mRNA_C-linearis_contig9.16667.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 6.030e-15 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 214 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 286
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 6.660e-15 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 133 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 205
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 8.510e-15 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L +P EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 169 IQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 241
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.130e-14 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ AL RAAPTDRAREI SNEF Y R
Sbjct: 161 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHALL-RAAPTDRAREIQSNEFGYATRR 233
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.510e-14 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 393 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 465
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.670e-14 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 463 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 535
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.730e-14 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ P+GG+E++ M YAR R SQG+R F RAAPTDRAREI SNEF Y R
Sbjct: 400 IQLEKFMESLEHLPQEAVPPTRDSPYGGQEARNMAYARTRCSQGQRG-RTFLRAAPTDRAREIPSNEFVYATRR 472
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5K4V8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V8_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.900e-14 Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL+ FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SN+F Y R
Sbjct: 292 IQLENFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNDFVYATRR 364
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.460e-14 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 874 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 946
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.560e-14 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 2245 LQLDRFMEPLGQLPPEAVPPTQRDPFGGRESQEMGYARVRSSQGKRSPALFFRAAPTDRAREIGSNEFAYTATR 2466
+QL++FME L LP EAVPPT+ +P+GG+E++ M YAR RSSQG+ A F RAAPTDRAREI SNEF Y R
Sbjct: 917 IQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHA-FLRAAPTDRAREIPSNEFVYATRR 989 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16667.1 >prot_C-linearis_contig9.16667.1 ID=prot_C-linearis_contig9.16667.1|Name=mRNA_C-linearis_contig9.16667.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=337bp MWERSFSPMASSSWQPWTTRRSIWRPDFWPRLSPPSPARRRTSAGGILWRback to top mRNA from alignment at C-linearis_contig9:2643746..2646630+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16667.1 ID=mRNA_C-linearis_contig9.16667.1|Name=mRNA_C-linearis_contig9.16667.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2885bp|location=Sequence derived from alignment at C-linearis_contig9:2643746..2646630+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2643746..2646630+ >mRNA_C-linearis_contig9.16667.1 ID=mRNA_C-linearis_contig9.16667.1|Name=mRNA_C-linearis_contig9.16667.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at C-linearis_contig9:2643746..2646630+ (Chordaria linearis ClinC8C monoicous)back to top |