mRNA_C-linearis_contig9.16674.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16674.1
Unique NamemRNA_C-linearis_contig9.16674.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2683894..2684689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size598
Cds size432
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16674.1prot_C-linearis_contig9.16674.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2684058..2684689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.5783148-UTR-C-linearis_contig9:2683893..26840571622930703.5783148-UTR-C-linearis_contig9:2683893..2684057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2683894..2684057 -
1690881205.7705276-UTR-C-linearis_contig9:2683893..26840571690881205.7705276-UTR-C-linearis_contig9:2683893..2684057Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2683894..2684057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930703.5971894-CDS-C-linearis_contig9:2684057..26843151622930703.5971894-CDS-C-linearis_contig9:2684057..2684315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2684058..2684315 -
1690881205.7810373-CDS-C-linearis_contig9:2684057..26843151690881205.7810373-CDS-C-linearis_contig9:2684057..2684315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2684058..2684315 -
1622930703.614999-CDS-C-linearis_contig9:2684515..26846891622930703.614999-CDS-C-linearis_contig9:2684515..2684689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2684516..2684689 -
1690881205.7970908-CDS-C-linearis_contig9:2684515..26846891690881205.7970908-CDS-C-linearis_contig9:2684515..2684689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2684516..2684689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16674.1

>prot_C-linearis_contig9.16674.1 ID=prot_C-linearis_contig9.16674.1|Name=mRNA_C-linearis_contig9.16674.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
QTARAGALDTLRWARQAGCLFTEEACAYAARGGHLSVLRYLREIGCPWNE
RTCLLAATGGHLDVLKYEQANGCGWHEDTSLAAAGAGFIDVLRWAIEEGC
PFNWRTCSAASGGGHLEILKFLRGKGCAWSSSTLFVGRAWRVF*
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mRNA from alignment at C-linearis_contig9:2683894..2684689-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16674.1 ID=mRNA_C-linearis_contig9.16674.1|Name=mRNA_C-linearis_contig9.16674.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=796bp|location=Sequence derived from alignment at C-linearis_contig9:2683894..2684689- (Chordaria linearis ClinC8C monoicous)
CAGACTGCGCGGGCGGGGGCGTTGGATACTTTGCGGTGGGCAAGACAAGC
CGGATGTCTCTTTACGGAGGAAGCATGCGCCTACGCCGCGCGGGGAGGGC
ATCTGAGCGTGCTGCGATACCTGAGGGAAATTGGATGCCCTTGGAATGAG
CGGACGTGCCTCTTGGCTGCAACGGTGAGCGAATCTACAGTGTGTGAAAT
GGTTACGGCGAACTGCGTTTTAGAGCTGTTTTTCCTTCAAGAAGTCGATG
GTTTGTAGTCATGCGGAATGCAGTTCGATCAAACTTTGCCGGCGCCTGTT
CGGCCGAAAGCCAATGCCGGTCTACTGAATGCCAACGCGCTTCGACTTCC
CTCCGATCGATGTTCATCTCACAGGGGGGGCATTTGGACGTTCTCAAATA
CGAGCAAGCTAACGGTTGTGGATGGCACGAAGACACTAGCCTTGCCGCGG
CCGGGGCTGGTTTTATCGACGTACTTAGGTGGGCTATCGAAGAGGGCTGC
CCGTTCAACTGGCGCACGTGCTCAGCAGCGTCTGGCGGGGGGCATCTCGA
GATCTTGAAGTTTTTGCGGGGGAAAGGTTGTGCTTGGTCCTCGAGCACCC
TGTTCGTCGGCCGCGCTTGGCGGGTTTTCTGAAATCGTGGAATACGCTTC
TGGAAACGGATGCCCGTTTCCCTCGCGTACGGCGTCCATGGCTGCGATGG
GTGGCCACTTTTCTTTGCTGCGCCGCTGGTTGCGTGGGAACGGATGCCCT
TGGGATGAGCGGACTGCCTTGGCGTGTTGCAAAGAGGGCAACCTTG
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Coding sequence (CDS) from alignment at C-linearis_contig9:2683894..2684689-

>mRNA_C-linearis_contig9.16674.1 ID=mRNA_C-linearis_contig9.16674.1|Name=mRNA_C-linearis_contig9.16674.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig9:2683894..2684689- (Chordaria linearis ClinC8C monoicous)
CAGACTGCGCGGGCGGGGGCGTTGGATACTTTGCGGTGGGCAAGACAAGC
CGGATGTCTCTTTACGGAGGAAGCATGCGCCTACGCCGCGCGGGGAGGGC
ATCTGAGCGTGCTGCGATACCTGAGGGAAATTGGATGCCCTTGGAATGAG
CGGACGTGCCTCTTGGCTGCAACGCAGACTGCGCGGGCGGGGGCGTTGGA
TACTTTGCGGTGGGCAAGACAAGCCGGATGTCTCTTTACGGAGGAAGCAT
GCGCCTACGCCGCGCGGGGAGGGCATCTGAGCGTGCTGCGATACCTGAGG
GAAATTGGATGCCCTTGGAATGAGCGGACGTGCCTCTTGGCTGCAACGGG
GGGGCATTTGGACGTTCTCAAATACGAGCAAGCTAACGGTTGTGGATGGC
ACGAAGACACTAGCCTTGCCGCGGCCGGGGCTGGTTTTATCGACGTACTT
AGGTGGGCTATCGAAGAGGGCTGCCCGTTCAACTGGCGCACGTGCTCAGC
AGCGTCTGGCGGGGGGCATCTCGAGATCTTGAAGTTTTTGCGGGGGAAAG
GTTGTGCTTGGTCCTCGAGCACCCTGTTCGTCGGCCGCGCTTGGCGGGTT
TTCTGAGGGGGGCATTTGGACGTTCTCAAATACGAGCAAGCTAACGGTTG
TGGATGGCACGAAGACACTAGCCTTGCCGCGGCCGGGGCTGGTTTTATCG
ACGTACTTAGGTGGGCTATCGAAGAGGGCTGCCCGTTCAACTGGCGCACG
TGCTCAGCAGCGTCTGGCGGGGGGCATCTCGAGATCTTGAAGTTTTTGCG
GGGGAAAGGTTGTGCTTGGTCCTCGAGCACCCTGTTCGTCGGCCGCGCTT
GGCGGGTTTTCTGA
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