mRNA_C-linearis_contig9.16571.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE) HSP 1 Score: 729 bits (1883), Expect = 7.140e-257 Identity = 412/559 (73.70%), Postives = 443/559 (79.25%), Query Frame = 1
Query: 103 MVPRRRKLMVGALTLLSCSGPTLSFLPSTTHTAA-------VSSSRGLPTAAVDPARSQHRQRRERTHGLPG-----------GDKQEKIRSSLRAPTVADRSSSGIKGLRMMAPAAAAXDXGXXXXXXXXXXXXXDAPTRSSSGIATPTTPLQDXXXXXXXXXXXXXDELPLTLDKALEEGVNRAMRGDTGVLRQVLAPGVEWRGPLGSNVGLAKVEEELRGLGNLLSEPRMSVSASLDGARRLEWIGSGTWPLPWLPRFIVRGASTIETGADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVIKRTLGYSIREYAPRLVTQPSLTDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYVTGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRANRITWTVPVPTAMGLDVKPLPEPPSERERGEDQRSRHVRQGPRRIAVANFNGIPQDPEAAEVRAKLIKSLAADGITPNKGKDGRIRSGILMHNSVACFAKGGKLAMSILYHRPKYIGVGNEVFVELDDEEAVTGEVVDGKVGGGSW 1725
MVPRRR+ ALTL+SCS PTL+FLPST HTAA + + TAA ARS+ RQ + RT L GD +E R + R R S+ G X X XXXXXXXXXXXXX XXXXXXXXXXX ELPLTLDKALEEGVNRAMRGD GVLRQVLAPGVEWRGPLG+N GLAKVEEELRGLG+LLS PRMSV AS DGA+RLEWI SGTWPLPWLPRFIV+GAS ++TG DGKVV ITDTWEGNP++LGL+HLVPGFWDIWHQLGSPPAEK PYRV+KR LGY IREYAPRL TQPSL DYSNSREIRKALILPGFCHDG++KTSGRKPDEYYVTGP+EVAIQPFIATGNFPNGTWFNGT REASQSRRANRITWTVP+PTAMGLD LPEPPSERERGEDQRSRHVRQG RRIAV NFNGIPQDPEAAEVRAKL+K LAADG+ P+KG DGR+RSGILMHNSVACF K GKLAMSILYHRPKYIG+GNEVFVELD EEAVT EVV+GKVGGG+W
Sbjct: 1 MVPRRRRAFTAALTLVSCSCPTLAFLPSTPHTAAXXXXXXXARRAGNIATAADQVARSEPRQCQSRTRALAXXXXXXXXXXXRGDLEEGKRYNDRT----GRRSTATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXELPLTLDKALEEGVNRAMRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLSAPRMSVFASKDGAKRLEWIASGTWPLPWLPRFIVKGASKLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTRREASQSRRANRITWTVPIPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPSKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVGGGTW 546
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI) HSP 1 Score: 678 bits (1750), Expect = 1.820e-239 Identity = 322/373 (86.33%), Postives = 346/373 (92.76%), Query Frame = 1
Query: 607 MRGDTGVLRQVLAPGVEWRGPLGSNVGLAKVEEELRGLGNLLSEPRMSVSASLDGARRLEWIGSGTWPLPWLPRFIVRGASTIETGADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVIKRTLGYSIREYAPRLVTQPSLTDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYVTGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRANRITWTVPVPTAMGLDVKPLPEPPSERERGEDQRSRHVRQGPRRIAVANFNGIPQDPEAAEVRAKLIKSLAADGITPNKGKDGRIRSGILMHNSVACFAKGGKLAMSILYHRPKYIGVGNEVFVELDDEEAVTGEVVDGKVGGGSW 1725
MRGD GVLRQVLAPGVEWRGPLG+N GLAKVEEELRGLG+LL+ PR+SV AS DGA+RLEW+ SGTWPLPWLPRFIV+GAST++TG DGKVV ITDTWEGNP++LGL+HLVPGFWDIWHQLGSPPAEK PYRV+KR LGY IREYAPR+ TQPSL DYSNSREIRKALILPGFCHDG++KTSGRKPDEYYVTGP+EVAIQPFIATGNFPNGTWFNGT REASQSRRANRITWTVPVPTAMGLD LPEPPSERERGEDQRSRHVRQG RRIAV NFNGIPQDPEAAEVRAKL+K LAADG+ P KG DGR+RSGILM+NSVACF K GKLAMSILYHRPKYIG+GNEVFVELD EEAVT EVV+GKVGGG+W
Sbjct: 1 MRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLNAPRLSVFASKDGAKRLEWVASGTWPLPWLPRFIVKGASTLQTGPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPVPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMYNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVGGGTW 373
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA) HSP 1 Score: 313 bits (803), Expect = 1.290e-96 Identity = 160/382 (41.88%), Postives = 237/382 (62.04%), Query Frame = 1
Query: 556 ELPLTLDKALEEGVNRAMRGDTGVLRQVLAPGVEWRGPLGSNVGLAKVEEELRGLGNLLSEPRMSVSASL---DGARRLEWIGSGTWPLPWLPRFIVRGASTIET-GADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVIKRTLGYSIREYAPRLVTQPSLTDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYVTGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRANRITWTVPVPTAMGLDVKPLPEPPSERERGEDQRSRH------VRQGPRRIAVANFNGIPQDPEAAEVRAKLIKSLAADGITPNKGKDGRIRSGILMHNSVACFAKGGKLAMSILYHRPKYIGVGNEVFVELDD 1671
E PL L AL G+NRA+RGD+ VLRQVL+ W+GP+ S K+EE+LR +G+ LS+PR +V+++ D LEW+ S TWPLPW PR +++G + + A G+++ + DTWE P+ ++HL+PGFWDIW+Q SP AE+ P++V++R GY + ++APRLV +P+L D +NSR+ R A +LP F + T GR P++Y+ T P+E I P I T N NG+ S RANRITW V VP + GL+ +P+P RGE + RQ R +AVAN+NG QD EA E+RAKL++ L+ D G +GR ++G + + F K G++++++ +RPK +G GN+V+VEL++
Sbjct: 21 ETPLELGPALTLGLNRAIRGDSSVLRQVLSDNCSWKGPVASYDSRNKIEEDLRNVGSFLSDPRFTVASTTPTGDATYSLEWLASATWPLPWTPRIVIQGRTLVRLDSAGGRIISMEDTWEEAPVQALIRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLVLRPTLVDRTNSRQARMAYVLPDFSFTSSVNTRGRVPEKYFTTSPIEAEITPLIETNTVSNE---NGSL--GSVQTRANRITWAVQVPASFGLEAGAMPDP-----RGEGYNPLNGDAIEFERQDRRVVAVANYNGSVQDKEAVELRAKLLEQLSMDKAKVALGPEGRPKAGFMSFDGKVGFNKQGRVSIAVYEYRPKILGKGNKVYVELEE 392
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: A0A6V1P7S5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7S5_HETAK) HSP 1 Score: 201 bits (510), Expect = 1.400e-53 Identity = 121/370 (32.70%), Postives = 183/370 (49.46%), Query Frame = 1
Query: 586 EEGVNRAMRGDTGVLRQVLAPGVEWRGPLGSNVGLAKVEEELRGLGNLLSEPRMSVSASL----DGAR----RLEWIGSGTWPLPWLPRFIVRGASTIETGADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVIKRTLGYSIREYAPRLVTQPSLTDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYVTGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRANRITWTVPVPTAMGLDVKPLPEPPSERERGE--DQRSRHVRQGPRRIAVANFNGIPQDPEAAEVRAKLIKSLAADGITPNKGKDGRIRSGILMHNSVACFAKGGKLAMSILYHRPKYIGVGNEVFVEL 1665
E +N+A++ + LR+ G W P+ + A +E+ L +GN L +PR++V A+ DG ++W+ + TWPLPW P V G + + +G++ DTWE +P + L P FWD +H PPAE YRV R GY +R+YAPRLV D N+RE R A LP + G+ P+ +YVT P+EV+ + + +E ++ N I W V +P A GL++ LP+P E D R H GPRR+AVA FNG QD ++ RA+L+ DG G GR + L +++ F + G L ++ + P++ GNE+ +EL
Sbjct: 71 ENAINQALKTNLDPLRKFAVSGATWDNPVEAQKDRAGMEKLLLDVGNFLEDPRLTVHAARARGGDGGGGALVEVDWLKTATWPLPWRPPVQVFGRTVLRLDGEGRLAAAADTWEQSPYQVALGQCRPRFWDFYHFKAFPPAEFPAYRVAARGEGYEVRDYAPRLVVVGRTLDRVNTRETRAARTLPESMFSCTISMIGKIPERFYVTSPIEVSFRGKML--------------KEGDAQKKVNAIQWKVGLPKAFGLELGGLPDPDGRETAQEMQDDRVWHQVDGPRRVAVARFNGQNQDVGVSKARAELLAKAQEDGHELLLGNSGRPQFSFLQNDAKVGFKRTGGLGVA--GYEPRW-DTGNEIALEL 423
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: A0A8J2SS52_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SS52_9STRA) HSP 1 Score: 160 bits (406), Expect = 2.980e-39 Identity = 122/380 (32.11%), Postives = 183/380 (48.16%), Query Frame = 1
Query: 577 KALEEGVNRAMRGDTGVLRQVLAPGVEWRGPLGSNVGLAKVEEELRGLGNLLSEPRMSVSASLDGARRLEWIGSGTWPLPWLPRFIVRGASTIETGADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVI---KRTLGYSIREYAP-RLVTQPSLTDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYV--TGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRANRITWTVPVPTAMGLDVKPLPEPPSERERGEDQRSRHVRQGP---------RRIAVANFNGIPQDPEAAEVRAKLIKSLAADGITPNKGKDGRIRSGILMH-NSVACFAKGGKLAMSILYHRPKYIGV-GNEVFVEL 1665
KAL+E A+RGD+ LR+ LA V W+ LG G + + G+ +PR+ V +S D R W+ SGT P+ W PR +V G +TI T DGKV + D W+ +P +GLQ + P FWD++ +P AE V+ K ++G + +P RL SL D SNSR+ R A LP F D R P + T P+ V+I+ P R R+TW +P+PTA+GLD LPE P + E + V + P + A+++G PQD AA +R L ++ A G++ G +G +L + ++ G LA ++ + P ++ V GNE+ VE+
Sbjct: 80 KALDE----ALRGDSTHLREELASDVVWQHGLGEAKGAKAALKLVEEAGDFYDDPRLDVLSSSDNEFR--WLASGTQPVQWSPRVLVHGTTTI-TRQDGKVTRVIDRWDSSPTDIGLQQVAPKFWDVFDLWATPVAETPCEEVLNEFKFSMGQARLVRSPERLCLVCSLDDVSNSRKQRVASALPDFVFLADT----RSPTDVIAATTTPLSVSIEALPRVDGEP----------------RKRRVTWALPLPTALGLDFASLPELPRKAELNDGGLELGVAENPSLTYALQPAKLYVCASYSGDPQDAAAAPLRKALAEAAVAQGLSLVPGANGGAAPAVLRKWRAKLGYSDVGALAYAMESNAPSWVSVDGNELCVEV 432
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Match: A0A8J5XYQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYQ7_DIALT) HSP 1 Score: 112 bits (280), Expect = 7.770e-23 Identity = 99/337 (29.38%), Postives = 150/337 (44.51%), Query Frame = 1
Query: 721 GNLLSEPRMSV-SASLDGAR--RLEWIGSGTWPLPWLPRFIVRGASTIE-----TGADGKVVGITDTWEGNPLSLGLQHLVPGFWDIWHQLGSPPAEKQPYRVIKRTLGYSIREYAPRLVTQPSL---TDYSNSREIRKALILPGFCHDGDLKTSGRKPDEYYVTGPVEVAIQPFIATGNFPNGTWFNGTAREASQSRRAN---RITWTVPVPTAMGLDVKPLPEPPSERERGEDQRSRHVRQGPRRIAVANFNGIPQDPEAAEVRAK-LIKSLAADGITPNKGKDGRIRSGILMHNSVACFAKGGKLAMSILYHRPKYIGVG-----NEVFVELDD 1671
G L +P + V S S+ GA R+EW+ SGTWPLPW PR + G+S +E TGA VV +TDT + +P+ + + L+P + D++ SPPAE +PYRV++ Y +R P + + +L T S++ A +LPGF G KP V A++P T R+A WTVP+P+ +G D LP P E+ ++ R +A G + A A+ L L ADG+ G R +N A F G+LA++ +Y G NE+ V++++
Sbjct: 106 GKFLVDPMLEVLSVSVTGASSARVEWLASGTWPLPWRPRALALGSSALELETLPTGAV-HVVRVTDTLQTSPVDVLVSQLLPNWEDVYSLYNSPPAELRPYRVVRAARTYELRWMPPGIALRCALRSATYPSSATHKLVAPLLPGFAFTG-------KP---LNNRAVWSAVRPI--------------TVEYDQSDRKAGGPCAYRWTVPLPSRLGTDRSALPPLPPVESGVEEME--YIALPARYVAARRLAGALESDGAVLAEAEQLAAQLRADGVRTVDGTPSRAAFQFCQYNFKAGFNLAGQLAIA------QYQGTAQPLRRNEILVDIEE 409 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16571.1 >prot_C-linearis_contig9.16571.1 ID=prot_C-linearis_contig9.16571.1|Name=mRNA_C-linearis_contig9.16571.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=542bp MVPRRRKLMVGALTLLSCSGPTLSFLPSTTHTAAVSSSRGLPTAAVDPARback to top mRNA from alignment at C-linearis_contig9:1474396..1478706+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16571.1 ID=mRNA_C-linearis_contig9.16571.1|Name=mRNA_C-linearis_contig9.16571.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4311bp|location=Sequence derived from alignment at C-linearis_contig9:1474396..1478706+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1474396..1478706+ >mRNA_C-linearis_contig9.16571.1 ID=mRNA_C-linearis_contig9.16571.1|Name=mRNA_C-linearis_contig9.16571.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3252bp|location=Sequence derived from alignment at C-linearis_contig9:1474396..1478706+ (Chordaria linearis ClinC8C monoicous)back to top |