mRNA_C-linearis_contig9.16586.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16586.1
Unique NamemRNA_C-linearis_contig9.16586.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.800e-50
Identity = 113/214 (52.80%), Postives = 137/214 (64.02%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTFRGWRRRTPLHIAAESGAEGAASILLARG-ADKNALDSLRESPLMKAAEG 705
            YP+RA LEG   EIFK++  G TP QW+EWLR PLEHAAA GN+ L   L+ AGA+G AGWRGC GRT+L AAA GGN  VV++L+ +G   DVNVV   S  S L +A++ GH  AA+ LI  GADVN  DP   C  +  AVE    +L++ LL  GA PN+ R    RTPLH+AA SG     S LL     D +ALDS   SPLM A+EG
Sbjct:    4 YPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNS-RTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEG 216
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 2.070e-50
Identity = 104/197 (52.79%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:   82 RASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVVS--GMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTF--RGWRRRTPLHIAAESGAEGAASILLAR-GADKN 657
            + S  G   EIFK+VS G TP QW+ WLR PLEHAAA GN+ L + L+ AG DG AGWRGC GR+LL AAA GGNA V+S+L+ AG  PDVNVV S  G S L+ + L  H  AAR LI  GADVNF D A     +  AV+ G ++L+ +LL AGANPN      +   TPLH AA+ G    AS+LL+    DKN
Sbjct:    5 QTSPSGEEVEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKN 201
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.030e-49
Identity = 91/163 (55.83%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPN 555
            +PER SL+GL  E+FK+VS G +  QW+EWLR+PLEHAA+ GN  L   L+ AGAD  AGWRGC GRTLL AAA GGNA V+S+L+  GA  DVN V   S  S L  AT  GH  AA+ L+ TGADVNFRDP   C ++ QA++    +L+NDL   GA PN
Sbjct:    4 FPERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPN 166
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.990e-47
Identity = 87/135 (64.44%), Postives = 102/135 (75.56%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAG 471
            YPER   +G+  EI+K+VS   TP QW EWLR+PLEHAAA GN+ L N+L+ AGADGSAGW+GC GRTL+ AAA GG+  VVS+L+ AGAQPDVNVV   S  S L+ AT+ GH DAAR LIT GADVNF DP G
Sbjct:    4 YPERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDPTG 138
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.450e-44
Identity = 84/133 (63.16%), Postives = 101/133 (75.94%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDP 465
            YPER  L+G+  EI+K+VS   TP QW EWLR+PLEHAAA GN+ L ++L+GAGADGSAGWRGC GRTL+ AAA GG+  VVS+L+ AGAQ DVNVV   S  S L+ AT+ GH DAAR L+  GADV+F DP
Sbjct:    4 YPERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDFEDP 136
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.820e-44
Identity = 88/167 (52.69%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:   40 CKEQHSMSDTR-YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDL 531
            C   H+ + T  YP+R  LEGL  EIFK+VS   TP QW EWL++PLE AAA GN +LF  L+ AGA GSAGWRGC  R+L+ AAA GGN  VVS  ++AGA+PDV VV   S  S L      GH D AR L+T GADVNF DP        QA   G E+L+ D+
Sbjct:   35 CTSDHTDTKTHIYPKRVLLEGLEIEIFKLVSYSATPEQWKEWLQVPLERAAALGNRDLFYKLLEAGAYGSAGWRGCRDRSLIDAAAVGGNVDVVSGFLEAGAEPDVQVVSWSSKTSALCTPVRFGHEDVARRLVTAGADVNFVDPMRKSPAFAQATRAGYEQLVGDI 201
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.920e-40
Identity = 101/211 (47.87%), Postives = 120/211 (56.87%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTFRGWRRRTPLHIAAESGAEGAASILLARGADK-NALDSLRESPLMKA 696
            YP+RA LEG   EIFK++S   TP QW++WLR PLEHAAA GNI L   L+ AGADG AGWRGC GRT+L AA              +G  PDVNVV   S  S L LA + GH  AAR L+  GA++   DP   C     A E G  +L+ +LL  GA PN+ R    RTPLH+AA  G     S LL   +   NA D+   SPLM A
Sbjct:    4 YPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNS-RTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLHSPLMLA 213
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 8.430e-40
Identity = 89/173 (51.45%), Postives = 113/173 (65.32%), Query Frame = 1 
Query:   73 YPERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHL-------ITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTFR 564
            YP+R  L+G+  EI+K+VS G TP QW EWLR+PLEHAAA GN+ L N+L+ AGADGSAGWRGC  RTL+ AAA GG+  VVS+L+ AGAQPDVN V   S  S L+ AT+ GH  AAR L       +  GA  + +D +G   + I A   G   ++N LL AGA+ +  R
Sbjct:    4 YPKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPDVNTVSISSKRSALYTATVCGHEHAARGLDRIVSALLLRGAYTDAQDTSGATPL-IYACGSGHLSVVNTLLAAGADVDIIR 175
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.990e-39
Identity = 102/210 (48.57%), Postives = 123/210 (58.57%), Query Frame = 1 
Query:   76 PERASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTFRGWRRRTPLHIAAESGAEGAASILLA-RGADKNALDSLRESPLMKA 696
            P+RA LE    EIFK++S G TP +W+EWLR P EHAAA GNI L   L+ AGADG AGWRGC  RT+L AAA GGNA VV+ L+ +   PDVNVV   S  S L LA    H  AAR L+  GAD +  DP         A E G ++L+++ L  GA PN+ R    RTPLH+A   G     S LL       +ALD+   SPLM A
Sbjct:    5 PKRALLEEAELEIFKLLSFGATPERWAEWLRAPQEHAAARGNIGLVERLLEAGADGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACPNS-RSRVGRTPLHLADGLGNNRDVSALLGDANTHMDALDNDGFSPLMLA 213
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BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.400e-39
Identity = 80/148 (54.05%), Postives = 101/148 (68.24%), Query Frame = 1 
Query:   82 RASLEGLVGEIFKVVSRGTTPGQWSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASGGNAAVVSSLVDAGAQPDVNVVV--SGMSPLFLATLLGHGDAARHLITTGADVNFRDPAGMCDIVIQAVEIGSEEL 519
            R+ L+G   EIFK+VS+G TP QW+EWLR+PLEHAAA GN++L N L+ AGADG AGWRGC  RTLL AA SGGNA V+S+L+ AG  PD NV+   +G S L+ + L      AR LI  GADVN +D A     ++ AV  G ++L
Sbjct:    7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPDANVLAPSTGRSVLYQSILSNQKAVARELILAGADVNIKDRAEKAGPLLAAVRAGCDDL 154
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1F4_9PHAE1.800e-5052.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI2.070e-5052.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ1_9PHAE1.030e-4955.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI2.990e-4764.44Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI1.450e-4463.16Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JW91_9PHAE1.820e-4452.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE08_ECTSI1.920e-4047.87Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LRS0_ECTSI8.430e-4051.45Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JY41_9PHAE1.990e-3948.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K513_9PHAE3.400e-3954.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1632315..1633021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue8.3e-43
Seed eggNOG ortholog2880.D7FXA8
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size709
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.6528769-CDS-C-linearis_contig9:1632314..16330191622930737.6528769-CDS-C-linearis_contig9:1632314..1633019Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1632315..1633019 +
1690881223.4549801-CDS-C-linearis_contig9:1632314..16330191690881223.4549801-CDS-C-linearis_contig9:1632314..1633019Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1632315..1633019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16586.1prot_C-linearis_contig9.16586.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1632315..1633019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16586.1

>prot_C-linearis_contig9.16586.1 ID=prot_C-linearis_contig9.16586.1|Name=mRNA_C-linearis_contig9.16586.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=235bp
ALAVSCSWSPSRICKEQHSMSDTRYPERASLEGLVGEIFKVVSRGTTPGQ
WSEWLRLPLEHAAADGNIELFNALIGAGADGSAGWRGCEGRTLLHAAASG
GNAAVVSSLVDAGAQPDVNVVVSGMSPLFLATLLGHGDAARHLITTGADV
NFRDPAGMCDIVIQAVEIGSEELLNDLLNAGANPNTFRGWRRRTPLHIAA
ESGAEGAASILLARGADKNALDSLRESPLMKAAEG
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mRNA from alignment at C-linearis_contig9:1632315..1633021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16586.1 ID=mRNA_C-linearis_contig9.16586.1|Name=mRNA_C-linearis_contig9.16586.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=707bp|location=Sequence derived from alignment at C-linearis_contig9:1632315..1633021+ (Chordaria linearis ClinC8C monoicous)
GCTTTGGCTGTCTCATGCTCTTGGTCTCCGTCGAGGATATGCAAAGAGCA
ACACAGCATGAGCGACACCAGATACCCCGAGCGTGCTTCCCTAGAAGGAC
TTGTTGGCGAGATATTTAAGGTGGTCTCCCGAGGTACCACGCCCGGGCAG
TGGTCCGAGTGGCTCCGGTTACCACTTGAGCATGCCGCTGCCGACGGCAA
CATCGAGCTCTTCAACGCGCTCATAGGAGCTGGGGCGGACGGGAGTGCGG
GATGGAGGGGTTGTGAAGGACGTACCCTGCTCCATGCAGCCGCTTCCGGT
GGGAATGCGGCGGTGGTCTCTAGCTTGGTTGATGCAGGTGCTCAGCCAGA
CGTGAACGTGGTGGTTAGCGGGATGTCGCCACTGTTCCTGGCAACATTGC
TTGGTCACGGAGATGCAGCGAGGCACTTGATTACGACAGGAGCCGATGTG
AACTTTCGGGACCCTGCCGGCATGTGTGACATCGTCATTCAGGCAGTAGA
GATTGGGTCGGAGGAGCTGCTGAACGACCTGCTGAACGCCGGGGCTAATC
CGAACACTTTTCGTGGCTGGCGGAGACGCACTCCGCTCCACATCGCCGCA
GAATCTGGGGCCGAGGGAGCTGCGTCGATCCTATTGGCCAGGGGGGCGGA
CAAGAATGCACTCGACAGCTTGCGTGAATCGCCTCTGATGAAGGCTGCCG
AAGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1632315..1633021+

>mRNA_C-linearis_contig9.16586.1 ID=mRNA_C-linearis_contig9.16586.1|Name=mRNA_C-linearis_contig9.16586.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at C-linearis_contig9:1632315..1633021+ (Chordaria linearis ClinC8C monoicous)
GCTTTGGCTGTCTCATGCTCTTGGTCTCCGTCGAGGATATGCAAAGAGCA
ACACAGCATGAGCGACACCAGATACCCCGAGCGTGCTTCCCTAGAAGGAC
TTGTTGGCGAGATATTTAAGGTGGTCTCCCGAGGTACCACGCCCGGGCAG
TGGTCCGAGTGGCTCCGGTTACCACTTGAGCATGCCGCTGCCGACGGCAA
CATCGAGCTCTTCAACGCGCTCATAGGAGCTGGGGCGGACGGGAGTGCGG
GATGGAGGGGTTGTGAAGGACGTACCCTGCTCCATGCAGCCGCTTCCGGT
GGGAATGCGGCGGTGGTCTCTAGCTTGGTTGATGCAGGTGCTCAGCCAGA
CGTGAACGTGGTGGTTAGCGGGATGTCGCCACTGTTCCTGGCAACATTGC
TTGGTCACGGAGATGCAGCGAGGCACTTGATTACGACAGGAGCCGATGTG
AACTTTCGGGACCCTGCCGGCATGTGTGACATCGTCATTCAGGCAGTAGA
GATTGGGTCGGAGGAGCTGCTGAACGACCTGCTGAACGCCGGGGCTAATC
CGAACACTTTTCGTGGCTGGCGGAGACGCACTCCGCTCCACATCGCCGCA
GAATCTGGGGCCGAGGGAGCTGCGTCGATCCTATTGGCCAGGGGGGCGGA
CAAGAATGCACTCGACAGCTTGCGTGAATCGCCTCTGATGAAGGCTGCCG
AAGGGGCTTTGGCTGTCTCATGCTCTTGGTCTCCGTCGAGGATATGCAAA
GAGCAACACAGCATGAGCGACACCAGATACCCCGAGCGTGCTTCCCTAGA
AGGACTTGTTGGCGAGATATTTAAGGTGGTCTCCCGAGGTACCACGCCCG
GGCAGTGGTCCGAGTGGCTCCGGTTACCACTTGAGCATGCCGCTGCCGAC
GGCAACATCGAGCTCTTCAACGCGCTCATAGGAGCTGGGGCGGACGGGAG
TGCGGGATGGAGGGGTTGTGAAGGACGTACCCTGCTCCATGCAGCCGCTT
CCGGTGGGAATGCGGCGGTGGTCTCTAGCTTGGTTGATGCAGGTGCTCAG
CCAGACGTGAACGTGGTGGTTAGCGGGATGTCGCCACTGTTCCTGGCAAC
ATTGCTTGGTCACGGAGATGCAGCGAGGCACTTGATTACGACAGGAGCCG
ATGTGAACTTTCGGGACCCTGCCGGCATGTGTGACATCGTCATTCAGGCA
GTAGAGATTGGGTCGGAGGAGCTGCTGAACGACCTGCTGAACGCCGGGGC
TAATCCGAACACTTTTCGTGGCTGGCGGAGACGCACTCCGCTCCACATCG
CCGCAGAATCTGGGGCCGAGGGAGCTGCGTCGATCCTATTGGCCAGGGGG
GCGGACAAGAATGCACTCGACAGCTTGCGTGAATCGCCTCTGATGAAGGC
TGCCGAAGGG
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