mRNA_C-linearis_contig9.16591.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16591.1
Unique NamemRNA_C-linearis_contig9.16591.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.890e-97
Identity = 165/215 (76.74%), Postives = 178/215 (82.79%), Query Frame = 1 
Query:   91 MQVICFTVLCALLVVITSVEGFGMNAQRSSFHR----TITSRSTHVSRPAGRRSSGTSMFFDFGKKKEEGSNARPVAGGTVKGGKKTKITQEVSPAQLRAQEKAAAIRERSRIA--KKTEGVFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARVPGQSAAACKRVAESMLFEAAVGTKSNYFGGYVETIETPDYVDPEADIMFKINKFFGRGKK 717
            MQ  C  +LCA++ +IT VEGF   + R S H     T  SRS   SR   RRSS T MFFDFGKK E  SNARP+AGGTVKGGKKTKITQ+V+PAQ RAQEKA AIRERSR A  +K+EGVFTPPQ FEAFKKARKEVPSGKG+AYWEKIAARVPGQ+AAACKRVAESMLFEAAVGTKSNYFGGY+ETIETPDYVDPEADIMFKINK FGRGKK
Sbjct:    1 MQATCIALLCAVVAMITCVEGF---STRPSLHTHRAATTASRSLQASRAGSRRSSQTRMFFDFGKKTE--SNARPMAGGTVKGGKKTKITQDVTPAQRRAQEKATAIRERSRKASTRKSEGVFTPPQ-FEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
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BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.000e-33
Identity = 79/162 (48.77%), Postives = 101/162 (62.35%), Query Frame = 1 
Query:  247 TSMFFDFGKKKE-EGSNARPVAGGTVKGGKKTKITQEVS---PAQLRAQEKAAAIRERSRIAKKTE-GVFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARVPGQSAAACKRVAESMLFEAAVGTKSNYFGGYVETIETPDYVDPEADIMFKINKFFGRGKK 717
            T M F  G  K    +++RP AG T KG KKT +  + S   PA +  + KA AI  +    K  E GVF+P +Q+E F  AR  VPSG  N YW++IA +VPGQ+A  CK++A  +LFE A GTK N+FGGYVETIE  DYVD +AD+M K+   F  GKK
Sbjct:   44 TQMVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPA-VERRRKAQAIAAKKAAEKAAEAGVFSP-EQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
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BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.570e-30
Identity = 74/151 (49.01%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:  253 MFFDFGKKKE-EGSNARPVAGGTVKGGKKTKITQEVS---PAQLRAQEKAAAIRERSRIAKKTE-GVFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARVPGQSAAACKRVAESMLFEAAVGTKSNYFGGYVETIETPDYVDPEADIMFKI 690
            M F  G  K    +++RP AG T KG KKT +  + S   PA +  + KA AI  +    K  E GVF+P +Q+E F  AR  VPSG  N YW++IA +VPGQ+A  CK++A  +LFE A GTK N+FGGYVETIE  DYVD +AD+M K+
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPA-VERRRKAQAIAAKKAAEKAAEAGVFSP-EQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKL 148
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BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-15
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:  424 KTEGVFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARVPGQSAAACKRVAESMLFEAAVGTKSNYFGGYVETIETPDYVDPEADIMFKINKFFG 705
            K EG FT  +Q +A + AR+EVPS   + YW+KIA++VPGQ+A  CK +   +L + A GT  N+FGGYVE  ET   VD EA +  ++   FG
Sbjct:  124 KLEGYFTN-EQLQALEVARREVPSSAAS-YWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAFG 215
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BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 2.590e-11
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  436 VFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARV-PGQSAAACKRVAESMLFEAAVGTKSNYFGGYV----ETIETPDYVDPEADIMFKINKFFG 705
            VFT  +Q   F +ARKE+PSG G+AYW+K+A RV  G +A  CKR+A++ LF+ A GT SN+F  +V    E +E+    +  AD M ++  F+G
Sbjct:   91 VFTD-KQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVESGYVDETAADPMTQMKNFWG 184
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSK3_ECTSI1.890e-9776.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZY5_9STRA2.000e-3348.77Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA1.570e-3049.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TIQ4_9STRA1.760e-1546.81Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2X777_9EUKA2.590e-1144.21Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1653617..1656222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.7e-76
Seed eggNOG ortholog2880.D8LSK3
Hectar predicted targeting categorysignal peptide
EggNOG OGs2D5NM@1,2SZ3Q@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001950.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size723
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16591.1prot_C-linearis_contig9.16591.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1653707..1656222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.477634-UTR-C-linearis_contig9:1653616..16537061622930738.477634-UTR-C-linearis_contig9:1653616..1653706Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1653617..1653706 +
1690881223.7123363-UTR-C-linearis_contig9:1653616..16537061690881223.7123363-UTR-C-linearis_contig9:1653616..1653706Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1653617..1653706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930738.5105064-CDS-C-linearis_contig9:1653706..16537671622930738.5105064-CDS-C-linearis_contig9:1653706..1653767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1653707..1653767 +
1690881223.725624-CDS-C-linearis_contig9:1653706..16537671690881223.725624-CDS-C-linearis_contig9:1653706..1653767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1653707..1653767 +
1622930738.528285-CDS-C-linearis_contig9:1654452..16546371622930738.528285-CDS-C-linearis_contig9:1654452..1654637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1654453..1654637 +
1690881223.7359445-CDS-C-linearis_contig9:1654452..16546371690881223.7359445-CDS-C-linearis_contig9:1654452..1654637Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1654453..1654637 +
1622930738.5421534-CDS-C-linearis_contig9:1655211..16553281622930738.5421534-CDS-C-linearis_contig9:1655211..1655328Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1655212..1655328 +
1690881223.7469633-CDS-C-linearis_contig9:1655211..16553281690881223.7469633-CDS-C-linearis_contig9:1655211..1655328Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1655212..1655328 +
1622930738.5592382-CDS-C-linearis_contig9:1655952..16562221622930738.5592382-CDS-C-linearis_contig9:1655952..1656222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1655953..1656222 +
1690881223.7561145-CDS-C-linearis_contig9:1655952..16562221690881223.7561145-CDS-C-linearis_contig9:1655952..1656222Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1655953..1656222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16591.1

>prot_C-linearis_contig9.16591.1 ID=prot_C-linearis_contig9.16591.1|Name=mRNA_C-linearis_contig9.16591.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp
MQVICFTVLCALLVVITSVEGFGMNAQRSSFHRTITSRSTHVSRPAGRRS
SGTSMFFDFGKKKEEGSNARPVAGGTVKGGKKTKITQEVSPAQLRAQEKA
AAIRERSRIAKKTEGVFTPPQQFEAFKKARKEVPSGKGNAYWEKIAARVP
GQSAAACKRVAESMLFEAAVGTKSNYFGGYVETIETPDYVDPEADIMFKI
NKFFGRGKKE*
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mRNA from alignment at C-linearis_contig9:1653617..1656222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16591.1 ID=mRNA_C-linearis_contig9.16591.1|Name=mRNA_C-linearis_contig9.16591.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2606bp|location=Sequence derived from alignment at C-linearis_contig9:1653617..1656222+ (Chordaria linearis ClinC8C monoicous)
CGGAAGGCGGTGACGTGTCTAGCGCGTTGAAGGTAATCACGCTTCTGTCG
TCCACTCTGCTCACCAGTCCTCTTGGAATAAAGGATAATCATGCAGGTCA
TCTGTTTTACCGTGCTATGTGCACTTCTTGTGGTGATCACGTCAGTGGAA
GGTAAGGTTGACACCCATGCTGGACCATCTAGCAGCATCACATGCTCGTG
TTGGTTGTCTTCGCCTCTGCTGATGTGTCTCTCTGCGCCGGTGTGCTGAT
GTCGGGAGTGCCGGTCCTTGGATCAGACGCATGTAGCATGCGGTGTAGCG
AGCGTTGTTGGGTCGTGGTCACGGAGGTTGTTGTGTTCGCCTGTCACCTG
TCAACTGAATCGCTCAACCCTACAACAGCAGCAGTGCTTGCTGGAAACTT
GCTGTAAGCGCATGTACACGTGTGACCTTTACCAGGAATATCAGTAGTAG
AGCGCCTTCACGGCCGGTAAAAACGAACGACAGAATGCTGTCTGCTGTCT
GCTGTCGACTGCTTTCAACCCCTTTGAATAACGGCCGCAGCATCGACAGT
CTATGGATTACGGCAGCACGTGCGGATTTAGGCAGGGAAGTTCATGTAGC
TTTGGCTGGAAATAACCACGAATGCAGTCGTCACTACTTGTACCCCTTTT
GTTTTTCAAGGTGTGCTCTTGATAAGAGGGTTACTGCTGTAGCAGCAGTG
GCAAGATCTTTGGCGCATTGGGATTCCGCGCGAAACCGGCTCTTGTGTGG
CGTCGTCTTTCTTGTGTTCAGGCGCGGTTGGGGAGATTGTTTCGACCCTC
TCAATTTCATACCATCAACTTTTGATCGTCCTACAGGTTTTGGGATGAAC
GCACAACGATCGAGCTTCCACCGAACAATCACATCACGATCAACCCACGT
GTCGCGACCGGCTGGGCGACGAAGCTCAGGGACCTCAATGTTCTTTGACT
TCGGGAAAAAGAAAGAGGAGGGGTCGAACGCGAGACCGGTAGCTGGCGGA
ACCGTGAAGGGTGGAAAAAAGGTGCGACTCTGTCATAACGTGTGAAAAGG
TTTGCGTCCCGGCGCGTGGGGCATTATTGACATTTCGGCTGCTAGCCAAC
GACGGGTGATAGTGCTGCTGGTGGGTTTATCCCTTAGCTCGATCCTGTTG
CTCCTTTGGTGGCACAAGGTCTAAATAGACGCAGCCAAGGGCTTCTAAGC
ATTAGGGTTTTGGAGCGCTGTCTCTGATGCTCGGCTCGTGCGGGTAGCTC
CCGTCGTGTACACTGGCGCGACTTATCTACGCAAGGATGCTTTTTTCATA
TGCACCAGATCATTTCAAGCTTAGGCTGTTTTTTTGCGTCTGCAATGGGG
GCATGGGTATGCACACGATGGCCGCACGACGCGCGTTTCGCCTTCCTCTC
GCGAGAATCGTTTTATTTCCATCAACCTATGGGCTACAGTCAGTAGCCAC
AGGAACAGCTCAATCCTACCGGTACGATACCACTTTGTTTTTGACGAGCC
TTTGTAAAGCCTGTATGGTTCTTGCTGCCACTGATGCCCCTCTCTCTCGC
CGCATTTTTTCCTCTCCTGGTGGTGGGCCTGTTCTTGCTTACCAGACGAA
GATAACCCAGGAGGTTTCCCCCGCGCAGCTGCGAGCGCAGGAGAAGGCCG
CGGCGATTAGGGAGCGAAGTCGAATCGCCAAGAAGACCGAGGGGGTCTTC
ACACCACCCCAGGTCAGTGAGGCACGCACCTACCTGTTGTACCAGCTACC
GAATTCAGTTTTCGCGAGCAAAAACTACGCCCGTTTCATCGAGTGGAGAA
AACCGCGGGATGTGGCACGTTTAACGTGACACCCACCAGCTTTAGCAAAG
CAACAACGCCGCCAACCGATGGAAAGTTACAGAGACCACGAAGAATGAGG
AGAGAAGGAAATAGATGATTGGAGTAGGGACGTGCGTGCGTAGTGTACCC
GAAACACCCCGCAGCCCATCGTGTAACTCCTTGTGCAGTCTTTCTCTGGA
CTAAATTCTACGTGCACACGGGCACCACTCGGGTTGAGTGTGTCAGCAGG
CAAGGAATGGCCGGCCAAAACCCGGGAAAAGTGCTAGAAAACGCTTGTGT
TGGCACCGCGACCGTAACCATGGAATATCGCGGCACCATCCTATTGCAAT
TCCTTTCCAGAAGACCCAAGCCTCTGTTTTTGCCACACGTTTTCTTGGCC
GGGGTCTATATAATTTACTGCTGTACTTGACGATATGCCCTCAAGACATG
CCAACGCACGGGTTATACCGCTGCCTGCCGCGTACTTACACCTCTGATCT
TCGCTTCTCGTGCGCTTTTTCCAAACCAACCCCGAGCAGTTCGAGGCCTT
CAAGAAGGCGCGGAAGGAGGTACCCTCCGGCAAGGGAAACGCGTACTGGG
AAAAGATCGCGGCGCGGGTGCCCGGCCAGAGCGCGGCGGCCTGCAAGCGG
GTGGCGGAGAGCATGCTGTTCGAGGCCGCGGTTGGCACGAAGAGCAACTA
CTTTGGCGGCTACGTCGAGACGATTGAGACCCCGGATTACGTGGACCCGG
AGGCGGACATCATGTTCAAGATCAACAAGTTTTTCGGCCGCGGGAAGAAG
GAATAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1653617..1656222+

>mRNA_C-linearis_contig9.16591.1 ID=mRNA_C-linearis_contig9.16591.1|Name=mRNA_C-linearis_contig9.16591.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig9:1653617..1656222+ (Chordaria linearis ClinC8C monoicous)
ATGCAGGTCATCTGTTTTACCGTGCTATGTGCACTTCTTGTGGTGATCAC
GTCAGTGGAAGATGCAGGTCATCTGTTTTACCGTGCTATGTGCACTTCTT
GTGGTGATCACGTCAGTGGAAGGTTTTGGGATGAACGCACAACGATCGAG
CTTCCACCGAACAATCACATCACGATCAACCCACGTGTCGCGACCGGCTG
GGCGACGAAGCTCAGGGACCTCAATGTTCTTTGACTTCGGGAAAAAGAAA
GAGGAGGGGTCGAACGCGAGACCGGTAGCTGGCGGAACCGTGAAGGGTGG
AAAAAAGGTTTTGGGATGAACGCACAACGATCGAGCTTCCACCGAACAAT
CACATCACGATCAACCCACGTGTCGCGACCGGCTGGGCGACGAAGCTCAG
GGACCTCAATGTTCTTTGACTTCGGGAAAAAGAAAGAGGAGGGGTCGAAC
GCGAGACCGGTAGCTGGCGGAACCGTGAAGGGTGGAAAAAAGACGAAGAT
AACCCAGGAGGTTTCCCCCGCGCAGCTGCGAGCGCAGGAGAAGGCCGCGG
CGATTAGGGAGCGAAGTCGAATCGCCAAGAAGACCGAGGGGGTCTTCACA
CCACCCCAGACGAAGATAACCCAGGAGGTTTCCCCCGCGCAGCTGCGAGC
GCAGGAGAAGGCCGCGGCGATTAGGGAGCGAAGTCGAATCGCCAAGAAGA
CCGAGGGGGTCTTCACACCACCCCAGCAGTTCGAGGCCTTCAAGAAGGCG
CGGAAGGAGGTACCCTCCGGCAAGGGAAACGCGTACTGGGAAAAGATCGC
GGCGCGGGTGCCCGGCCAGAGCGCGGCGGCCTGCAAGCGGGTGGCGGAGA
GCATGCTGTTCGAGGCCGCGGTTGGCACGAAGAGCAACTACTTTGGCGGC
TACGTCGAGACGATTGAGACCCCGGATTACGTGGACCCGGAGGCGGACAT
CATGTTCAAGATCAACAAGTTTTTCGGCCGCGGGAAGAAGGAATAGCAGT
TCGAGGCCTTCAAGAAGGCGCGGAAGGAGGTACCCTCCGGCAAGGGAAAC
GCGTACTGGGAAAAGATCGCGGCGCGGGTGCCCGGCCAGAGCGCGGCGGC
CTGCAAGCGGGTGGCGGAGAGCATGCTGTTCGAGGCCGCGGTTGGCACGA
AGAGCAACTACTTTGGCGGCTACGTCGAGACGATTGAGACCCCGGATTAC
GTGGACCCGGAGGCGGACATCATGTTCAAGATCAACAAGTTTTTCGGCCG
CGGGAAGAAGGAATAG
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