mRNA_C-linearis_contig9.16554.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16554.1
Unique NamemRNA_C-linearis_contig9.16554.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A6H5JKJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.870e-28
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:   37 ARCFRAIPT---ARSMLHLSRNRTPSTTAGVADLLPKA-ACPPRQASVAELLAKLVGQTGVVRADTLGCSSARNGELSAVLPKLEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIKNGP 393
            ARC RA+P    ARSM+ LSRN       GV   +P A ACP       +LLA LV Q    R D +  ++A  G+   V+P +EAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNII+NGP
Sbjct:    7 ARCLRAVPAVRAARSMVALSRNNV----GGVYQQVPVAPACPQP-----DLLASLVRQLDGCRVDGIMLNAAAQGDFLPVVPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIRNGP 120
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A7S0W7F3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7F3_9CRYP)

HSP 1 Score: 52.4 bits (124), Expect = 2.950e-6
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            +EA+NRNARRPKKANHGKRP SHVGRR+RR
Sbjct:   70 VEAMNRNARRPKKANHGKRPNSHVGRRKRR 99
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A2R5GTF7_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTF7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.920e-6
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  205 VVRADTLGCSSARNGELSAVLPKLEAVNRNARRPKKANHGKRPCSHVGRRRRRR 366
            VV A+ L  SS    E+      L+ +NRNAR+PKKANHGKRPCSHV RR +RR
Sbjct:   55 VVHANPLQRSSLLQQEIET----LQMLNRNARKPKKANHGKRPCSHVRRREKRR 104
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A067CWA3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CWA3_SAPPC)

HSP 1 Score: 49.7 bits (117), Expect = 2.990e-5
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  256 SAVLPKLEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            S  +P ++ V RN+R+PKKANHGKRPCSHV RR RR
Sbjct:   61 SEPIPGMQLVGRNSRKPKKANHGKRPCSHVRRRSRR 96
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: W2R1K3_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2R1K3_PHYPN)

HSP 1 Score: 48.9 bits (115), Expect = 4.850e-5
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:  169 AELLAKLVGQTGVVRADTLGCSSARNGELSAVLP-KLEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            A LL  +  +  V  A      S  N   +   P  +E +NRNARRPKKANHGKRPCSH  RR++R
Sbjct:   18 ASLLPSIAARPAVAVAGVRSVPSTVNWFAAEETPIAMELLNRNARRPKKANHGKRPCSHHRRRQKR 83
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A484EF41_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF41_BRELC)

HSP 1 Score: 48.9 bits (115), Expect = 4.850e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            +E +NRNARRPKKANHGKRPCSH  RR++R
Sbjct:   54 MELLNRNARRPKKANHGKRPCSHFRRRQKR 83
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A7S0EIZ0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EIZ0_9CRYP)

HSP 1 Score: 50.4 bits (119), Expect = 6.180e-5
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRR 360
            +EA+NRNAR+P KANHGKRPCSH GR+RR
Sbjct:  131 MEAMNRNARKPNKANHGKRPCSHWGRKRR 159
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A3R7Z114_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7Z114_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.490e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            +E +NRNARRPKKANHGKRPCSH  RR++R
Sbjct:   43 MELLNRNARRPKKANHGKRPCSHHRRRQKR 72
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BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A225WHG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHG2_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 8.380e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            +E +NRNARRPKKANHGKRPCSH  RR++R
Sbjct:   48 MELLNRNARRPKKANHGKRPCSHHRRRQKR 77
[Close]
BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Match: A0A0P1AMW0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMW0_PLAHL)

HSP 1 Score: 48.1 bits (113), Expect = 8.760e-5
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  274 LEAVNRNARRPKKANHGKRPCSHVGRRRRR 363
            +E +NRNARRPKKANHGKRPCSH  RR++R
Sbjct:   51 MELLNRNARRPKKANHGKRPCSHHRRRQKR 80
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JKJ9_9PHAE1.870e-2857.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0W7F3_9CRYP2.950e-686.67Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A2R5GTF7_9STRA4.920e-657.41Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A067CWA3_SAPPC2.990e-566.67Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
W2R1K3_PHYPN4.850e-546.97Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A484EF41_BRELC4.850e-576.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S0EIZ0_9CRYP6.180e-579.31Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A3R7Z114_9STRA7.490e-576.67Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A225WHG2_9STRA8.380e-576.67Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A0P1AMW0_PLAHL8.760e-576.67Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1311469..1312380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003250.1
Exons2
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930731.6150823-CDS-C-linearis_contig9:1311468..13117801622930731.6150823-CDS-C-linearis_contig9:1311468..1311780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1311469..1311780 +
1690881220.2399442-CDS-C-linearis_contig9:1311468..13117801690881220.2399442-CDS-C-linearis_contig9:1311468..1311780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1311469..1311780 +
1622930731.6290255-CDS-C-linearis_contig9:1312296..13123801622930731.6290255-CDS-C-linearis_contig9:1312296..1312380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1312297..1312380 +
1690881220.250819-CDS-C-linearis_contig9:1312296..13123801690881220.250819-CDS-C-linearis_contig9:1312296..1312380Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1312297..1312380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16554.1prot_C-linearis_contig9.16554.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1311469..1312380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16554.1

>prot_C-linearis_contig9.16554.1 ID=prot_C-linearis_contig9.16554.1|Name=mRNA_C-linearis_contig9.16554.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=132bp
MAAAAAAAAAAAARCFRAIPTARSMLHLSRNRTPSTTAGVADLLPKAACP
PRQASVAELLAKLVGQTGVVRADTLGCSSARNGELSAVLPKLEAVNRNAR
RPKKANHGKRPCSHVGRRRRRRRKNIIKNGP*
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mRNA from alignment at C-linearis_contig9:1311469..1312380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16554.1 ID=mRNA_C-linearis_contig9.16554.1|Name=mRNA_C-linearis_contig9.16554.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=912bp|location=Sequence derived from alignment at C-linearis_contig9:1311469..1312380+ (Chordaria linearis ClinC8C monoicous)
ATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGATGCTTCCG
GGCAATCCCCACAGCGAGATCCATGTTGCATCTGTCTAGAAACAGGACTC
CTTCTACAACTGCTGGCGTAGCAGACCTGCTTCCCAAAGCTGCCTGCCCT
CCGCGTCAGGCATCGGTGGCGGAGTTATTGGCGAAGCTCGTGGGGCAGAC
GGGTGTGGTTAGGGCGGATACGTTGGGGTGCAGTTCAGCTCGGAACGGGG
AGCTCTCAGCGGTATTGCCCAAGCTGGAAGCGGTGAATCGCAACGCGCGT
AGACCCAAGAAGGTGACAGACGCAGCCGTGGACCGTCCGCCGGCTTTGTG
CCGGGGAGGGTTTTGTTTAGAAACAGCCGGACAGGACCCTTTGTGTGCTT
GCAGCTCGTAGATACATGCATTTTGGTTTTTCGTGGTAGATACCTGCATT
TTACTGCTCTCACCGCGTAACGTTGATGCGGGTTGTGATGTTGCGACACC
TCCTCGCTTCCGCTCTCTCATCGCAGTACAGCAATCTCACCCCCGAATCA
GGACGTCCTTGTCTCCGAGGTACAAACACGGGTTGGTGGCGAACGTTGGG
AATGGTTTTCTTACGGAGTGTAGGAAACTTCTTTCTTGTTCATTTGACTT
GACAAAGACTACACACTCGAGTTCTCGGTCGTCCCTAAGGGTTCTCAACC
TGACCACGAAGTACAACCCCCGCTCGGCTTTTACCCCCCAAAGAATCACC
ACTTCTGCAGCGTCTATACTTCGTAGGTAAACATGAATGTTGATGTGTTC
TACATCCGGACTTGACCATCTCTCACAGGCGAATCACGGCAAACGGCCTT
GCTCTCATGTCGGACGAAGACGACGTCGCCGGCGGAAGAACATAATCAAG
AACGGCCCATGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:1311469..1312380+

>mRNA_C-linearis_contig9.16554.1 ID=mRNA_C-linearis_contig9.16554.1|Name=mRNA_C-linearis_contig9.16554.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at C-linearis_contig9:1311469..1312380+ (Chordaria linearis ClinC8C monoicous)
ATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGATGCTTCCG
GGCAATCCCCACAGCGAGATCCATGTTGCATCTGTCTAGAAACAGGACTC
CTTCTACAACTGCTGGCGTAGCAGACCTGCTTCCCAAAGCTGCCTGCCCT
CCGCGTCAGGCATCGGTGGCGGAGTTATTGGCGAAGCTCGTGGGGCAGAC
GGGTGTGGTTAGGGCGGATACGTTGGGGTGCAGTTCAGCTCGGAACGGGG
AGCTCTCAGCGGTATTGCCCAAGCTGGAAGCGGTGAATCGCAACGCGCGT
AGACCCAAGAAGATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ACGATGCTTCCGGGCAATCCCCACAGCGAGATCCATGTTGCATCTGTCTA
GAAACAGGACTCCTTCTACAACTGCTGGCGTAGCAGACCTGCTTCCCAAA
GCTGCCTGCCCTCCGCGTCAGGCATCGGTGGCGGAGTTATTGGCGAAGCT
CGTGGGGCAGACGGGTGTGGTTAGGGCGGATACGTTGGGGTGCAGTTCAG
CTCGGAACGGGGAGCTCTCAGCGGTATTGCCCAAGCTGGAAGCGGTGAAT
CGCAACGCGCGTAGACCCAAGAAGGCGAATCACGGCAAACGGCCTTGCTC
TCATGTCGGACGAAGACGACGTCGCCGGCGGAAGAACATAATCAAGAACG
GCCCATGAGCGAATCACGGCAAACGGCCTTGCTCTCATGTCGGACGAAGA
CGACGTCGCCGGCGGAAGAACATAATCAAGAACGGCCCATGA
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