mRNA_C-linearis_contig9.16603.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 7.640e-23 Identity = 105/305 (34.43%), Postives = 144/305 (47.21%), Query Frame = 2
Query: 98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CR------CSAGRERGIGP-VQVVGAVPGNRPRL*RCSEVLGQGRGRCELSDPISGCDV-----------LFEAARRGCG*LVSDLLDSGADPNI----RFVNGTALHAATGAGREGTVSTLLARGTDNALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHS-IAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIEL 943
+ I K+VS GAT EQWA WLR PL HAAA GN+++ L + GV DG G R RG SL A SA + G GP V VV + G VLG+ ++G DV LF A + GC LV +LL +GA+PN+ F +GT LHAA G T S LL+ + + K G +A VK +LAA R HS + +AA+ + +++A+L + VN ++H + LH AA+ G I VL++AGADI++
Sbjct: 13 VEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVD----RLLKAGV-DGKA---------GWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALY---QSVLGKHEAAARKLI-LAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTD--------------KNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHW-NPLHWAAQFNSTGCITVLLDAGADIDV 284
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 106 bits (265), Expect = 4.570e-22 Identity = 105/301 (34.88%), Postives = 138/301 (45.85%), Query Frame = 2
Query: 98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDG-------GVATADPVRCGGSRWTRGDSLWLA*CRCS------AGRERGIGPVQVVGAVPGNRPRL*RCSEVLGQGRGRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLARG-TD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHSIAWAAED-----GHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADI 937
+ I KL+ GAT EQWAEWLR PL HAAA GN+ + L G G G D GG+ +L + C + R + V G + + + G R DP C L A G LV LL GA PN R ++G T LH A +G VSTLL TD +ALD RG SPL+ A++ G + V+ +L A R + A D GHV ++EAI+ +V A D +G +ALHHA RG A+DVL++AGAD+
Sbjct: 15 LEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVE----RLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVA-TLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLI-----IAGADVNRV---DPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA--RG-AQAVDVLLDAGADV 299
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.110e-12 Identity = 98/300 (32.67%), Postives = 126/300 (42.00%), Query Frame = 2
Query: 104 ISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDG-------GVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVPGNRPRL*R---CSEVLGQGR-----GRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNGTALHAATGAGREGTVSTLLARGTDNALDERGESPLIRAAKAGRLAGVKTIL-AAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAA----RRGQVGAIDVLIEAGADIEL 943
+ KLVS GA+ EQWAEWLR PL HAA+ GN ++ L + G G G D GG+ + A R AG + V V V R L C R DP++ C VL +A + LV+DL GA PNIR G G+ V+T + A + G LA V+T+L A C + + AAE + ILEAILG V+A D GC+ALH A R G A+ +LIEAGA+ EL
Sbjct: 17 VFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVE----RLLQAGADAGAGWRGCRGRTLLDAAALGGNA-----DVMSALIRGGAGAD-----VNKV-TVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPNIRD--------DCGLGKTTYVTTFML-----------------AVRRGHLAIVETLLEAGADCSLRQWADYSPLDVAAEHRALPILEAILGRGVDVDAQDRAGCTALHTAVLFSDRAGP--AVHMLIEAGANTEL 274
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 5.960e-12 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3
Query: 267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNYRTLSVGVMSC 485
TL DAAA GG +VS LL AGAQPDVNVVS S+ S+LY AT G++DAAR L+ AGA VN+ + ++ C
Sbjct: 71 TLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDPTGSILGC 143
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 8.310e-10 Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3
Query: 267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNY 455
+L DAAA GG+ ++VSG L+AGA+PDV VVS S+ SAL G+ED AR LV AGA VN+
Sbjct: 114 SLIDAAAVGGNVDVVSGFLEAGAEPDVQVVSWSSKTSALCTPVRFGHEDVARRLVTAGADVNF 176
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 9.030e-10 Identity = 73/223 (32.74%), Postives = 87/223 (39.01%), Query Frame = 2
Query: 98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVPGNRPRL*RCSEVLGQGRGRCELS---------DPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLARGTD--NALDERGESPLIRAAKAGRLAGVKTILAA 730
+ I KL+S AT EQWA+WLR PL HAAA GNI + + G A C G G P V +V R L + V G L DP C AA G G LV +LL GA PN R G T LH A G VSTLL + NA D SPL+ A+ G + V+ +L A
Sbjct: 15 VEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERL--------LEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSAL-HLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLHSPLMLASANGHRSTVEALLRA 228
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 9.500e-10 Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 3
Query: 267 TLFDAAAQGGHAEIVSGLLDAGAQPDVNVVSAPSRLSALYLATDLGYEDAARCLVRAGAGVNY 455
TL DAAA GG +VS LL AGAQ DVNVVS S+ SALY AT G+EDAAR LV AGA V++
Sbjct: 71 TLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDF 133
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 9.790e-10 Identity = 95/303 (31.35%), Postives = 118/303 (38.94%), Query Frame = 2
Query: 104 ISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGA------VPGNRPRL*R---CSEVLGQGR-----GRCELSDPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNGTA-LHAATGAGREGTVSTLLARGTDNALD---ERGESPLIRAAKAGRLAGVKTIL-AAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAA----RRGQVGAIDVLIEAGADIEL 943
+ KLVS GA+ EQWAEWLR L HAA+ GN+S+ L R G G G R R +L A GA V R L C R DP++ C VL +A + V DLL GA PNIR G A L AA EG VS LL D + E+PL+ A + G LA V+T+L A C + V+A D GC+ALH A R G A+ +L++A AD EL
Sbjct: 17 LFKLVSYGASREQWAEWLRVALEHAASRGNLSLVE----RLLRAGADAGS----------GWRGCRCRTLLDAAXXXXXXXXXXXXXXXXAGADVNKVTVSSRRSALYTATCCGHEAAAKRLILAGSDVNFRDPVAKCSVLSQAIQGSHTQFVDDLLIGGARPNIRDDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGP--AVHMLVKARADTEL 303
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 5.290e-9 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 2
Query: 578 LHAATGAGREGTVSTLLARGTD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASR-S*WLHSIA---WAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIEL 943
LH A G+EG V+TLLA G N LD +G +PL A + G L+ VK +LAA + R W S + AA+ G +L AIL + VN + G ++LH AA +V AIDVL+EAGA +E+
Sbjct: 42 LHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTD-GYTSLHVAALNNRVAAIDVLVEAGAHVEV 167
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 4.530e-8 Identity = 83/300 (27.67%), Postives = 113/300 (37.67%), Query Frame = 2
Query: 98 IHISKLVSRGATDEQWAEWLRGPLGHAAADGNISISSTH**ELGRTGVRDGGVATADPVRCGGSRWTRGDSLWLA*CRCSAGRERGIGPVQVVGAVP-------GNRPRL*RCSEVLGQGRGRCELS---------DPISGCDVLFEAARRGCG*LVSDLLDSGADPNIRFVNG-TALHAATGAGREGTVSTLLAR-GTD-NALDERGESPLIRAAKAGRLAGVKTILAAV*C*ASRS*WLHSIAWAAEDGHVHILEAILGYESSVNAADEHGCSALHHAARRGQVGAIDVLIEAGADIE 940
+ I L+S GAT EQW EWLR PL HAAA G + V A AD GG+ W+ L G + + G +P +R S V G +L DP PN R + G T LH A G++ V+ L TD + LD+ G SPL A++ G L+ VKT+L A + R+ +S A +HG +ALH Q GA+DVL++AGAD++
Sbjct: 13 VGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVL------------VEKLLNAGAD----GGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLHRAAYMGQDMVVAVLTDMPSTDKDILDKSGLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNASKHGYTALHAGCAMNQAGAMDVLLDAGADMD 296 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16603.1 >prot_C-linearis_contig9.16603.1 ID=prot_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp MPPRTATSRSLQRTDRSWGGRECGMEALPRPTLFDAAAQGGHAEIVSGLLback to top mRNA from alignment at C-linearis_contig9:1778655..1779597+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16603.1 ID=mRNA_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=943bp|location=Sequence derived from alignment at C-linearis_contig9:1778655..1779597+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1778655..1779597+ >mRNA_C-linearis_contig9.16603.1 ID=mRNA_C-linearis_contig9.16603.1|Name=mRNA_C-linearis_contig9.16603.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig9:1778655..1779597+ (Chordaria linearis ClinC8C monoicous)back to top |