mRNA_C-linearis_contig9.16641.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig9.16641.1 vs. uniprot
Match: D7FYC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC8_ECTSI) HSP 1 Score: 264 bits (675), Expect = 6.890e-70 Identity = 413/985 (41.93%), Postives = 489/985 (49.64%), Query Frame = 1
Query: 481 EVKKERSALVQGEKHTSKNANGEFTAPQRLRRFRPV---------ATPPVSPY-SPSRKTAGL---SFSQGEDSSSLVSTTIGSCSLGSDHRHRGDNSASRSRRTPRLSREGSGNPVLEGEAQRLEALKRRRFMELQQMLAFQLRSLARQERDRLMAETARAREATAEAKRSKMLEAADRVRIARERSGQEREKEVERQAAVKXXXXXXXXXXXXXXXXXXXXQAEVAAERRAELAAQKAALLQARIDRGVRVRRAQRLRNERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEIAARERELREEEVAELARERQEAARRKVEREAKRRAEEMEAKFLRAKEIALAREIRKQQETAKTRAERQKKEEHRKRMAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKERIKATRGQLSSQTAMQRKNLQGHFEALKDQFRGCDVRYGKIAAAVSAA------------------TTARGDSGPTTPATRHSNTATPRLGSPN-PRRAAKPAFRASSQSRSSYDSPR--------------EEGAEADSRPVPQSQMESSCYLSGASTASSLSL-----PHGGVDGRRRSPPRTKGATTPGK-TPRKLRKAASG--GGSRSGD----------VADLRKRYVYDDRNGNAV----STRVAKKTTT-----TPRNRKTRSEQA--IAAGHRGDGESGTP--AKHRGKEATRSTASTTTETGREIVAVSCDA-DDGYDEDKVLTATVTLLSXXXXXXXXXXXXXXXX--------------ATSDTEVLRARYDRELMAILEEEQAAESAREKALAAANARAKAAQARATYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------TVAAREEAQLKRELARERREASKRVMRVSEEYEKALEKL 3081
+VKKERS LV+ KH F +PV TPPVSPY SP RK S + G+ SS S G GDN +S S G GNPVLE EA RLEAL+RRRF+ELQQMLAF+LR LAR+ERDR +AE ARAREA AE KR+KM EAADR R+ARERS Q+REK ER+AA + QA++AAERRAELAAQKAALLQ RIDRG RVRRA++LR ERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +EI AEL R R EAARRK+E +AKR+A+E+E K LR K +A RM ER EKER++ATRG+LSS+T QRK LQGHFEALK+ G + YG++AAAV+AA G + P A R N TPR P+ P A + + S + +P + GA A R P+ AS +SLSL HG + +PP T AT + +PRK +A GGS SGD A LR+ Y+YD R G + S R +T T TPR RK R +A AAG G G GT A G+E R ETGR +A + D + G D+ + + + S XXXXXXXXX ++SD ++LR RYDREL+A+L EEQAAE AREKALAAA ARAKAAQARA Y G VA R+ +L++ELA ERREAS+RV+RVSE YE+AL KL
Sbjct: 13 QVKKERSNLVRAGKHPINGTTAVFATSAARPPTKPVPPTPRSRQFTTPPVSPYYSPRRKEDAFPSRSDNNGDGSSLASGAAWSSFECGDGSSVGGDNGSSSI-----ASAAGIGNPVLEAEAYRLEALRRRRFVELQQMLAFELRGLAREERDRQLAEKARAREAMAERKRAKMFEAADRARLARERSWQDREKISEREAAARRVVEDEAARRFDEQDRLRRTQAKLAAERRAELAAQKAALLQGRIDRGARVRRARQLRTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIAALEDRVASFRIRQKEIEEXXXXXXXXXAAELNRARHEAARRKIEGDAKRKADEVEGKVLREKRVAQXXXXXXXXXXXXXXXXXXXXXXXXDRMMERKAKADKERREAIRLKLEQDDAKVELLRLEKERLRATRGKLSSETTKQRKMLQGHFEALKEYSNGHSISYGELAAAVTAAGXXXXXXXXXXXXEPGGDRNCLGGANPAAAAARRPNATTPRAVRPSGPHHRADMSVARGGGADSLFPAPHSGSPRFPPPAQNDIKTGARA--RAAPRXXXXXXXXXXXASITTSLSLLVRDGSHGXXXXXK-TPPLTARATAHRRISPRKPSTSAGDRRGGSGSGDHRGARVDNPAAAGLREWYMYDTREGQKLVGRGSARGGTRTATASKAKTPRGRKNRLVKAKETAAGGLGHGRGGTTSSASETGRENRRP------ETGRRPLAEASDELESGSDDFEAYASMSSSYSTDANSTXXXXXXXXXLPSSRPSSPRGEPGASSSDADLLRGRYDRELLAVLAEEQAAEGAREKALAAAVARAKAAQARAGYVGGKRSSAAATGGQIKDGGCPESQGVSPMSGGEPDGVVATTARLAIAAAPGEGXXXXAVRGDGQDRREEEAAVATRDAIRLEKELATERREASERVLRVSEAYEEALRKL 983
BLAST of mRNA_C-linearis_contig9.16641.1 vs. uniprot
Match: A0A6H5JGL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL3_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.010e-57 Identity = 364/999 (36.44%), Postives = 442/999 (44.24%), Query Frame = 1
Query: 481 EVKKERSALVQGEKHTSKNANGEFTAPQRLRRFRPV---------ATPPVSPY-SPSRK--TAGLSFSQGEDSSSLVSTTIGSCSLGSDHRHRGDNSASRSRRTPRLSREGSGNPVLEGEAQRLEALKRRRFMELQQMLAFQLRSLARQERDRLMAETARAREATAEAKRSKMLEAADRVRIARERSGQEREKEVERQAAVKXXXXXXXXXXXXXXXXXXXXQAEVAAERRAELAAQKAALLQARIDRGVRVRRAQRLRNERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEIAARERE-LREEEVAE------------LARERQEAARRKVEREAKRRAEEMEAKFLRAKEIALAREIRKQQETAKTRAERQKKEEHRKRMAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKERIKATRGQLSSQTAMQRKNLQGHFEALKDQFRGCDVRYGKIAAAVSAATTAR------------------GD------SGPTTPATRHSNTATPRLGSPN-PRRAAKPAFR----ASSQSRSSYD-SPREE---------GAEADSRPVPQSQMESSCYLSGASTASSLSL-----PHGGVDGRRRSPPRTKGATTPGK-TPRKLRKAAS----GGGSRSGD----------VADLRKRYVYDDRNGN----------AVSTRVAKKTTTTPRNRKTR--SEQAIAAGHRGDGESGTPAKHRGKEATRSTASTTTETGREIV------AVSCDA-DDGYDEDKVLTATVTLLSXXXXXXXXXXXXXXXX-------------ATSDTEVLRARYDRELMAILEEEQAAESAREKALAAANARAKAAQARATYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------TVAAREEAQLKRELARERREASKRVMRVSEEYEKALEKL 3081
+VKKERS LV+ H F +PV TPPVSPY SP RK T + D +SL S S +AS S R S G GNPVLE EA RLEAL+RRRF+ELQQML F+LR LAR++RDR +AE AR REATAE KR+KM EAADR R+ARERS Q+REK ER+AA + QA++AAERRA LAAQKAALLQ RIDRG RVRRA++LR E XXXXXXX QE A + L + E+ L R R EAARRK+E +AKR+A+E+E K LR + IA RE M ER EKER++ATRG+LSS+ Q K LQGHFEALKD G + YG++AAAV+AA GD S P A R N TPR P+ P A + A S S +++ SPR GA A R P+ S AS SSLSL HG +PP T AT + +PRK +A G G SGD A LR+RY+YD R G T A KT PR RKT + +AA G G RG+ T S+ +E+GRE + A +CD G D+ + +T+ + S XXXXXXXXXXXXX ++SDT++LR+RYDREL+A+L EEQAAE REKALAAA ARAKAAQARA Y G XX VA RE +L++ELA ERREAS+RV+RVS+ YE+A+ KL
Sbjct: 6 QVKKERSNLVRAG-HPINGTTAVFATTAARPATKPVPATPRSRQFTTPPVSPYYSPRRKEDTFPSRSNNNGDGNSLASGAAWSSFDXXXXXXXXXXNASSSIR----SAAGIGNPVLEAEAYRLEALRRRRFVELQQMLTFELRGLAREKRDRQLAEKARTREATAERKRAKMFEAADRARLARERSWQDREKVAEREAAARRVAEDEAARRFDEQDRLRRTQAKLAAERRARLAAQKAALLQGRIDRGARVRRARQLRTEXXXXXXXXERDAAAETAKSTTVTPHSDCLVDEKRDTKKTRRARESEHEAKKAAAAERWAAARAGVEEARRRRDAATKTLQEKAGGQTAALEDREIXXXXXXXXXXXXXXLNRARHEAARRKIEGDAKRKADEIEGKVLREERIAQQREXXXXXXXXXXXXXXXXXXXXXXXMMERKAKTDKERREAIRLKLEQDDAKVELLRLEKERLQATRGKLSSEMTKQWKMLQGHFEALKDHSNGHSISYGELAAAVTAAGVGTXXXXXXXXXXXXXXXEPGGDRNRLRGSDPAAVAARRPNATTPRAVRPSGPHHCADMSVARGGGADSLSPAAHSGSPRFPPPAQNDIITGARA--RAAPRPXXXXXXXXSVASITSSLSLLVRDGSHGXXXXXM-TPPLTARATAHRRISPRKPSTSAGDRRGGSGRGSGDQRGARVDNPAAAGLRERYMYDTRAGQKRVGGGGARGGTKTAAASKTNI-PRGRKTHLVKTKELAADGLGHG--------RGE-----TTSSASESGREKLHPERPLAGACDELGSGTDDAEAVTSMSSSYSTDAXXXXXXXXXXXXXXXXXXXXXXXXGASSSDTDLLRSRYDRELLAVLAEEQAAEDDREKALAAAVARAKAAQARAGYIGRKVKRGRCPEGQGVSPMSGGEPDGVVATTARLAIAAAPVEGXXXXAVRGVEQDRREEEAAVATREAIRLEKELATERREASERVLRVSDAYEEAIRKL 982 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16641.1 >prot_C-linearis_contig9.16641.1 ID=prot_C-linearis_contig9.16641.1|Name=mRNA_C-linearis_contig9.16641.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=995bp MGMLRSIEVGSPPVATMAPVDGSGGGFSLDSPRSIEACRRRGLEDSDLEEback to top mRNA from alignment at C-linearis_contig9:2268986..2275899+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16641.1 ID=mRNA_C-linearis_contig9.16641.1|Name=mRNA_C-linearis_contig9.16641.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6914bp|location=Sequence derived from alignment at C-linearis_contig9:2268986..2275899+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:2268986..2275899+ >mRNA_C-linearis_contig9.16641.1 ID=mRNA_C-linearis_contig9.16641.1|Name=mRNA_C-linearis_contig9.16641.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5970bp|location=Sequence derived from alignment at C-linearis_contig9:2268986..2275899+ (Chordaria linearis ClinC8C monoicous)back to top |