mRNA_C-linearis_contig9.16557.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16557.1
Unique NamemRNA_C-linearis_contig9.16557.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1340041..1342798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1121
Cds size1119
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16557.1prot_C-linearis_contig9.16557.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1340041..1342797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.3908343-CDS-C-linearis_contig9:1340040..13407371622930701.3908343-CDS-C-linearis_contig9:1340040..1340737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1340041..1340737 +
1690881204.7752779-CDS-C-linearis_contig9:1340040..13407371690881204.7752779-CDS-C-linearis_contig9:1340040..1340737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1340041..1340737 +
1622930701.4102416-CDS-C-linearis_contig9:1341205..13413041622930701.4102416-CDS-C-linearis_contig9:1341205..1341304Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1341206..1341304 +
1690881204.7838435-CDS-C-linearis_contig9:1341205..13413041690881204.7838435-CDS-C-linearis_contig9:1341205..1341304Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1341206..1341304 +
1622930701.427895-CDS-C-linearis_contig9:1341759..13418851622930701.427895-CDS-C-linearis_contig9:1341759..1341885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1341760..1341885 +
1690881204.7936435-CDS-C-linearis_contig9:1341759..13418851690881204.7936435-CDS-C-linearis_contig9:1341759..1341885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1341760..1341885 +
1622930701.4414022-CDS-C-linearis_contig9:1342242..13423441622930701.4414022-CDS-C-linearis_contig9:1342242..1342344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1342243..1342344 +
1690881204.802776-CDS-C-linearis_contig9:1342242..13423441690881204.802776-CDS-C-linearis_contig9:1342242..1342344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1342243..1342344 +
1622930701.4673781-CDS-C-linearis_contig9:1342702..13427971622930701.4673781-CDS-C-linearis_contig9:1342702..1342797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1342703..1342797 +
1690881204.8116333-CDS-C-linearis_contig9:1342702..13427971690881204.8116333-CDS-C-linearis_contig9:1342702..1342797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1342703..1342797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16557.1

>prot_C-linearis_contig9.16557.1 ID=prot_C-linearis_contig9.16557.1|Name=mRNA_C-linearis_contig9.16557.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=373bp
RSWLAVSPLPRPLATYNRSGGDCAKDAKPTKKKTKLEGRCTPTARYSREV
KGALAAVERAVVEAVTKSRPNGRAIAIFQSGDVAKSNADQQKCAVDISSQ
HGMSAGSVWSVRVNHLSLCLGEDTDSAEGVARGFVNLSEATRLPGEEGPL
SQEEKEVATGNLMLRFGIHFAENEARGPGEEDVEWSKNHTQRVEKMLGGI
GLGLEKAREIMAEVGPALLRKKTLGFEERSRGANLCNIDGCACTNADPKE
CTCKGHSHLKNSSVGARTATVRGEKVTVSEAAWEGRATPTSLERKAMAQI
SDDSSRGGRYGVDEDVWDGRRQPNAEEQKLMKRKREDSSKGANSCHEDGC
SCEKAGAGCTCVGHLHVKNSSVG
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mRNA from alignment at C-linearis_contig9:1340041..1342798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16557.1 ID=mRNA_C-linearis_contig9.16557.1|Name=mRNA_C-linearis_contig9.16557.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2758bp|location=Sequence derived from alignment at C-linearis_contig9:1340041..1342798+ (Chordaria linearis ClinC8C monoicous)
CGATCCTGGCTTGCGGTCTCCCCCCTTCCAAGGCCTCTAGCGACCTACAA
CCGCAGCGGTGGCGACTGCGCCAAGGATGCCAAGCCCACCAAGAAGAAGA
CGAAGCTGGAGGGGAGATGCACTCCAACCGCGAGGTACAGCCGGGAGGTG
AAGGGAGCCTTGGCCGCCGTTGAGCGGGCGGTAGTGGAGGCGGTGACAAA
GTCGAGGCCAAATGGCCGGGCTATCGCGATCTTCCAGTCCGGAGACGTTG
CCAAGAGCAACGCCGACCAACAAAAGTGCGCCGTCGACATCTCGAGTCAG
CACGGCATGTCCGCCGGGAGCGTATGGTCGGTGAGGGTCAACCATCTGTC
CTTGTGCCTCGGGGAGGACACGGACTCGGCAGAGGGCGTAGCAAGGGGGT
TTGTCAACCTCTCCGAGGCTACGCGTCTTCCGGGCGAGGAGGGCCCTCTA
AGCCAGGAGGAGAAGGAGGTCGCCACTGGGAACCTCATGCTCCGGTTTGG
AATACATTTCGCGGAGAACGAGGCGCGCGGCCCGGGGGAGGAGGACGTCG
AGTGGTCGAAGAACCACACACAGCGCGTGGAGAAGATGCTTGGAGGGATC
GGTCTCGGACTCGAGAAGGCGCGGGAGATCATGGCCGAGGTCGGACCGGC
GCTCCTGAGGAAGAAGACGCTCGGCTTCGAAGAACGTAGTCGAGGAGGTG
GGTGTCGCTGCTGCTATACGAGCACGTTGTTGTTGTTGTTGTATGCAAAC
CCCGTGCTCGATGCATCTGTTTTCAGCCAAATCCCGTCACCCCCACCCCC
ACACGCAGGCAAGGCGGACTACACCGCCAAACAGCGCGGTGAGGGTTGTG
TATGAATGAATCAATGTTGTTGTTTGTTGTGGTCGAGTAACTTCCTCTGT
TCCTGTTTCGTCCCTTCCCAACCCGCCACCTCTCTTTCCTGGTGTGTCAT
TCACCCGACGCAACCAAGGCATCAACGCTCCCTGCTCTGTAGAATGTGGT
GATATGGTTGCGTGTAATGGACCCTTCGAATGCAATGTTGTGGCCTCGGG
GTCAAAGATTAAAAATTTTATGCGGTTGTTGTTGTTGGTTCTGTTGCTCT
CTTTTTAAACCCTCACGACCTACTCTTCTTCTTGTGTCGCGCGTATTCGA
TAACCATATTTTCAGCAAACTTGTGCAACATCGACGGCTGTGCGTGCACG
AATGCCGACCCCAAGGAGTGCACCTGCAAAGGTCACTCCCACCTGAAGAA
CAGCTCGGTCGGCGGTGAGATTGCGGTTATATTCTGAACAGGTTGTTGTT
GATTCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCTTACAGTC
GATTCATTTTCGCCCCCGTCTTTCCTGGTGTGCCCCGCACCCCACGTACC
CACGGCACCCCCGCTGGCTGCTCCATAGAAAATATTGATAACATGGCGTG
CAATGGACCCTTCCAATGAAATGGAAAGTTGTGTGGCTTATTTTGCTTAG
TTGTTGTTGTTGTTATTTTTGATGATCATGGTAAATGATGGCAAACCCCA
TTCAGTCATAAGCCCTTCAACGACTGGATGACCGTTTGAATGAAATGAAT
TGTTGTGGCCTCTTGGGTCAAAGATGTGTTGTTGCGTTCCGCGCAGGCAC
CTGCTGCACGAGTCGACAACGTCTAGCATTTATTTTCCCCATAATCTCGT
TCGTTCCTCGTTTTTGCAGCGCGGACGGCAACCGTGCGCGGCGAGAAGGT
CACGGTGTCCGAGGCCGCGTGGGAGGGAAGAGCTACCCCGACATCCCTCG
AGAGAAAGGCGATGGCGCAGATCTCGGACGACAGCTCTCGCGGAGGCAAG
CAGTTGTTGTTGTTGTTGTTGTTGTTTCCGTCCTCTGTGACCGTTCCATG
CCGACCCACCCCCGTCTTTCCTGGTGTGCCTTTCACCCCACGCAACCAGG
GCATCCCCGCTCCCTGCTCCATAGAATATCTTGATACCGTCGCGTGCGTC
TGACCCGTTGAATGAGATGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGACGATGATG
ATGGCCCTTGTAGCCTGTGCTCTCCCCGTTCTGCGTTTCTCCTGCCCTTC
CGCGAAGTCCACGTGTTAAGTTCATTCCGTTAATCTTCGTCCCGATTGTC
AGGGCGATATGGAGTTGACGAAGACGTGTGGGACGGGCGAAGGCAGCCCA
ACGCTGAAGAGCAGAAACTGATGAAGAGGAAGAGGGAGGACTCTTCCAAG
GGTGGTGAGGCTCGGCTGAATCTTGGGGTCGAAAATCCCACTTCGTTCTT
GTTGTAAAAAGTCGAGCCATTTCCAACCTCTCTTTCCTGGTGTGCCCCGC
ACCCCATTTACTCATGTCACCCCCGCTCCCTGCTCCACTGAGTATAAGAA
TAACGTGGCGTGCGTCTGACCCGTTGAATGAAACTAAATGCTGTGGCCTC
GGGGTCAAAGATTCGATTTTCAGCTTATCGTTGCCTCTGCTGTTGTTGCT
GTGGTTGTTGTTGTTGTTGGTGGTGGTGGTGTTCTTTTTTCTGTTGCTCT
CTAATCAAACCCTCGCGATCTACTCTTCTTGCGTCGCGTGTATTCAATAC
TCATATATTCAGCCAACTCTTGCCACGAGGACGGGTGTTCTTGCGAGAAG
GCGGGCGCGGGATGCACCTGCGTCGGCCACTTGCACGTGAAGAACAGCAG
CGTCGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1340041..1342798+

>mRNA_C-linearis_contig9.16557.1 ID=mRNA_C-linearis_contig9.16557.1|Name=mRNA_C-linearis_contig9.16557.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at C-linearis_contig9:1340041..1342798+ (Chordaria linearis ClinC8C monoicous)
CGATCCTGGCTTGCGGTCTCCCCCCTTCCAAGGCCTCTAGCGACCTACAA
CCGCAGCGGTGGCGACTGCGCCAAGGATGCCAAGCCCACCAAGAAGAAGA
CGAAGCTGGAGGGGAGATGCACTCCAACCGCGAGGTACAGCCGGGAGGTG
AAGGGAGCCTTGGCCGCCGTTGAGCGGGCGGTAGTGGAGGCGGTGACAAA
GTCGAGGCCAAATGGCCGGGCTATCGCGATCTTCCAGTCCGGAGACGTTG
CCAAGAGCAACGCCGACCAACAAAAGTGCGCCGTCGACATCTCGAGTCAG
CACGGCATGTCCGCCGGGAGCGTATGGTCGGTGAGGGTCAACCATCTGTC
CTTGTGCCTCGGGGAGGACACGGACTCGGCAGAGGGCGTAGCAAGGGGGT
TTGTCAACCTCTCCGAGGCTACGCGTCTTCCGGGCGAGGAGGGCCCTCTA
AGCCAGGAGGAGAAGGAGGTCGCCACTGGGAACCTCATGCTCCGGTTTGG
AATACATTTCGCGGAGAACGAGGCGCGCGGCCCGGGGGAGGAGGACGTCG
AGTGGTCGAAGAACCACACACAGCGCGTGGAGAAGATGCTTGGAGGGATC
GGTCTCGGACTCGAGAAGGCGCGGGAGATCATGGCCGAGGTCGGACCGGC
GCTCCTGAGGAAGAAGACGCTCGGCTTCGAAGAACGTAGTCGAGGAGCGA
TCCTGGCTTGCGGTCTCCCCCCTTCCAAGGCCTCTAGCGACCTACAACCG
CAGCGGTGGCGACTGCGCCAAGGATGCCAAGCCCACCAAGAAGAAGACGA
AGCTGGAGGGGAGATGCACTCCAACCGCGAGGTACAGCCGGGAGGTGAAG
GGAGCCTTGGCCGCCGTTGAGCGGGCGGTAGTGGAGGCGGTGACAAAGTC
GAGGCCAAATGGCCGGGCTATCGCGATCTTCCAGTCCGGAGACGTTGCCA
AGAGCAACGCCGACCAACAAAAGTGCGCCGTCGACATCTCGAGTCAGCAC
GGCATGTCCGCCGGGAGCGTATGGTCGGTGAGGGTCAACCATCTGTCCTT
GTGCCTCGGGGAGGACACGGACTCGGCAGAGGGCGTAGCAAGGGGGTTTG
TCAACCTCTCCGAGGCTACGCGTCTTCCGGGCGAGGAGGGCCCTCTAAGC
CAGGAGGAGAAGGAGGTCGCCACTGGGAACCTCATGCTCCGGTTTGGAAT
ACATTTCGCGGAGAACGAGGCGCGCGGCCCGGGGGAGGAGGACGTCGAGT
GGTCGAAGAACCACACACAGCGCGTGGAGAAGATGCTTGGAGGGATCGGT
CTCGGACTCGAGAAGGCGCGGGAGATCATGGCCGAGGTCGGACCGGCGCT
CCTGAGGAAGAAGACGCTCGGCTTCGAAGAACGTAGTCGAGGAGCAAACT
TGTGCAACATCGACGGCTGTGCGTGCACGAATGCCGACCCCAAGGAGTGC
ACCTGCAAAGGTCACTCCCACCTGAAGAACAGCTCGGTCGGCGCAAACTT
GTGCAACATCGACGGCTGTGCGTGCACGAATGCCGACCCCAAGGAGTGCA
CCTGCAAAGGTCACTCCCACCTGAAGAACAGCTCGGTCGGCGCGCGGACG
GCAACCGTGCGCGGCGAGAAGGTCACGGTGTCCGAGGCCGCGTGGGAGGG
AAGAGCTACCCCGACATCCCTCGAGAGAAAGGCGATGGCGCAGATCTCGG
ACGACAGCTCTCGCGGAGCGCGGACGGCAACCGTGCGCGGCGAGAAGGTC
ACGGTGTCCGAGGCCGCGTGGGAGGGAAGAGCTACCCCGACATCCCTCGA
GAGAAAGGCGATGGCGCAGATCTCGGACGACAGCTCTCGCGGAGGGCGAT
ATGGAGTTGACGAAGACGTGTGGGACGGGCGAAGGCAGCCCAACGCTGAA
GAGCAGAAACTGATGAAGAGGAAGAGGGAGGACTCTTCCAAGGGTGGGCG
ATATGGAGTTGACGAAGACGTGTGGGACGGGCGAAGGCAGCCCAACGCTG
AAGAGCAGAAACTGATGAAGAGGAAGAGGGAGGACTCTTCCAAGGGTGCC
AACTCTTGCCACGAGGACGGGTGTTCTTGCGAGAAGGCGGGCGCGGGATG
CACCTGCGTCGGCCACTTGCACGTGAAGAACAGCAGCGTCGGCCCAACTC
TTGCCACGAGGACGGGTGTTCTTGCGAGAAGGCGGGCGCGGGATGCACCT
GCGTCGGCCACTTGCACGTGAAGAACAGCAGCGTCGGC
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