mRNA_C-linearis_contig9.16655.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI) HSP 1 Score: 609 bits (1570), Expect = 1.780e-211 Identity = 368/560 (65.71%), Postives = 402/560 (71.79%), Query Frame = 1
Query: 70 MFLRGCKEPLEQYRECLMKNLKDWNGRGLDRGKLAEVKMHQLGQMNIRRFDHQKLIMDRIRHLSDIPSMPRYSAGKVNTAELEAAVHVAPTSADRDIGKXXXXXXXXXMLLSNSSCSGXXXAASIGASSGNPSDEPTSADEAKGKDRHRRSSTRHGIGVKGGRRGSMAIDKSWEAINKARVQTDGGVKQKQLNNIRRRKSNVGVQPSELKPFNPSCFALVGKRRA--DTSTSGQKHATAKTAATGGGNRRESISLNNPDKTRQAKIDAAKANRQRAMEYGNSALKATTREGHLKDLKKQASNIASSILADFVDTIGCDRATLMFVDTPSQEFFFFDGNVRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTSFSALVEAELEWAKAAGRRRSTGGGSVDGGNALSTAAEXXXXXXXXXXXXEARRQSDATATEA--------RRGSLGGGRRGSTEFGGDA-----AAPEISNRRGSGTSKADVEKLKRRTDYGKE 1704
MFLRGC+EPLEQYRECLMKNLKDW+GRGL R KL+ VK+HQLGQMNI RFDHQKLIMDRIRHLSDIPSM RYS GK N AE+EAAVHVAP + +LS S S A + S + S E T K K HRR STRHG+GVKGGRRGS+AIDK+WEAINK+R + DGGVKQKQL+ IRRR SNVG QP ELKPFNP+ FA + + D+S G K ++ A+ G RRES+S N DK RQA+ID AKA RQRA+EYGNSALKATTREG LKDLKKQ ILADFV TIGCDRATLMFVDTP+QE FFFDGN+RIAFPLRKGIAGH A TGMG +VNDPY+NE FNRQ+DKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDG DF+E DA VM MC VKVA ALDTSF+ALV AE EWAKAAGRR XXXXXXXXXXXX RRGSLGG RRGS G P+ISNRRGSGTSKADVEKLKRRT+YGKE
Sbjct: 1 MFLRGCREPLEQYRECLMKNLKDWHGRGLVRQKLSAVKIHQLGQMNITRFDHQKLIMDRIRHLSDIPSMARYSVGKANVAEVEAAVHVAPRR--KGSSSNTGSSNNVNRVLSGDSVSSGSLAENASQSDASMS-EDTGEGGKKSKGHHRRRSTRHGLGVKGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELKPFNPAEFAREQNQASSNDSSLVGSKESSDTNGASKGAGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQ-------ILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNERFNRQVDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGEDFSEHDAGVMEMCAVKVALALDTSFAALVSAENEWAKAAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGSLGG-RRGSATLSGLGDDGLQEVPQISNRRGSGTSKADVEKLKRRTEYGKE 549
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A835ZCA7_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA7_9STRA) HSP 1 Score: 264 bits (675), Expect = 7.750e-78 Identity = 205/579 (35.41%), Postives = 281/579 (48.53%), Query Frame = 1
Query: 52 DLVDPGMFLRGCKEPLEQYRECLMKNLKDWNGRGLDRGKLAEVKMHQLGQMNIRRFDHQKLIMDRIRHL-------------SDIPSMPRYSAGKVNTAELEAAVHVAPTSADRDIGKXXXXXXXXXMLLSNSSCSGXXXAASIGASSGNPSDEPTSADEAKGKDRHRRSSTRHGIGVKGGRRGSMAIDKSWEAINKARVQTDGGVKQKQLNNIRRRKS-----NVGVQPSELKPF-NPSCFALVGKRRADTSTSGQKHATAKTAATGGGNRRESISLNNPDKTRQAKIDAAKANRQRAMEYGNSALKATTREGHLKDLKKQASNIASSILADFVDTIGCDRATLMFVDTPSQEFFFFDGNVRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTSFSALVEAELEWAKAAGRRRSTGGGSVDGGNALSTAAEXXXXXXXXXXXXEARRQSDATATEARRGSLGGGRRGSTEFGGDAAAPEISNRRGSGTSKA-DVEKLKRRTDYGKEVRDSSVGL 1728
DL+D FL+ LEQYREC M NL +GRGL R KLA+V+MH L MNI R DHQK+IM R++ L SD+P+ +S+ A ++V T + R GK + S+S+ D A G R R + S+ ++W AI AR Q D K K+L+ +R R+S ++ S F NP+ R T T A G G+R +++ P +DAA RQRA EYGN ALK+ T E LK+LK+ ++L DT+ C++AT+MF+D ++ FF+DG+ I FP+ KG+AG+CA TG +VNDPY + FN+ IDK +GFVTRNILCEPI+SR GG ++AVLQM+NK+ G FTEQD+ VM M + V++AL+ F AL+ + EWA RR S G A STA + R D G +G +FG A S GT+ A + + +RR DY VR S++GL
Sbjct: 4 DLIDVRTFLK--PTGLEQYRECFMTNLWGGDGRGLSRRKLAQVQMHHLPDMNITRHDHQKIIMARLKELDRIPAVGDEMTPESDVPATGYHSSHVALLARANSSV-TPQTGSSRAPGKGADGARQTLLRRSSSN------------------------DSANGAGRRSRKGS------------SIDATQTWAAIQTARQQLDKDNKTKRLDQMRSRQSTLIRIDLTKAASRRGTFINPA----TSTPRNATGTEPSVSTAESRAQQGAGHRLSVRAISMP-------VDAAAEARQRAQEYGNKALKSNTLENQLKELKR-------TLLQQLCDTMSCEKATIMFLDQHNEVLFFYDGDTCIRFPMSKGVAGYCATTGERLLVNDPYSDPRFNQAIDKQTGFVTRNILCEPIRSRMGGALLAVLQMINKRGGEGFTEQDSEVMEMAVLNVSEALENRFRALISHQSEWAGTKARRNSAGPA------APSTALQRRRHCIASLRLLTLNRYLDHLKGAPPDGLMG---EQVNQFGYRDGAQGASRLSSKGTADAAEAARARRRKDYADGVRHSAIGL 516
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A6H5JRH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH4_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.930e-55 Identity = 103/151 (68.21%), Postives = 113/151 (74.83%), Query Frame = 1
Query: 790 ATGGGNRRESISLNNPDKTRQAKIDAAKANRQRAMEYGNSALKATTREGHLKDLKKQ------------------ASNIASSILADFVDTIGCDRATLMFVDTPSQEFFFFDGNVRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQI 1188
A+ G RRES+S N DK RQA+ID AKA RQRA+EYGNSALKATTREG LKDLKKQ A + ILADFV TIGCDRATLMFVDTP+QE FFFDGN+RIAFPLRKGIAGH A TGMG +VNDPY+NEHFNRQ+
Sbjct: 3 ASKGAGRRESLSPNVHDKARQARIDEAKAKRQRALEYGNSALKATTREGQLKDLKKQVGQQQTLHGDSICCRSWNARSCVFVILADFVSTIGCDRATLMFVDTPAQELFFFDGNMRIAFPLRKGIAGHVAATGMGLVVNDPYNNEHFNRQV 153
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A7S2LDR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDR6_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.430e-29 Identity = 68/175 (38.86%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 880 RQRAMEYGNSALKATTREGHLKDLKKQASNIASSILADFVDTIGCDRATLMFVDTPSQEFFFFDGN-VRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTSFSALVEAELE 1401
R+ A+ YG SA + E +L L K+A N F TI C+R +++F D E FFFD VR + L GIAG+ A G V+D Y + FN+ +D+ +GF T+++LC PIK+R G ++AV+QM+NKK G FT+ D +M C+ KVA+AL+ + A+ +
Sbjct: 41 RELALHYGESAQRTACAELNLNKLGKRAMN-------SFKKTIACERCSILFCDRDKNELFFFDDKLVRFSLSLELGIAGYVAKHGEIANVSDVYVDSRFNKNLDEQTGFRTKSLLCAPIKNRSGDCIIAVIQMLNKKGGESFTDHDEDLMRNCSFKVAEALELQADVVARAQAD 208
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A7S4D805_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D805_HETAK) HSP 1 Score: 125 bits (315), Expect = 2.770e-29 Identity = 73/187 (39.04%), Postives = 108/187 (57.75%), Query Frame = 1
Query: 850 QAKIDAAKANRQRAMEYGNSALKATTREGHLKDLKKQASNIASSILADFVDTIGCDRATLMFVDTPSQEFFFFD-GNVRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTSFSALVEAELEWA 1407
Q ++ A+ RQ+A +YG++AL+ + +KK I +L F I C+RA+LMFVD +E FFFD + + FP GIAGH TG + D Y + FNR++DK +GF TRNILC PI++ G +VAV+QM+NK+D F+ D ++ C VA+ L + L+EA ++A
Sbjct: 24 QGELTEAQKARQKARDYGDAALRQ-------ERVKKDLLAIRQRVLGRFQQIINCERASLMFVDDRRKEIFFFDESDHQRRFPSSAGIAGHVVSTGERLNIPDAYSDPRFNREMDKLTGFHTRNILCAPIRTYTG-QIVAVVQMLNKRDEDHFSHNDEGIIEACGTDVAEVLAPKYRDLLEAMEDFA 202
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A6H5JRT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT3_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.430e-28 Identity = 92/139 (66.19%), Postives = 99/139 (71.22%), Query Frame = 1
Query: 1327 MAMCTVKVAQALDTSFSALVEAELEWAKAAGRRRSTGGGSVDGGNALSTAAEXXXXXXXXXXXXEARRQSD---ATATEARRGSLGGGRRGSTEFGG---------DAAAPEISNRRGSGTSKADVEKLKRRTDYGKEV 1707
M MC VKVA ALDTSF+ALV AE EWAKAAGRRRS+G GS+D + TAAE XXXXXXXXXXX SD ATA RRGSLGG RRGS G A P+ISNRRGSGTSKADVEKLKRRT+YGKE+
Sbjct: 1 MEMCAVKVALALDTSFAALVAAENEWAKAAGRRRSSGSGSIDDSEPVLTAAEAXXXXXXXXXXXXXXXXSDGADATAGGGRRGSLGG-RRGSATLSGLGDGGLQEVGARVPQISNRRGSGTSKADVEKLKRRTEYGKEL 138
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A2V9K0E4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9K0E4_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 5.150e-17 Identity = 64/165 (38.79%), Postives = 93/165 (56.36%), Query Frame = 1
Query: 976 SSILADFVDT----IGCDRATLMFVDTPSQEFFFFDGN----VRIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTS--FSALVEAEL---EWAKAAGRRRS 1431
S +LA +D + +R TL VD E + I PL KGIAGH A+TG ++D Y + FN ++DK +GF TRNI C PI+S K G ++AVL+++NKK G FT++DA + + + VA AL+ + A++E E E+A A G +RS
Sbjct: 184 SELLARILDVAKSQVEAERGTLFLVDEKKSEMWSLIAQGLEKQEIRLPLGKGIAGHVAETGEIVNISDAYADSRFNTEVDKQTGFRTRNIFCMPIRS-KSGKIIAVLELLNKKKG-SFTDEDADFLLVLSGHVALALENAQLHQAVLEKERMEKEFALARGIQRS 346
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A1G3IAB1_9PROT (Guanylate cyclase n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_58_28 TaxID=1802022 RepID=A0A1G3IAB1_9PROT) HSP 1 Score: 95.9 bits (237), Expect = 5.520e-17 Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 940 LKDLKKQASNIAS--SILADFVDTI----GCDRATLMFVDTPSQEFF--FFDGNVR--IAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTS 1371
L D+ +Q + I + +LA VD +R T+ + S E + F G +R I GIAGH TG+G IVND Y +E FNR +D+ +GF TR +LC PI++ KG +++ V Q +NKK+G +TE D ++ T + A AL ++
Sbjct: 2 LLDVSRQVAGIETVDEVLATLVDITTKETNSERGTIFLNNEQSGELYSRFAQGEIRREIRIMNTSGIAGHVFTTGLGLIVNDAYSDERFNRSVDQQTGFETRQVLCAPIRTAKG-DIIGVAQALNKKEGK-YTEDDLALLEAMTTQAAVALQST 153
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: A0A1G3ITC9_9PROT (Guanylate cyclase n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15 TaxID=1802023 RepID=A0A1G3ITC9_9PROT) HSP 1 Score: 95.5 bits (236), Expect = 7.210e-17 Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query: 1006 IGCDRATLMFVDTPSQEFF--FFDGNVR--IAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTS 1371
+G +R TL D + E + F G R I F +GIAGH TG +V+DPY+N HFNRQ+D+ +GF TRNI+ P+K+ KG ++ V Q +NKK+G F E+D V+ T + AL +S
Sbjct: 30 LGAERTTLFLNDPQTGELYSRFAQGTFRREIRFLNTQGIAGHVFQTGESLLVDDPYNNPHFNRQVDQQTGFTTRNIIAVPVKTVKG-EIIGVAQCLNKKEGA-FGEEDLRVLEAMTSQATVALQSS 153
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Match: UPI001073AAEB (GAF domain-containing protein n=1 Tax=Terasakiella sp. SH-1 TaxID=2560057 RepID=UPI001073AAEB) HSP 1 Score: 89.0 bits (219), Expect = 9.940e-17 Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 1015 DRATLMFVDTPSQEFF--FFDGNV--RIAFPLRKGIAGHCADTGMGFIVNDPYDNEHFNRQIDKDSGFVTRNILCEPIKSRKGGNVVAVLQMVNKKDGHDFTEQDAVVMAMCTVKVAQALDTSF 1374
+R TL D + E F GN+ I GIAGH TG I++D YD+E FN++ID ++GF TRNILC PI++ +G +++ V QM+NK+ G F++ D + T+KVA L T++
Sbjct: 47 ERGTLFLYDDTTHELFSRIAMGNLTEEIRIAPDTGIAGHVFSTGESLIIDDAYDDERFNKEIDANTGFTTRNILCVPIQTLEG-DIIGVAQMLNKQGG-PFSKTDQTHLENMTMKVAHELTTAY 168 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16655.1 >prot_C-linearis_contig9.16655.1 ID=prot_C-linearis_contig9.16655.1|Name=mRNA_C-linearis_contig9.16655.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=568bp MVMEAEADLVDPGMFLRGCKEPLEQYRECLMKNLKDWNGRGLDRGKLAEVback to top mRNA from alignment at C-linearis_contig9:2408040..2414886- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16655.1 ID=mRNA_C-linearis_contig9.16655.1|Name=mRNA_C-linearis_contig9.16655.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6847bp|location=Sequence derived from alignment at C-linearis_contig9:2408040..2414886- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2408040..2414886- >mRNA_C-linearis_contig9.16655.1 ID=mRNA_C-linearis_contig9.16655.1|Name=mRNA_C-linearis_contig9.16655.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at C-linearis_contig9:2408040..2414886- (Chordaria linearis ClinC8C monoicous)back to top |