mRNA_C-linearis_contig9.16546.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16546.1
Unique NamemRNA_C-linearis_contig9.16546.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1254878..1255452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16546.1prot_C-linearis_contig9.16546.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1254988..1255401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.686611-UTR-C-linearis_contig9:1254877..12549871622930705.686611-UTR-C-linearis_contig9:1254877..1254987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1254878..1254987 +
1690881206.7492437-UTR-C-linearis_contig9:1254877..12549871690881206.7492437-UTR-C-linearis_contig9:1254877..1254987Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1254878..1254987 +
1622930705.737253-UTR-C-linearis_contig9:1255401..12554521622930705.737253-UTR-C-linearis_contig9:1255401..1255452Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1255402..1255452 +
1690881206.7722762-UTR-C-linearis_contig9:1255401..12554521690881206.7722762-UTR-C-linearis_contig9:1255401..1255452Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1255402..1255452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.7118518-CDS-C-linearis_contig9:1254987..12554011622930705.7118518-CDS-C-linearis_contig9:1254987..1255401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1254988..1255401 +
1690881206.7632923-CDS-C-linearis_contig9:1254987..12554011690881206.7632923-CDS-C-linearis_contig9:1254987..1255401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1254988..1255401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16546.1

>prot_C-linearis_contig9.16546.1 ID=prot_C-linearis_contig9.16546.1|Name=mRNA_C-linearis_contig9.16546.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
MSTEYIMRDRIHLQKERRTNAKYYPRSKAAWIPMPTPSKTKQKQSDGDDL
GYTWPPKFEFRPPFLTCCCCCCCRHHQHLTFASAPLAVPVLAVLRLFLAL
LPEPVFLPISSKICLGSSAEINTPGVIAFARNSGLPP*
back to top

mRNA from alignment at C-linearis_contig9:1254878..1255452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16546.1 ID=mRNA_C-linearis_contig9.16546.1|Name=mRNA_C-linearis_contig9.16546.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at C-linearis_contig9:1254878..1255452+ (Chordaria linearis ClinC8C monoicous)
CCCCTCGCTGTAGGCCATGCCTAGGCCAAAGCCTTGCCAAGGCAGCGAGG
GGAAGAAGGAAGCTATTGTCTAAGATCTAGATATAAGTCTACATACTGTA
TAATAGATAAATGTCTACAGAGTATATTATGCGCGACCGCATCCATCTTC
AGAAAGAAAGGCGAACAAACGCGAAATACTATCCACGATCCAAGGCAGCT
TGGATCCCTATGCCAACACCAAGCAAAACAAAACAAAAACAATCCGACGG
TGATGATTTGGGCTACACGTGGCCTCCTAAATTCGAGTTTCGCCCGCCGT
TCCTGACGTGCTGCTGCTGCTGCTGCTGCCGGCATCATCAACATTTGACG
TTCGCGAGCGCCCCCCTCGCCGTCCCTGTGTTGGCCGTACTTCGCCTCTT
CCTCGCGCTGTTGCCGGAACCCGTTTTTTTACCAATCAGCTCCAAGATCT
GTCTGGGCTCATCAGCGGAAATAAATACTCCCGGAGTAATAGCGTTTGCT
CGAAATTCGGGACTACCGCCATGATCGGCACCATCGGCCCCGCCATGCGC
TTGGCTGATGTGGGCGGCCATGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1254878..1255452+

>mRNA_C-linearis_contig9.16546.1 ID=mRNA_C-linearis_contig9.16546.1|Name=mRNA_C-linearis_contig9.16546.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig9:1254878..1255452+ (Chordaria linearis ClinC8C monoicous)
ATGTCTACAGAGTATATTATGCGCGACCGCATCCATCTTCAGAAAGAAAG
GCGAACAAACGCGAAATACTATCCACGATCCAAGGCAGCTTGGATCCCTA
TGCCAACACCAAGCAAAACAAAACAAAAACAATCCGACGGTGATGATTTG
GGCTACACGTGGCCTCCTAAATTCGAGTTTCGCCCGCCGTTCCTGACGTG
CTGCTGCTGCTGCTGCTGCCGGCATCATCAACATTTGACGTTCGCGAGCG
CCCCCCTCGCCGTCCCTGTGTTGGCCGTACTTCGCCTCTTCCTCGCGCTG
TTGCCGGAACCCGTTTTTTTACCAATCAGCTCCAAGATCTGTCTGGGCTC
ATCAGCGGAAATAAATACTCCCGGAGTAATAGCGTTTGCTCGAAATTCGG
GACTACCGCCATGAATGTCTACAGAGTATATTATGCGCGACCGCATCCAT
CTTCAGAAAGAAAGGCGAACAAACGCGAAATACTATCCACGATCCAAGGC
AGCTTGGATCCCTATGCCAACACCAAGCAAAACAAAACAAAAACAATCCG
ACGGTGATGATTTGGGCTACACGTGGCCTCCTAAATTCGAGTTTCGCCCG
CCGTTCCTGACGTGCTGCTGCTGCTGCTGCTGCCGGCATCATCAACATTT
GACGTTCGCGAGCGCCCCCCTCGCCGTCCCTGTGTTGGCCGTACTTCGCC
TCTTCCTCGCGCTGTTGCCGGAACCCGTTTTTTTACCAATCAGCTCCAAG
ATCTGTCTGGGCTCATCAGCGGAAATAAATACTCCCGGAGTAATAGCGTT
TGCTCGAAATTCGGGACTACCGCCATGA
back to top