mRNA_C-linearis_contig9.16671.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16671.1 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 2.980e-151 Identity = 418/971 (43.05%), Postives = 493/971 (50.77%), Query Frame = 2
Query: 152 MATFCESWDSNWMDGSCAGLDENIDDHVVDAHAFEAALEPLPAWDGVEYSAIGGNTTGRSSKNHATAVPPRRQHDWANSTPHTFKQDHGKIFDRLDLQTLSLDHDEEGGDITGADSSVLRKSMLAGNIDVEVEKPL-QSWS---TRSPAPKQQGSSPEPERTLTHLIRLHRTGSVVVERTASPRAPSA---GAAAVGAPESGYGGF-YAEEERFWLERCPPAEPVAADRRDKETKAAVAAQWKTPLASSSPGTQAAVAVGRAANYDYFSAEAAYRLSPRPQTAADPRYSNRENDGFVREGRGGNTTPSSQRRPSFDRQGGXXXGFQDADNPPQPNPQPSR---PPRRQVARDRRGGHAGEIGRNRNTXXXXXXXXXXXXXSLRDAEAILHGVLEAVEGGLST---------IEDPSPSRRAPGEDHVSALLQRVAEPCRGETPVRTSSKRGIRKQRNHGGS---PSPVTINNQVRRHRKSTDSSDDASNHAPSSSSGSHSPLRVPPLQLRSSESARRKGTTMRDLSSQQEYDHERGVME-------AGEEEDAGG------DESAVRVAELSRRIASRCLQLEQECSTREQSQTRLFQEQLRGVRQTAQQVARRMIRDERSRASQSLAEAQKKFEEREAAALAKXXXMEDGRKAERETLAANLATAKSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAEEKGGLRRAAEDALRRVVDAKTRAEEEAALKAQATQDALNAQVRSWKAKAEAAGKRATEERDRGRRFEAGAQGALAQEVEKARESQERTIRELRTKSEADRAAHAEELERIKEEHRANILRVHQDKKRLSEAARRQWEQEMEEVRADAAARIEDSAARSAAERAEALRRLRLAHDVEMRKAGRDILRLEREARRCQRQ-EPAGVVARSKSGSSSLSPLRPGAYSPKPLPEEAAVATSCLDGVEAEGGFQALSSPGFGNSKAAENPGE 2953
M TFCESWDSNWMDGSC G N DD A AFEAAL+PLPAWDG+ YS GN V RQ D S + H + D LDL +++ DE GD T SS LR + LAG+ D + P+ Q+WS + SP PK +G E LTH+IRLHRTGSVVVER P A A A G + + YAEEERFW RCPP E AV Q P AS + A GRAANYDYF+AEAA+ L+ P + P N GRG + F+ + AD Q N PP R+ AR A I T SLRDAE++L GVLE+VE ST ED + P + S L Q VA R E +RG HGGS SP Q RH D N SPL + + RS +R +G R S Q + +R +E A EE ESA RVAELSRRIA RC SQTRLFQEQLR VR AQQVARR I DER R Q L E Q++FEE+E +AK E+ K ERE+L AN A AKSE+ AEEKGGLRRAAEDALRR ++ RA EEAA KAQA QD+L+AQVRSWKAK E A +RA EER++ + EAG +GALAQE ER++EEHRA +LRVHQDKK L EAARR+WE+EM+E+R +A A+ ED+A R+ AER+EALRRLRLAHD EMRKAGRDILRLEREARRCQ+Q EP+G+ RSK +S+LSPL G+YS +PL E A A SCLDGVEAE G Q S NPG+
Sbjct: 1 MGTFCESWDSNWMDGSCGGFQNNADDSDGGADAFEAALQPLPAWDGLAYSTNRGNAEN-------DIVWGTRQSDRDRSAASPSPEHHPGMLDDLDLGAVNVGPDE-AGDCTDNVSSTLRTTKLAGDPD-GMHPPIGQAWSETRSTSPEPKPKGHDLETGDNLTHVIRLHRTGSVVVERKGKPNARGGIIGDAGAFGPRQHAAEQYSYAEEERFWQARCPP-----------EADNAVVVQRTAPTAS----PRVTKANGRAANYDYFAAEAAH-LAGSPAGKSVPPGGNSS-----LRGRGPGQPTGRRTTTRFEEK---------ADACVQENCATQGTHVPPPRRTARKGCSARAKAI-----TERKRDKAQRRRLQSLRDAESVLRGVLESVEDAPSTGEVCRKTAAEEDSYSTMDTPQGERFSVLRQNVANLFRDEA----HEERGESSTGKHGGSMGGTSPSKYRAQTSRHY-------DGDNWP--------SPLGIRRVGNRSG--SRERGAMARGTSQQVDQHEQRQCIEDERAEGLAHSEEXXXXXXGXXXQESAGRVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKERGLVAKLNLAEESWKVERESLNANTAAAKSEVEKCRRQARAAAEAGMNASREALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREEAAKKAQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQEPSGMAPRSKQDNSTLSPLPRGSYSLRPLVSETAGARSCLDGVEAEMGSQTSPSSVLTTPSINANPGK 906
BLAST of mRNA_C-linearis_contig9.16671.1 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI) HSP 1 Score: 321 bits (822), Expect = 4.910e-94 Identity = 222/409 (54.28%), Postives = 267/409 (65.28%), Query Frame = 2
Query: 1664 QQEYDHER-GVMEAGEEEDAGGD-------ESAVRVAELSRRIASRCLQLEQECSTREQSQTRLFQEQLRGVRQTAQQVARRMIRDERSRASQSLAEAQKKFEEREAAALAKXXXMEDGRKAERETLAANLATAKSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAEEKGGLRRAAEDALRRVVDAKTRAEEEAALKAQATQDALNAQVRSWKAKAEAAGKRATEERDRGRRFEAGAQGALAQEVEKARESQERTIRELRTKSEADRAAHAEELERIKEEHRANILRVHQDKKRLSEAARRQWEQEMEEVRADAAARIEDSAARSAAERAEALRRLRLAHDVEMRKAGRDILRLEREARRCQRQ-EPAGVVARSKSGSSSLSPLRPGAYSPKPLPEEAAVATS 2863
QQ ++ ER G + EEE+ GD ESA RVAELSRRI +SQTRLFQEQLRGVR AQQVARR I DER R Q L E Q++FEE+E +AK E+ KAERE+L+A+ A AK E+ AEEKGGLRRAAEDALRR ++ R EEAA KAQ QD+L+AQ+RSWKAKAE A +RATEER++ R EAG +G LAQEVEKA DRA HAEE+ER++EEHRA +LRVHQDKK L EAARRQWE+EM+E+R +A A+ ED+A R+ AER+EALRRLRLAHD EMRKAGRDILRLEREARR Q+Q EP+G+ RSK +S+LSPL G+YSP+PL E ++ T+
Sbjct: 106 QQCFEDERAGGLAHSEEEEEDGDXXGDNEQESAGRVAELSRRIXXXXXXXXXXXXXXXRSQTRLFQEQLRGVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKEKGLVAKLELAEESWKAERESLSADTAAAKCEVEKCRRQARAAAEAARNTTKEALEKQRLDFQRGWAEEKGGLRRAAEDALRRAMEGNVREREEAATKAQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQEVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRSQQQQEPSGMAPRSKEDNSTLSPLPRGSYSPRPLLSEVSIRTA 514 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16671.1 >prot_C-linearis_contig9.16671.1 ID=prot_C-linearis_contig9.16671.1|Name=mRNA_C-linearis_contig9.16671.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=937bp MATFCESWDSNWMDGSCAGLDENIDDHVVDAHAFEAALEPLPAWDGVEYSback to top mRNA from alignment at C-linearis_contig9:2663305..2671831+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16671.1 ID=mRNA_C-linearis_contig9.16671.1|Name=mRNA_C-linearis_contig9.16671.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8527bp|location=Sequence derived from alignment at C-linearis_contig9:2663305..2671831+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2663305..2671831+ >mRNA_C-linearis_contig9.16671.1 ID=mRNA_C-linearis_contig9.16671.1|Name=mRNA_C-linearis_contig9.16671.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5622bp|location=Sequence derived from alignment at C-linearis_contig9:2663305..2671831+ (Chordaria linearis ClinC8C monoicous)back to top |