mRNA_C-linearis_contig9.16568.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16568.1
Unique NamemRNA_C-linearis_contig9.16568.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1444952..1446433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.6623147-CDS-C-linearis_contig9:1444951..14450711622930701.6623147-CDS-C-linearis_contig9:1444951..1445071Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1444952..1445071 +
1690881204.8900301-CDS-C-linearis_contig9:1444951..14450711690881204.8900301-CDS-C-linearis_contig9:1444951..1445071Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1444952..1445071 +
1622930701.6814127-CDS-C-linearis_contig9:1446328..14464331622930701.6814127-CDS-C-linearis_contig9:1446328..1446433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1446329..1446433 +
1690881204.9002697-CDS-C-linearis_contig9:1446328..14464331690881204.9002697-CDS-C-linearis_contig9:1446328..1446433Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1446329..1446433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16568.1prot_C-linearis_contig9.16568.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1444952..1446433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16568.1

>prot_C-linearis_contig9.16568.1 ID=prot_C-linearis_contig9.16568.1|Name=mRNA_C-linearis_contig9.16568.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
EVLACCAEGGQRAQEATAALNHFHIKVTVSSRLAEGNQRPVANNSNPRQQ
RRDLLLTFPGRLLGRGGAGGQVGG*
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mRNA from alignment at C-linearis_contig9:1444952..1446433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16568.1 ID=mRNA_C-linearis_contig9.16568.1|Name=mRNA_C-linearis_contig9.16568.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1482bp|location=Sequence derived from alignment at C-linearis_contig9:1444952..1446433+ (Chordaria linearis ClinC8C monoicous)
GAAGTTTTGGCTTGCTGCGCGGAAGGGGGACAGAGGGCGCAGGAGGCAAC
GGCAGCCTTGAATCATTTCCACATTAAGGTAACGGTATCAAGTCGCCTCG
CCGAAGGCAACCAGCGTCCGGTGAGCTTGAGGAGAGGATAGGGTACCGTC
ACATGCAAGTGGACGTCAAAATTTGAATTTGCTGTGCCCGAACACCCCCG
TTACACCATTGCGCTGCTGTTGGCTGCGGCTACCGATTGTCATCGACTCT
CGAGGAAGTATGTGTCCTTGCTCGCGGCAGCCGACCCTTTTGCGGCATCA
GCTGATTGAACCTAAGTCCAGAAGTTTTCTGGGATCGGTTTGTAGAGACA
GGCAGTCAGTTGAGACCTTTCCGGCCCCTGGTCCCTGAGCGTTTGTCGAG
ACAGCTCTTTGCTGCTGCAGAGCGGCATCGCGTGTTGGAAGCGGCCTTGT
GGTGGGGCATCATTTGTAGGCTAAGAACAGAAAAAGACGAGAAGGTACAA
CCCCGCCTCGTGCGTAGCCGTTGTCGGAAGGAAAAAGCCGCGTCACACTG
CAAATTCGCGAGAGAAAAGCCTCGTTTACCCCCTCTCTCTCCACCATCGT
CTCTCCCCCGTGGCGCTGAGACGTGCATGTTATCCAACGATGTGCGCGTT
GCGCATATGGAAAGGACAAGGCGATCGTACAAAGTATCTAGGTGGATGGA
TGATCCCCTCCTCTTCGCATGTATCGCAAATAAAGGAGAACAAATAGTCT
AGTACTGACTCTGGAGTTAGCCTGCACCGGCAGCAGTTTGTGGCATTGCT
CTTGCGTCCTCTCACACACGCGCCCGTGTCGGAGGCGGCTCGGAGACAGA
AAACTGTGCTTCGCGCACGCGCTGGCGGTTGCGCGGTTGCCCCCCCCCCC
CCGACCTACAGATGATGATTGGATCGGACGAAAGATTTCTCTGCAAGTTT
CCTTGTTTATATTGTCAGTTCTGACGACCTCAGTTGTCGAGTTTGCGCAT
GGTTGAGCACAACGGCGGTGTCTTTCTTTTCCCCTGTCAAGGGTTAGGGT
TTCCACTGGCCCGCGTGGGTGAGTTTTCCAGCACCCCTCCTTGTGCTGCT
CCGTGTCACCGAAACGCTAGATACCACGGTCGGGTGTTTACGCCACAGAT
CTGTGGGGCTGAGTTATGATGCCCCCCACCAGGAGGGTTTAGTTTTTCTC
GACGAACGCGTTGGATCCTGCTGCTCGCTTGGGATGACTACAGAGGGACA
CGAAGGCCCATCCCACCACCCTAAATACCCTCCTGCACATGACACATGAT
AGATTCTGAAAAAAACAGCCGCGACACGCGCACGCTCCCCTCCCTACCAC
CACCGCCCGTCGCAAAATGGTGTGCAGGTTGCCAACAACAGCAACCCCCG
ACAACAAAGGCGGGACTTGCTGCTTACCTTTCCTGGGAGGCTGCTGGGAA
GGGGGGGCGCTGGGGGGCAGGTGGGCGGGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1444952..1446433+

>mRNA_C-linearis_contig9.16568.1 ID=mRNA_C-linearis_contig9.16568.1|Name=mRNA_C-linearis_contig9.16568.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at C-linearis_contig9:1444952..1446433+ (Chordaria linearis ClinC8C monoicous)
GAAGTTTTGGCTTGCTGCGCGGAAGGGGGACAGAGGGCGCAGGAGGCAAC
GGCAGCCTTGAATCATTTCCACATTAAGGTAACGGTATCAAGTCGCCTCG
CCGAAGGCAACCAGCGTCCGGAAGTTTTGGCTTGCTGCGCGGAAGGGGGA
CAGAGGGCGCAGGAGGCAACGGCAGCCTTGAATCATTTCCACATTAAGGT
AACGGTATCAAGTCGCCTCGCCGAAGGCAACCAGCGTCCGGTTGCCAACA
ACAGCAACCCCCGACAACAAAGGCGGGACTTGCTGCTTACCTTTCCTGGG
AGGCTGCTGGGAAGGGGGGGCGCTGGGGGGCAGGTGGGCGGGTAGGTTGC
CAACAACAGCAACCCCCGACAACAAAGGCGGGACTTGCTGCTTACCTTTC
CTGGGAGGCTGCTGGGAAGGGGGGGCGCTGGGGGGCAGGTGGGCGGGTAG
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