mRNA_C-linearis_contig9.16594.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI) HSP 1 Score: 431 bits (1107), Expect = 1.240e-145 Identity = 261/335 (77.91%), Postives = 292/335 (87.16%), Query Frame = 1
Query: 1 MASLTDPKP--LEAAIAAAAKIRQRRSSSSMNNATATLRVSISDVVNINGKERQSAEKSRRGSAENLXAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAALEAVGDAGPIEKLQALLTRAKEKGMSAERLFEHFAPDGEASVTPAMFETALRKLGQRAFDLDEMELEHLVTTFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARSRLNNVESKDDLNVAARKVGRRRSSLRAIPIGKLVHQQGSRFFWRSTETIDVAFHHNSDEGLITISTRSLERGYNYLAIFVDAAKIPVPKSEAVARADSIGQFDRMDQEERQEATTEAMTALWVEYLQHR 999
MASL+DPK +E+ AA + RQRRSSSS+NNATAT+RVS+S VVN+NGK+ Q AEK+RR SA X XXXXXXXXXXXXXXXXXXXXXXXXX AAA+EA GD P+EKLQ LLT+AKE+GMSAERLFEHFAP GEASVTP MFE+ALRKLGQRAFDLDEMELEHLVT FDTDGNGTVELDEFMTFCLSIPSLPWRAEKAR RLNN ESKD+LNVAARK+ RRRSSLRA+PIG+LVHQ GSRFFWRS ETIDVA H N+DEGL+TISTR ERGYNY AIFVD +KIPV K+EAVARA+++GQF+ M ++ER+EAT +AMTAL VEYLQHR
Sbjct: 1 MASLSDPKGTGMESPSAAVPRARQRRSSSSINNATATMRVSVSGVVNVNGKDSQEAEKNRRESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAAAAVEAAGDVSPVEKLQVLLTKAKERGMSAERLFEHFAPGGEASVTPLMFESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKAR-RLNNAESKDELNVAARKIARRRSSLRAVPIGELVHQ-GSRFFWRSKETIDVALHLNADEGLMTISTRCPERGYNYPAIFVDVSKIPVHKTEAVARANAVGQFESMSKDERREATDKAMTALRVEYLQHR 333
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: A0A835YNE5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE5_9STRA) HSP 1 Score: 227 bits (578), Expect = 2.110e-65 Identity = 151/412 (36.65%), Postives = 212/412 (51.46%), Query Frame = 1
Query: 322 PIEKLQALLTRAKEKGMSAERLFEHFAPDGEASVTPAMFETALRKLGQRAFDLDEMELEHLVTTFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARSRLNNVESKDDLNVAARKVGRRRSSLRAIPIGKLVHQQGSRFFWRSTETIDVAFHHNSDEGLITISTRSLERGYNYLAIFVDAAKIPVPKSEA--------------------------VARADSIGQFDRMDQEERQEATTEAMTALWVEYLQHRLKVPDEVNEPKEAEXXXXXXXXXALNATESEGSSISASDDGKGERKKSGRAVVVPGTGGGTTSSMVARTTKPGEMTPQQRADDKAKHRPFLVKLSTDKWDSLLCARNIVLQTPHRFEAAARKTSMADFRRASLEFGLLAKETEILSTVAERKTRKVGASI 1479
P+EKLQALLT AKE+GMSAERLFE FAP G A++T FE ALR+L + F L EL+ L+ FD + NG +EL EFM FC++IPSL W+AE+AR R++ V+ + L AAR RRRS+ +A+ +G+ +H + FFWRS + +DV H N EG++ ISTRS +R + IFV+A++IP+ +++ +A+ + + + +ER E L EYL +RLKVPD+ N+P G S +A + KS A + A PFL +LSTD S+LC R +++ P+RF A R+ S+ DFRRASLE L ET L VAE K + G ++
Sbjct: 30 PLEKLQALLTAAKERGMSAERLFEFFAPAGSATMTADDFERALRELSPQHFPLSAAELDELMAHFDANRNGRIELSEFMEFCMAIPSLAWKAERAR-RMSAVDGPEALTEAARNSERRRSTCKAVDLGEKIHDR-KMFFWRSQQNLDVVLHENIGEGVVIISTRSFDRDLTFPPIFVEASRIPIARAQINKAVDDKELSVVDKRQAFPPQSHHAQIAKRQEGSRQEPISTQERAELYEATRKELISEYLLNRLKVPDDANKPP--------------------GLSAAAKSPKRSTSPKSVAAAAM------------------------------AAEAPFLQRLSTDGAGSVLCTRGLMVSKPYRFPTA-RRGSVDDFRRASLELQRLVGETSGLIDVAEAKAEEAGRTV 388
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 8.120e-15 Identity = 105/426 (24.65%), Postives = 180/426 (42.25%), Query Frame = 1
Query: 313 DAGPIEKLQALLTRAKEKGMSAERLFEHFAPDGEASVTPAMFETALRKLGQRAFDLDEMELEHLVTTFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARSRLNNVES-----KDDLNVAARKVGRRRSSLRA----------IPIGKLVHQQGSRFFWRSTETIDVAFHHNSDEGLITISTRSLERGYNYLAIFVDAAKIPVPKSEAV-------ARADSIGQFDRMDQEERQEATTEAMTALWVEYLQHRLKVPDEVNEPKEAEXXXXXXXXXALNATESEGSSISASDDGKGERKKSGRAVVVPGTGGGTTSSMVARTTK------PGEMT-PQQRADDK---AKHRPFLVKLSTD---KWDSLLCARNIVLQTPHRFEAAARKTSMADFRRASLEFGLLAKETEILSTVAERKTRKVGASIDS 1485
D+ P+E +++++ R KE G + +LF F + TFDTDG+GT+EL EF+ +CL I ++ W+AE+ R S + D + + R + A P+G L+++ GS+ FWR+ E++ +A H N ++ I IST + + VD+ I V +AV AD G+ R+ ++ R + +A ++ +YL RLK+ D ++A+ NAT+++ S+ + S + G V PGT + S+ A T PGE++ P ++D P +VKL D + S L +V H F ++ S DF+R E K+ A++ R+ S+++
Sbjct: 105 DSTPVEAMRSIMVRGKEHGWTTSQLFGVF-----------------------------------LETFDTDGSGTIELSEFIRWCLDIDTMAWKAERVRRTTGGQTSGGHGKRGDGEIGIDEAAARMAGEVAQAQLPPEQPRFPLGTLIYE-GSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADK-GEIQRLPEDARAKLFDKARASVLSDYLLARLKLID----GRDADG----------NATDTQASAAAIS-----AAARLGLGGVGPGTAPESASTARAPETPAEPVEPPGEVSLPVTKSDSIFPIGTPTPVVVKLPEDDGGESGSFLLEDELVFSELHTF---SKHVSYKDFKRVENEVSEGLKDGHDRIENADKAQRRAHGSLEN 471
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: F0XWQ4_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWQ4_AURAN) HSP 1 Score: 79.0 bits (193), Expect = 3.940e-12 Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 346 LTRAKEKGMSAERLFEHFAPDG---EASVTPAMFETALRKLGQRAFDLDEMELEHLVTTFDTDGNGTVELDEFMTFCLSIPSLPWRAEKAR 609
++ AKEKG+ +++F++F +G + +TP FE A++KLG + + EL L+ FD D NGTV ++EF+ +CL IP+L W+AEK R
Sbjct: 1 MSNAKEKGLRVDQIFKYFKSEGAGDDDDITPDDFEAAMKKLG---WSISAGELAALIDHFDEDKNGTVSMEEFLHYCLHIPTLAWKAEKLR 88
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.260e-9 Identity = 60/225 (26.67%), Postives = 102/225 (45.33%), Query Frame = 1
Query: 421 VTPAMFETALRKLGQRAFDLDEMELEHLVTTFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARSRL--NNVESKDD--LNVAARKVGRRRSSLR----------------AIPIGKLVHQQGSRFFWRSTETIDVAFHHNSDEGLITISTRSLERGYNYLAIFVDAAKIPVPKSEAVARADSIG------QFDRMDQEERQEATTE-AMTALWVEYLQHRLKVPD 1014
+T A F+ L LG F++ E + D +G+G+++L EF FCL IPS+ W+AE+AR + NN D L AAR + S + +GK+ ++ G +FFWR+ + I+V N +G + I + + + A ++ A+ + S G + DQ++ +A +E A A +Y+ HR+ +PD
Sbjct: 297 ITSASFQHGLATLG---FNISTEETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEDGDRELEKAARDMANETVSANDAAEGGLGGELAKLEPLVHLGKIFYR-GEKFFWRTKDLIEVVVQLNEAKGFLAIPASAAAEAE--ILNDLKAKRLAAKTEHAMGGSGSRGGESDANKEQAGDQQQEDQALSEKAHMAYIADYIVHRITMPD 515
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Match: A0A7S2D074_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D074_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-5 Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = 1
Query: 322 PIEKLQALLTRAKEKGMSAERLFEHFAPD-GEASVTPAMFETALRKL--GQRAFDLDEMELEHLVTTFD----TDGNGTVELDEFMTFCLSIPSLPWRAEKAR-------SRLNNVE------SKDDLNVAARKVGRRRSSLRAIPIGKLVHQQGSRFFWRSTETIDVAFHHNSDEGLITISTRSLERGYNYLAIFVDAAKIPVPKSEAVARADSI 909
P+EKL ++++AKE G S E +F F + GE + FE L+KL GQ A D D+ + FD NG V+L EF + L + ++ W+AE+ R S LN S D++ V + + I ++ H G +FFWRS +++ F I ++ + N IF+ + +I + + + A +S+
Sbjct: 94 PVEKLDLIMSKAKESGKSYEAIFNEFRHENGEINFED--FEIGLKKLIKGQTA-DPDDTATKEFRVMFDYLDDNQSNG-VDLKEFQEYALKMKNVSWKAERIRQSNDFPGSLLNKAVVNPATFSNDEIKTKTCVVDKHHTDT----ITEVYH--GPKFFWRSQTKLELVFTQYEITNCIVVTAFHEKLQVNLDPIFLKSDQIMLVAARSEADHESV 299 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16594.1 >prot_C-linearis_contig9.16594.1 ID=prot_C-linearis_contig9.16594.1|Name=mRNA_C-linearis_contig9.16594.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=496bp MASLTDPKPLEAAIAAAAKIRQRRSSSSMNNATATLRVSISDVVNINGKEback to top mRNA from alignment at C-linearis_contig9:1680405..1686799+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16594.1 ID=mRNA_C-linearis_contig9.16594.1|Name=mRNA_C-linearis_contig9.16594.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6395bp|location=Sequence derived from alignment at C-linearis_contig9:1680405..1686799+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1680405..1686799+ >mRNA_C-linearis_contig9.16594.1 ID=mRNA_C-linearis_contig9.16594.1|Name=mRNA_C-linearis_contig9.16594.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2976bp|location=Sequence derived from alignment at C-linearis_contig9:1680405..1686799+ (Chordaria linearis ClinC8C monoicous)back to top |