTACGGGAAA
AGGTTCAAGGGCTTCGTCGCATCCTCTCAGAAGGACGAAGACGAGGCTAA
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