mRNA_C-linearis_contig9.16603.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16603.1
Unique NamemRNA_C-linearis_contig9.16603.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 7.640e-23
Identity = 105/305 (34.43%), Postives = 144/305 (47.21%), Query Frame = 2
Query:   98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CR------CSAGRERGIGP-VQVVGAVPGNRPRL*RCSEVLGQGRGRCELSDPISGCDV-----------LFEAARRGCG*LVSDLLDSGADPNI----RFVNGTALHAATGAGREGTVSTLLARGTDNALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHS-IAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIEL 943
            + I K+VS GAT EQWA WLR PL HAAA GN+++       L + GV DG           G R  RG SL  A          SA  + G GP V VV +  G          VLG+          ++G DV           LF A + GC  LV +LL +GA+PN+     F +GT LHAA   G   T S LL+  + +              K G +A VK +LAA      R    HS + +AA+   + +++A+L +   VN  ++H  + LH AA+    G I VL++AGADI++
Sbjct:   13 VEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVD----RLLKAGV-DGKA---------GWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALY---QSVLGKHEAAARKLI-LAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTD--------------KNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHW-NPLHWAAQFNSTGCITVLLDAGADIDV 284          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.570e-22
Identity = 105/301 (34.88%), Postives = 138/301 (45.85%), Query Frame = 2
Query:   98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDG-------GVATADPVRCGGSRWTRGDSLWLA*CRCS------AGRERGIGPVQVVGAVPGNRPRL*RCSEVLGQGRGRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLARG-TD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHSIAWAAED-----GHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADI 937
            + I KL+  GAT EQWAEWLR PL HAAA GN+ +       L   G   G       G    D    GG+      +L  + C         + R   +    V G     +  +     + G    R    DP   C  L  A     G LV  LL  GA PN R ++G T LH A  +G    VSTLL    TD +ALD RG SPL+ A++ G  + V+ +L A      R      +   A D     GHV ++EAI+    +V A D +G +ALHHA  RG   A+DVL++AGAD+
Sbjct:   15 LEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVE----RLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVA-TLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLI-----IAGADVNRV---DPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA--RG-AQAVDVLLDAGADV 299          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.110e-12
Identity = 98/300 (32.67%), Postives = 126/300 (42.00%), Query Frame = 2
Query:  104 ISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDG-------GVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVPGNRPRL*R---CSEVLGQGR-----GRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNGTALHAATGAGREGTVSTLLARGTDNALDERGESPLIRAAKAGRLAGVKTIL-AAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAA----RRGQVGAIDVLIEAGADIEL 943
            + KLVS GA+ EQWAEWLR PL HAA+ GN ++       L + G   G       G    D    GG+       +  A  R  AG +     V  V  V   R  L     C       R           DP++ C VL +A +     LV+DL   GA PNIR           G G+   V+T +                  A + G LA V+T+L A   C   +      +  AAE   + ILEAILG    V+A D  GC+ALH A     R G   A+ +LIEAGA+ EL
Sbjct:   17 VFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVE----RLLQAGADAGAGWRGCRGRTLLDAAALGGNA-----DVMSALIRGGAGAD-----VNKV-TVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPNIRD--------DCGLGKTTYVTTFML-----------------AVRRGHLAIVETLLEAGADCSLRQWADYSPLDVAAEHRALPILEAILGRGVDVDAQDRAGCTALHTAVLFSDRAGP--AVHMLIEAGANTEL 274          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.960e-12
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNYRTLSVGVMSC 485
            TL DAAA GG   +VS LL AGAQPDVNVVS  S+ S+LY AT  G++DAAR L+ AGA VN+   +  ++ C
Sbjct:   71 TLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDPTGSILGC 143          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.310e-10
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNY 455
            +L DAAA GG+ ++VSG L+AGA+PDV VVS  S+ SAL      G+ED AR LV AGA VN+
Sbjct:  114 SLIDAAAVGGNVDVVSGFLEAGAEPDVQVVSWSSKTSALCTPVRFGHEDVARRLVTAGADVNF 176          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.030e-10
Identity = 73/223 (32.74%), Postives = 87/223 (39.01%), Query Frame = 2
Query:   98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVPGNRPRL*RCSEVLGQGRGRCELS---------DPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLARGTD--NALDERGESPLIRAAKAGRLAGVKTILAA 730
            + I KL+S  AT EQWA+WLR PL HAAA GNI +            +  G    A    C G                      G  P   V +V   R  L   + V G       L          DP   C     AA  G G LV +LL  GA PN R   G T LH A   G    VSTLL   +   NA D    SPL+ A+  G  + V+ +L A
Sbjct:   15 VEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERL--------LEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSAL-HLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLHSPLMLASANGHRSTVEALLRA 228          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.500e-10
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNY 455
            TL DAAA GG   +VS LL AGAQ DVNVVS  S+ SALY AT  G+EDAAR LV AGA V++
Sbjct:   71 TLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDF 133          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.790e-10
Identity = 95/303 (31.35%), Postives = 118/303 (38.94%), Query Frame = 2
Query:  104 ISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGA------VPGNRPRL*R---CSEVLGQGR-----GRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNGTA-LHAATGAGREGTVSTLLARGTDNALD---ERGESPLIRAAKAGRLAGVKTIL-AAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAA----RRGQVGAIDVLIEAGADIEL 943
            + KLVS GA+ EQWAEWLR  L HAA+ GN+S+       L R G   G           G R  R  +L  A                  GA      V   R  L     C       R           DP++ C VL +A +      V DLL  GA PNIR   G A L AA     EG VS LL    D  +       E+PL+ A + G LA V+T+L A   C   +                            V+A D  GC+ALH A     R G   A+ +L++A AD EL
Sbjct:   17 LFKLVSYGASREQWAEWLRVALEHAASRGNLSLVE----RLLRAGADAGS----------GWRGCRCRTLLDAAXXXXXXXXXXXXXXXXAGADVNKVTVSSRRSALYTATCCGHEAAAKRLILAGSDVNFRDPVAKCSVLSQAIQGSHTQFVDDLLIGGARPNIRDDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGP--AVHMLVKARADTEL 303          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.290e-9
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  578 LHAATGAGREGTVSTLLARGTD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASR-S*WLHSIA---WAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIEL 943
            LH A   G+EG V+TLLA G   N LD +G +PL  A + G L+ VK +LAA    + R   W  S +    AA+ G   +L AIL +   VN   + G ++LH AA   +V AIDVL+EAGA +E+
Sbjct:   42 LHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTD-GYTSLHVAALNNRVAAIDVLVEAGAHVEV 167          
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.530e-8
Identity = 83/300 (27.67%), Postives = 113/300 (37.67%), Query Frame = 2
Query:   98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVP-------GNRPRL*RCSEVLGQGRGRCELS---------DPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLAR-GTD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIE 940
            + I  L+S GAT EQW EWLR PL HAAA G   +            V     A AD    GG+ W+      L       G    +  +   G +P        +R      S V G      +L          DP                            PN R + G T LH A   G++  V+ L     TD + LD+ G SPL  A++ G L+ VKT+L A    + R+   +S                         A +HG +ALH      Q GA+DVL++AGAD++
Sbjct:   13 VGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVL------------VEKLLNAGAD----GGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLTDMPSTDKDILDKSGLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNASKHGYTALHAGCAMNQAGAMDVLLDAGADMD 296          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FXA8_ECTSI7.640e-2334.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1F4_9PHAE4.570e-2234.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ1_9PHAE1.110e-1232.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI5.960e-1256.16Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JW91_9PHAE8.310e-1057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI9.030e-1032.74Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LS36_ECTSI9.500e-1065.08Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FLL7_ECTSI9.790e-1031.35Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G6X8_ECTSI5.290e-942.52Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI4.530e-827.67Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1778655..1779597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3.7e-12
Seed eggNOG ortholog2880.D8LRZ8
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size943
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16603.1prot_C-linearis_contig9.16603.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1778828..1779175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930740.8521223-UTR-C-linearis_contig9:1778654..17788271622930740.8521223-UTR-C-linearis_contig9:1778654..1778827Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1778655..1778827 +
1690881224.9693415-UTR-C-linearis_contig9:1778654..17788271690881224.9693415-UTR-C-linearis_contig9:1778654..1778827Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1778655..1778827 +
1622930740.8806689-UTR-C-linearis_contig9:1779175..17795971622930740.8806689-UTR-C-linearis_contig9:1779175..1779597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1779176..1779597 +
1690881224.9971392-UTR-C-linearis_contig9:1779175..17795971690881224.9971392-UTR-C-linearis_contig9:1779175..1779597Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1779176..1779597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930740.8670871-CDS-C-linearis_contig9:1778827..17791751622930740.8670871-CDS-C-linearis_contig9:1778827..1779175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1778828..1779175 +
1690881224.9861662-CDS-C-linearis_contig9:1778827..17791751690881224.9861662-CDS-C-linearis_contig9:1778827..1779175Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1778828..1779175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16603.1

>prot_C-linearis_contig9.16603.1 ID=prot_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MPPRTATSRSLQRTDRSWGGRECGMEALPRPTLFDAAAQGGHAEIVSGLL
DAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNYRTLSVG
VMSCSRQLDVGVGSW*
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mRNA from alignment at C-linearis_contig9:1778655..1779597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16603.1 ID=mRNA_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=943bp|location=Sequence derived from alignment at C-linearis_contig9:1778655..1779597+ (Chordaria linearis ClinC8C monoicous)
GCCATGTTGTTGCTTTCCCCCTCTCACCTGTCACCCGGGAGAAGCTTGAA CAACATCGACTTCCCCAAGCGTGCGTCCCTAGAAGTTCTTGTCAGCAATA CATATCTCTAAGCTCGTCTCCCGTGGTGCCACGGACGAGCAGTGGGCCGA GTGGCTTCGGGGACCGTTGGGGCATGCCGCCGCGGACGGCAACATCTCGA TCTCTTCAACGCACTGATAGGAGCTGGGGCGGACGGGAGTGCGGGATGGA GGCGTTGCCACGGCCGACCCTGTTCGATGCGGCGGCTCAAGGTGGACACG CGGAGATAGTCTCTGGCTTGCTTGATGCAGGTGCTCAGCCGGACGTGAAC GTGGTATCGGCCCCGTCCAGGTTGTCGGCGCTGTACCTGGCAACAGACCT CGGTTATGAAGATGCAGCGAGGTGCTTGGTCAGGGCAGGGGCCGGTGTGA ACTATCGGACCCTATCAGTGGGTGTGATGTCCTGTTCGAGGCAGCTAGAC GTGGGTGTGGGTAGCTGGTGAGCGACCTGCTGGACAGCGGGGCTGATCCA AACATCCGTTTTGTGAATGGCACCGCACTCCACGCCGCCACAGGGGCTGG ACGCGAGGGGACTGTGTCGACCCTCCTGGCCAGGGGGACGGACAATGCAC TCGATGAACGCGGGGAATCACCGCTGATCAGGGCTGCCAAAGCGGGTCGT CTGGCCGGGGTGAAAACGATATTGGCTGCCGTGTGATGTTGAGCTTCCAG ATCTTAATGGCTACACAGCATCGCTTGGGCCGCTGAGGACGGGCACGTTC ACATTCTGGAAGCCATCCTCGGTTATGAGAGTAGCGTGAATGCTGCTGAC GAACACGGCTGTAGTGCACTGCATCATGCTGCTAGACGTGGCCAGGTGGG TGCCATCGACGTGTTGATCGAGGCGGGGGCCGACATAGAGCTG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1778655..1779597+

>mRNA_C-linearis_contig9.16603.1 ID=mRNA_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig9:1778655..1779597+ (Chordaria linearis ClinC8C monoicous)
ATGCCGCCGCGGACGGCAACATCTCGATCTCTTCAACGCACTGATAGGAG
CTGGGGCGGACGGGAGTGCGGGATGGAGGCGTTGCCACGGCCGACCCTGT
TCGATGCGGCGGCTCAAGGTGGACACGCGGAGATAGTCTCTGGCTTGCTT
GATGCAGGTGCTCAGCCGGACGTGAACGTGGTATCGGCCCCGTCCAGGTT
GTCGGCGCTGTACCTGGCAACAGACCTCGGTTATGAAGATGCAGCGAGGT
GCTTGGTCAGGGCAGGGGCCGGTGTGAACTATCGGACCCTATCAGTGGGT
GTGATGTCCTGTTCGAGGCAGCTAGACGTGGGTGTGGGTAGCTGGTGAAT
GCCGCCGCGGACGGCAACATCTCGATCTCTTCAACGCACTGATAGGAGCT
GGGGCGGACGGGAGTGCGGGATGGAGGCGTTGCCACGGCCGACCCTGTTC
GATGCGGCGGCTCAAGGTGGACACGCGGAGATAGTCTCTGGCTTGCTTGA
TGCAGGTGCTCAGCCGGACGTGAACGTGGTATCGGCCCCGTCCAGGTTGT
CGGCGCTGTACCTGGCAACAGACCTCGGTTATGAAGATGCAGCGAGGTGC
TTGGTCAGGGCAGGGGCCGGTGTGAACTATCGGACCCTATCAGTGGGTGT
GATGTCCTGTTCGAGGCAGCTAGACGTGGGTGTGGGTAGCTGGTGA
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