mRNA_C-linearis_contig9.16581.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16581.1
Unique NamemRNA_C-linearis_contig9.16581.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16581.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.940e-20
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 2 
Query:   44 RKEDYQEKFRALFDY--CFKQFLGGRGGVATAGMVCIFTQAGVMVAWKVLPTAESPYD 211
            RKEDY  KFR LF    C KQFLGGRGGVATAGMVC+FT AGVMVAWKVLPTAESP D
Sbjct:  632 RKEDYITKFRPLFHDGDCSKQFLGGRGGVATAGMVCVFTPAGVMVAWKVLPTAESPND 689
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BLAST of mRNA_C-linearis_contig9.16581.1 vs. uniprot
Match: A0A6H5JLJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.400e-20
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:   44 RKEDYQEKFRALFDY--CFKQFLGGRGGVATAGMVCIFTQAGVMVAWKVLPTAESP 205
            RKEDY  KFRALF    C KQFLGGRGGVATAGMVC+FT AGV+VAWKVLPTAESP
Sbjct:  110 RKEDYIAKFRALFHDGDCSKQFLGGRGGVATAGMVCVFTPAGVVVAWKVLPTAESP 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE2.940e-2081.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLJ6_9PHAE8.400e-2082.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1608733..1609274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.9669409-CDS-C-linearis_contig9:1608732..16087681622930701.9669409-CDS-C-linearis_contig9:1608732..1608768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1608733..1608768 +
1690881204.9842052-CDS-C-linearis_contig9:1608732..16087681690881204.9842052-CDS-C-linearis_contig9:1608732..1608768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1608733..1608768 +
1622930702.0016897-CDS-C-linearis_contig9:1609095..16092721622930702.0016897-CDS-C-linearis_contig9:1609095..1609272Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1609096..1609272 +
1690881204.9935913-CDS-C-linearis_contig9:1609095..16092721690881204.9935913-CDS-C-linearis_contig9:1609095..1609272Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1609096..1609272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16581.1prot_C-linearis_contig9.16581.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1608733..1609272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16581.1

>prot_C-linearis_contig9.16581.1 ID=prot_C-linearis_contig9.16581.1|Name=mRNA_C-linearis_contig9.16581.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=71bp
NYDKTAAEAASQLPEKGGLSGKVSRAVRLLLQAVPWRPRGGSDSGHGMHL
HPSWCHGGVEGATHGRKPLRH
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mRNA from alignment at C-linearis_contig9:1608733..1609274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16581.1 ID=mRNA_C-linearis_contig9.16581.1|Name=mRNA_C-linearis_contig9.16581.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=542bp|location=Sequence derived from alignment at C-linearis_contig9:1608733..1609274+ (Chordaria linearis ClinC8C monoicous)
AATTATGACAAAACAGCAGCTGAAGCAGCTTCACAAGTGCGTTTAGTGTT
CGGACGCGTGGTCGTGTGCCGTATTTCTCCGCGCCGGATTGCTGCAGGAT
GGAAAGTAGGGCCCATGCGTGACGCAGAACGTACTGTTGAGTGCAACCCC
GTTCGGCCTCTTTCGGGGGCATGCTGAACACGAACCCCAGTTGTGCTTTT
TTCAACTTCCCAGCACAGTGCCCGGTTGCACTTTAATCTCGATTCGCTGT
GCATGAAAGCCCTGAAAAAATGTTGGGGTTGTAGGCACGTCTCGCATCCC
CATGTTCAACGAAGGCTCCCGATATCTCGATGTTCCTGTGGCGTCTTTTT
CCGTGTGGTGCAGCTACCCGAGAAAGGAGGACTATCAGGAAAAGTTTCGC
GCGCTGTTCGATTACTGCTTCAAGCAGTTCCTTGGAGGCCGAGGGGGGGT
AGCGACAGCGGGCATGGTATGCATCTTCACCCAAGCTGGTGTCATGGTGG
CGTGGAAGGTGCTACCCACGGCCGAAAGCCCCTACGACATAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1608733..1609274+

>mRNA_C-linearis_contig9.16581.1 ID=mRNA_C-linearis_contig9.16581.1|Name=mRNA_C-linearis_contig9.16581.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at C-linearis_contig9:1608733..1609274+ (Chordaria linearis ClinC8C monoicous)
AATTATGACAAAACAGCAGCTGAAGCAGCTTCACAAAATTATGACAAAAC
AGCAGCTGAAGCAGCTTCACAACTACCCGAGAAAGGAGGACTATCAGGAA
AAGTTTCGCGCGCTGTTCGATTACTGCTTCAAGCAGTTCCTTGGAGGCCG
AGGGGGGGTAGCGACAGCGGGCATGGTATGCATCTTCACCCAAGCTGGTG
TCATGGTGGCGTGGAAGGTGCTACCCACGGCCGAAAGCCCCTACGACATC
TACCCGAGAAAGGAGGACTATCAGGAAAAGTTTCGCGCGCTGTTCGATTA
CTGCTTCAAGCAGTTCCTTGGAGGCCGAGGGGGGGTAGCGACAGCGGGCA
TGGTATGCATCTTCACCCAAGCTGGTGTCATGGTGGCGTGGAAGGTGCTA
CCCACGGCCGAAAGCCCCTACGACAT
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