mRNA_C-linearis_contig9.16670.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 7.080e-16 Identity = 129/424 (30.42%), Postives = 175/424 (41.27%), Query Frame = 3
Query: 84 REALRGVEERIFDLLSSSCTPMSWADLLHRMLEVAAGKGETVLALKLVEAGAFGHADAMYDPIRNGHVGVVNMLLENGAQPTHRYSEDNTPLHVAAAAGELEIVRLXXXXXXXXXXXXXXXXXXLLVA------------------VQHEHGG-------VVAGPPELTPTFVLVKCTVRWKSPPRAGMWT**E*YSSTGWMWIVVAVCLKQLFTWLRNGTNWAPYICSWRLAPISMRGISWTTHLFI*PPFAGLVLALPLLCSSTAL*STNKMTESKHRYTMLHVRPGLTAMVHR--SWW---TFF*GGNRTAADSVGTI---RDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
R ALRG EERIFDL + +CTP WA L+ LE AAG+G L KLVEAGA A++ +R GH + LLE+GA + E TPL XXXXXXXXXXXXXXXXXX + +G + AG + L++ + G+ ++ ++ + LR G N A + + M I+ T LA+ L + T T + G+ +V W T G AAD++G D + VRKLLANAPADRAWRRR LVLCR+ PD++QL D +L+ AR++GL +EG+FR+IV ++
Sbjct: 7 RGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAE-IGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNK---------VEAMDVLLRAGAN-ARSMSESGHTVLHMAAITRTRT-------EAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSDRIARLE------------------------------ARVLGLVEEGIFRTIVRFI 382
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 5.810e-14 Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 3
Query: 936 ADSVGTIRDVNSA----DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMI-----------STSDGGRLD-WISFMARMIGLQKEGVFRSIVGYV 1256
AD VG ++ +V V +LLANAPADRAWRRRGLLVLCR+ +LRQ+D G D G S R RAK+ T +GG D W S R++ L++EG+FRS+VG++
Sbjct: 302 ADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGG--DTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.860e-13 Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 3
Query: 975 DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMI-----------STSDGGRLD-WISFMARMIGLQKEGVFRSIVGYV 1256
+V V +LLANAPADRAWRRRGLLVLCR+ +LRQ+D G D G S R RAK+ T +GG D W S R++ L+ EG+FRS+VG++
Sbjct: 50 EVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGG--DTRGGLSRRTRSRAKLARSDAVGAGCRSGTPEGGTGDEWRSASRRVVELE-EGIFRSVVGFL 152
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 2.150e-13 Identity = 56/128 (43.75%), Postives = 75/128 (58.59%), Query Frame = 3
Query: 921 GNRTAADSVGTI---RDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQ--LDVAGVDSERAPCRAKM-----------ISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
GN+ A D +G D + DV RVR+LLANAPADRAWRRRG L++CR+ PD V R+ SG +VA R RAKM + S GG +W ++++I LQ+EG+FR+IV Y+
Sbjct: 280 GNK-AVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVA----RRTRSRAKMARARGIAGESTVDESTGG--NWAVVVSKVISLQEEGIFRTIVEYL 400
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 4.980e-11 Identity = 51/111 (45.95%), Postives = 60/111 (54.05%), Query Frame = 3
Query: 930 TAADSVGTIR--DVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
TAADS+GT R + D R R LLA APADRAWRRRGLLVLCR+HPD +QL D +G VAGV GL++ GVFR+IV Y+
Sbjct: 312 TAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQLGGDLAGL--VAGVG-----------------------------GLEEVGVFRTIVLYL 391
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 6.510e-10 Identity = 45/112 (40.18%), Postives = 58/112 (51.79%), Query Frame = 3
Query: 927 RTAADSVGTIR--DVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
+TAAD +GT R D R R LL APADRAWRRRGLLVLC ++PD +QL D +G +D R++GL++ GVFR+IV Y+
Sbjct: 307 KTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQLGGDLAGLVD-------------------------------RVLGLEEVGVFRTIVLYL 387
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 9.240e-10 Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 3
Query: 975 DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMIS-------TSDGGRLD------WISFMARMIGLQKEGVFRSIVGYV 1256
+V RV KLL AP DRAWRRRG+LVLCR+HP+ + LRQ+ S + + R+ R K++ + +G D W + + R++GL EG+FR+IVGY+
Sbjct: 296 NVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRS--RTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLD-EGIFRTIVGYL 399
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.440e-9 Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 3
Query: 921 GNRTAADSVGTIRDVNS------ADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCR--AKMISTSDGG---------RLDWISFMARMIGLQKEGVFRSIVGYV*IGRR 1271
G+ T AD +GT DV S AD R+ ++LA APADR+WRRR LVL RS P V++ ++ V S A+ GG +D + R++GL+ +G+FR +VG++ GR
Sbjct: 385 GDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFLKRGRN 518
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 1.480e-9 Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 3
Query: 933 AADSVGTIRDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTS---DGG----------RLDWISFMARMIGLQKEGVFRSIVGYV 1256
A+ S T+ + D R+R++LA APADR+WRRRGLLVL RS P VQ+ S + + S + C AK+ S GG +DW + R+I L+ +G+FR +VG+V
Sbjct: 263 ASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSG---SSIGSSKG-CFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGFV 379
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.530e-9 Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query: 530 GEMYGSLEIAAESGHVDVMRVILQHGVDVDSCGSLFETALHVAAKWDKLGAIHLLVEAGANIHARNFMDN---TPLHLAA 760
G+ + +L +AA GHV+VM+ +++HGVDVD S TALH AA D +GAI +L+EAGA+I A+ D TPLH+A+
Sbjct: 174 GKAFSALGLAARGGHVEVMQALIRHGVDVDGPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGARYTPLHVAS 253 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16670.1 >prot_C-linearis_contig9.16670.1 ID=prot_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp MATLAVRREALRGVEERIFDLLSSSCTPMSWADLLHRMLEVAAGKGETVLback to top mRNA from alignment at C-linearis_contig9:2661169..2663192- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16670.1 ID=mRNA_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2024bp|location=Sequence derived from alignment at C-linearis_contig9:2661169..2663192- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2661169..2663192- >mRNA_C-linearis_contig9.16670.1 ID=mRNA_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig9:2661169..2663192- (Chordaria linearis ClinC8C monoicous)back to top |