mRNA_C-linearis_contig9.16670.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16670.1
Unique NamemRNA_C-linearis_contig9.16670.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.080e-16
Identity = 129/424 (30.42%), Postives = 175/424 (41.27%), Query Frame = 3
Query:   84 REALRGVEERIFDLLSSSCTPMSWADLLHRMLEVAAGKGETVLALKLVEAGAFGHADAMYDPIRNGHVGVVNMLLENGAQPTHRYSEDNTPLHVAAAAGELEIVRLXXXXXXXXXXXXXXXXXXLLVA------------------VQHEHGG-------VVAGPPELTPTFVLVKCTVRWKSPPRAGMWT**E*YSSTGWMWIVVAVCLKQLFTWLRNGTNWAPYICSWRLAPISMRGISWTTHLFI*PPFAGLVLALPLLCSSTAL*STNKMTESKHRYTMLHVRPGLTAMVHR--SWW---TFF*GGNRTAADSVGTI---RDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
            R ALRG EERIFDL + +CTP  WA L+   LE AAG+G   L  KLVEAGA     A++  +R GH  +   LLE+GA  +    E  TPL              XXXXXXXXXXXXXXXXXX                      +   +G        + AG   +     L++      +    G+       ++           ++ +   LR G N A  +       + M  I+ T             LA+ L   +     T   T           + G+  +V     W    T   G    AAD++G      D    +   VRKLLANAPADRAWRRR  LVLCR+ PD++QL  D   +L+                              AR++GL +EG+FR+IV ++
Sbjct:    7 RGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAE-IGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNK---------VEAMDVLLRAGAN-ARSMSESGHTVLHMAAITRTRT-------EAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRARPDKMQLSSDRIARLE------------------------------ARVLGLVEEGIFRTIVRFI 382          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.810e-14
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  936 ADSVGTIRDVNSA----DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMI-----------STSDGGRLD-WISFMARMIGLQKEGVFRSIVGYV 1256
            AD VG   ++       +V  V +LLANAPADRAWRRRGLLVLCR+     +LRQ+D G  D  G  S R   RAK+             T +GG  D W S   R++ L++EG+FRS+VG++
Sbjct:  302 ADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGG--DTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.860e-13
Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  975 DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMI-----------STSDGGRLD-WISFMARMIGLQKEGVFRSIVGYV 1256
            +V  V +LLANAPADRAWRRRGLLVLCR+     +LRQ+D G  D  G  S R   RAK+             T +GG  D W S   R++ L+ EG+FRS+VG++
Sbjct:   50 EVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGG--DTRGGLSRRTRSRAKLARSDAVGAGCRSGTPEGGTGDEWRSASRRVVELE-EGIFRSVVGFL 152          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.150e-13
Identity = 56/128 (43.75%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  921 GNRTAADSVGTI---RDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQ--LDVAGVDSERAPCRAKM-----------ISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
            GN+ A D +G      D  + DV RVR+LLANAPADRAWRRRG L++CR+ PD V  R+  SG    +VA     R   RAKM           +  S GG  +W   ++++I LQ+EG+FR+IV Y+
Sbjct:  280 GNK-AVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVA----RRTRSRAKMARARGIAGESTVDESTGG--NWAVVVSKVISLQEEGIFRTIVEYL 400          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.980e-11
Identity = 51/111 (45.95%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  930 TAADSVGTIR--DVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
            TAADS+GT R    +  D  R R LLA APADRAWRRRGLLVLCR+HPD +QL  D +G   VAGV                              GL++ GVFR+IV Y+
Sbjct:  312 TAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQLGGDLAGL--VAGVG-----------------------------GLEEVGVFRTIVLYL 391          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 6.510e-10
Identity = 45/112 (40.18%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  927 RTAADSVGTIR--DVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTSDGGRLDWISFMARMIGLQKEGVFRSIVGYV 1256
            +TAAD +GT R       D  R R LL  APADRAWRRRGLLVLC ++PD +QL  D +G +D                               R++GL++ GVFR+IV Y+
Sbjct:  307 KTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQLGGDLAGLVD-------------------------------RVLGLEEVGVFRTIVLYL 387          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.240e-10
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  975 DVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMIS-------TSDGGRLD------WISFMARMIGLQKEGVFRSIVGYV 1256
            +V RV KLL  AP DRAWRRRG+LVLCR+HP+ + LRQ+ S   +   +   R+  R K++        + +G   D      W + + R++GL  EG+FR+IVGY+
Sbjct:  296 NVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRS--RTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLD-EGIFRTIVGYL 399          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-9
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  921 GNRTAADSVGTIRDVNS------ADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCR--AKMISTSDGG---------RLDWISFMARMIGLQKEGVFRSIVGYV*IGRR 1271
            G+ T AD +GT  DV S      AD  R+ ++LA APADR+WRRR  LVL RS P  V++  ++     V    S        A+      GG          +D    + R++GL+ +G+FR +VG++  GR 
Sbjct:  385 GDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFLKRGRN 518          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-9
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  933 AADSVGTIRDVNSADVARVRKLLANAPADRAWRRRGLLVLCRSHPDEVQLRQDDSGQLDVAGVDSERAPCRAKMISTS---DGG----------RLDWISFMARMIGLQKEGVFRSIVGYV 1256
            A+ S  T+ +    D  R+R++LA APADR+WRRRGLLVL RS P  VQ+    S     + + S +  C AK+   S    GG           +DW   + R+I L+ +G+FR +VG+V
Sbjct:  263 ASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSG---SSIGSSKG-CFAKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGFV 379          
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.530e-9
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  530 GEMYGSLEIAAESGHVDVMRVILQHGVDVDSCGSLFETALHVAAKWDKLGAIHLLVEAGANIHARNFMDN---TPLHLAA 760
            G+ + +L +AA  GHV+VM+ +++HGVDVD   S   TALH AA  D +GAI +L+EAGA+I A+   D    TPLH+A+
Sbjct:  174 GKAFSALGLAARGGHVEVMQALIRHGVDVDGPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGARYTPLHVAS 253          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKL4_ECTSI7.080e-1630.42Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7FYD0_ECTSI5.810e-1443.90Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KNN1_9PHAE1.860e-1347.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXK5_9PHAE2.150e-1343.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI4.980e-1145.95Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G137_ECTSI6.510e-1040.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G981_ECTSI9.240e-1041.12Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LD22_ECTSI1.440e-934.33MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LTL5_ECTSI1.480e-938.02MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7G751_ECTSI1.530e-948.75Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2661169..2663192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FKL4
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size1531
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16670.1prot_C-linearis_contig9.16670.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2662609..2663130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930752.968953-UTR-C-linearis_contig9:2661168..26614361622930752.968953-UTR-C-linearis_contig9:2661168..2661436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2661169..2661436 -
1690881231.6279666-UTR-C-linearis_contig9:2661168..26614361690881231.6279666-UTR-C-linearis_contig9:2661168..2661436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2661169..2661436 -
1622930752.9921365-UTR-C-linearis_contig9:2661929..26626081622930752.9921365-UTR-C-linearis_contig9:2661929..2662608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2661930..2662608 -
1690881231.6396446-UTR-C-linearis_contig9:2661929..26626081690881231.6396446-UTR-C-linearis_contig9:2661929..2662608Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2661930..2662608 -
1622930753.0325139-UTR-C-linearis_contig9:2663130..26631921622930753.0325139-UTR-C-linearis_contig9:2663130..2663192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2663131..2663192 -
1690881231.6613445-UTR-C-linearis_contig9:2663130..26631921690881231.6613445-UTR-C-linearis_contig9:2663130..2663192Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 2663131..2663192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930753.0117407-CDS-C-linearis_contig9:2662608..26631301622930753.0117407-CDS-C-linearis_contig9:2662608..2663130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2662609..2663130 -
1690881231.6495636-CDS-C-linearis_contig9:2662608..26631301690881231.6495636-CDS-C-linearis_contig9:2662608..2663130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2662609..2663130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16670.1

>prot_C-linearis_contig9.16670.1 ID=prot_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
MATLAVRREALRGVEERIFDLLSSSCTPMSWADLLHRMLEVAAGKGETVL
ALKLVEAGAFGHADAMYDPIRNGHVGVVNMLLENGAQPTHRYSEDNTPLH
VAAAAGELEIVRLLLLWGAEKDALNQRDRTPLLVAVQHEHGGVVAGPPEL
TPTFVLVKCTVRWKSPPRAGMWT*
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mRNA from alignment at C-linearis_contig9:2661169..2663192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16670.1 ID=mRNA_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2024bp|location=Sequence derived from alignment at C-linearis_contig9:2661169..2663192- (Chordaria linearis ClinC8C monoicous)
CGGAGGCAGCGGGCGGGTGTACACCATAGCAAACTAAACACAAGGCTATT GTTCAGCGTGAGATGGCTACCTTGGCCGTCCGACGGGAAGCACTGCGAGG TGTGGAGGAGCGAATTTTCGACCTTCTCTCGTCGAGCTGCACGCCAATGT CGTGGGCCGATCTTTTGCATCGGATGCTCGAGGTGGCCGCCGGCAAGGGA GAGACAGTCCTGGCACTGAAGCTGGTGGAGGCAGGGGCATTCGGGCATGC GGATGCGATGTATGATCCTATCAGGAATGGTCACGTCGGTGTTGTGAACA TGTTACTTGAGAACGGAGCACAGCCAACCCACCGCTACTCGGAAGACAAC ACCCCTCTCCACGTTGCTGCGGCAGCAGGCGAACTCGAGATAGTGCGGCT GCTGCTGCTCTGGGGGGCTGAGAAGGACGCGTTGAACCAGCGAGACCGTA CGCCTCTTCTTGTGGCCGTACAGCACGAACATGGTGGAGTGGTGGCTGGG CCGCCGGAGCTAACCCCAACGTTCGTGTTGGTGAAATGTACGGTTCGTTG GAAATCGCCGCCGAGAGCGGGCATGTGGACGTGATGAGAGTGATACTCCA GCACGGGGTGGATGTGGATAGTTGTGGCAGTCTGTTTGAAACAGCTCTTC ACGTGGCTGCGAAATGGGACAAACTGGGCGCCATACATTTGCTCGTGGAG GCTGGCGCCAATATCCATGCGCGGAATTTCATGGACAACACACCTCTTCA TCTAGCCGCCTTTCGCCGGCCTGGTGTTGGCGCTGCCGCTGCTCTGCTCG AGCACGGCGCTATAATCAACGAACAAGATGACAGAAAGCAAACACCGTTA CACCATGCTGCATGTGCGGCCGGGCTTGACGGCGATGGTTCATCGGAGCT GGTGGACCTTCTTCTGAGGTGGGAACCGAACGGCCGCAGATAGTGTGGGC ACCATCCGCGACGTTAATTCAGCGGACGTGGCGCGCGTGCGCAAGCTATT GGCGAATGCCCCGGCAGATAGGGCGTGGCGTCGCCGAGGGTTGCTGGTCT TGTGCCGTTCCCACCCCGACGAGGTGCAGCTGAGGCAGGACGACAGCGGC CAGTTGGACGTTGCTGGTGTTGATTCTGAAAGAGCACCCTGCCGTGCAAA AATGATCAGCACATCAGATGGCGGCCGTTTGGACTGGATTAGCTTCATGG CGAGGATGATCGGATTGCAAAAGGAGGGGGTATTCAGGTCCATCGTGGGG TATGTCTAAATAGGCGAGTCGCTTCATTTTTTTGTTCTGGCTGGGGAGCC CGTTTGTTTTTTCACCGCGTCCAACCGATATTTGTGTCTTTTCAGCTCTC AAGGTTTATGATTGCTTTATCGGAGCTATTCTGAGGTGACCTTTCGGAAG TTTCTATTGAGTGTCACAATCGGGAGGGCAACACGCGCAGGTTCTGCCAA CCTATTCGAAAGTTGATATTTCGGTCATCGGTGTCGCTCCCTTGGGTTTG CGTGTCGCATACATCGGCATTCGACAAACAATTAGTCACCATTCTGCACG CCTAACTAAACTCTCGGGCCGTACGTGGCTCAATTCATCGCTACCTTCTT GTCGCCCACATTTTTGTGTGGCGGAAATACGCTTGTTGAAGCGCTGGCTC CCGATCTGATCGTTGTCAATCACTTATAGTCAAACAGCATCCACCACCGA CCAGGACCGCTCTTCGCCCCTTTTCCCGCCGATGTTTTGCCCTCACCTAA CCACAGGACGGAGGACTAGCCCTGGTTAGATGGGCGAGTACACGGGGGGT GGATGTGTTCTGGTGGACGTGCACTTATCAGGGGGGGGGGTAGCACCCGT CGAGACACTCTATTGGTAGATTCGTGTGACTCGGCTCGAGTATTGGCATT TAGGATATGCCCATATGTGATGACTAGCTGCACGCCCGTCTGCCAACATC AGCACTTTTTTTCATGTCATCAGCCCGAAGGATAGATACTGCAGGGGTTT GATTGGCTAAAAACGAAGAATTTG
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Coding sequence (CDS) from alignment at C-linearis_contig9:2661169..2663192-

>mRNA_C-linearis_contig9.16670.1 ID=mRNA_C-linearis_contig9.16670.1|Name=mRNA_C-linearis_contig9.16670.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig9:2661169..2663192- (Chordaria linearis ClinC8C monoicous)
ATGGCTACCTTGGCCGTCCGACGGGAAGCACTGCGAGGTGTGGAGGAGCG
AATTTTCGACCTTCTCTCGTCGAGCTGCACGCCAATGTCGTGGGCCGATC
TTTTGCATCGGATGCTCGAGGTGGCCGCCGGCAAGGGAGAGACAGTCCTG
GCACTGAAGCTGGTGGAGGCAGGGGCATTCGGGCATGCGGATGCGATGTA
TGATCCTATCAGGAATGGTCACGTCGGTGTTGTGAACATGTTACTTGAGA
ACGGAGCACAGCCAACCCACCGCTACTCGGAAGACAACACCCCTCTCCAC
GTTGCTGCGGCAGCAGGCGAACTCGAGATAGTGCGGCTGCTGCTGCTCTG
GGGGGCTGAGAAGGACGCGTTGAACCAGCGAGACCGTACGCCTCTTCTTG
TGGCCGTACAGCACGAACATGGTGGAGTGGTGGCTGGGCCGCCGGAGCTA
ACCCCAACGTTCGTGTTGGTGAAATGTACGGTTCGTTGGAAATCGCCGCC
GAGAGCGGGCATGTGGACGTGAATGGCTACCTTGGCCGTCCGACGGGAAG
CACTGCGAGGTGTGGAGGAGCGAATTTTCGACCTTCTCTCGTCGAGCTGC
ACGCCAATGTCGTGGGCCGATCTTTTGCATCGGATGCTCGAGGTGGCCGC
CGGCAAGGGAGAGACAGTCCTGGCACTGAAGCTGGTGGAGGCAGGGGCAT
TCGGGCATGCGGATGCGATGTATGATCCTATCAGGAATGGTCACGTCGGT
GTTGTGAACATGTTACTTGAGAACGGAGCACAGCCAACCCACCGCTACTC
GGAAGACAACACCCCTCTCCACGTTGCTGCGGCAGCAGGCGAACTCGAGA
TAGTGCGGCTGCTGCTGCTCTGGGGGGCTGAGAAGGACGCGTTGAACCAG
CGAGACCGTACGCCTCTTCTTGTGGCCGTACAGCACGAACATGGTGGAGT
GGTGGCTGGGCCGCCGGAGCTAACCCCAACGTTCGTGTTGGTGAAATGTA
CGGTTCGTTGGAAATCGCCGCCGAGAGCGGGCATGTGGACGTGA
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