mRNA_C-linearis_contig9.16517.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16517.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI) HSP 1 Score: 344 bits (882), Expect = 5.130e-101 Identity = 349/615 (56.75%), Postives = 401/615 (65.20%), Query Frame = 2
Query: 2 AVATLHSEELSFVRRLFKNGDVKSDGRISVAEVVACVEQMDFIVDEPLEDLVRSVVPTAVEVDRLSLKDAIKVASAAKAQDKGSEAPKVPTVDRDDSLAELETSFTKQFLSGEIAADIIEEEPKAPSQGLGXXXXXXXXXXXXXXXXXXXXXXXXXXEAPEGSTSVPPPNIMAVSVDVPKRRQSMAGGYPAAPSSPRNTPRGQVKRGGSPSAM--AGPEP-VVVDDLPKRRSSVTRPGGGSLAGLQAESVPG--SGIYDDDVFTMPATPEMKKQNSEIQLLESVGSLSVEPVEASSVPKKRRSFTVSQSWLEAAAQESAKALEAKILGEAQQAXXXXXXXXXXXXXXX---VAACLFRLKDKVEHNAEIERAKXXAEKRKRAAALEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVQRGAEARQAAEMKAAEATERAEEAARA---------------------------------------RQEEDGIKEEARRALQAEAELLRSKLQEACEXXXXXXXXXXXXXXHKEAQELRQAXXXXXXXXKLVEXXXXXXXXXXXXXXXXXXXXKSWEKKFQALQREREEETQRAKEELGRAVEEAKEF 1705
A+ATL S+EL FVRR FK+GDVKSDGRI+VA+++AC++QMDFI++ +DL+RSVVP A++VDRLSL DAIKVA+AAK Q++GS P+ P + R+ SLAELE+SF K+ + GEI AD IEEEP+ PS G XXXXXXXXXXXXXXXXXXXXXXXX E P G S PPP + AV + VP RR+S+AG +P PSSP T RG S S+ G EP VVVD PKRR SV G GSL G++A+SVPG G DDD T+PA+PEM SE++LL+S GSL VEPV S+VP+ RRS TVSQSW EAAAQES KALEA+ L EA XXXXXXXXXXXXXX VA CL L DKV+H A+I A+ AE+R R AALEVE X XXXXXXXXXX L AE R AAE +AAEA ERAEEA R KE ARRALQAEAE LRSKLQEA E XXXXXXXXXXX R XXXXXXX XXXXXXXXXXXXXXX WE+KFQALQRERE+E QRA+ E+ RAVEEA+EF
Sbjct: 137 AMATLDSDELDFVRRQFKDGDVKSDGRINVAKLMACLKQMDFILEGSPKDLIRSVVPAAMDVDRLSLNDAIKVATAAKTQEQGSAPPQRPGIGREGSLAELESSFNKRIMLGEITADAIEEEPRVPSVGXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPAGIESAPPPAVAAVGLAVPVRRRSIAGNHPV-PSSPSTTAPWPTSRGSSFSSAHGQGQEPEVVVDKFPKRRMSVASSGSGSLKGIRADSVPGPGGGRGDDDDSTLPASPEMLTMTSEMELLDSAGSLGVEPVITSAVPR-RRSITVSQSWKEAAAQESVKALEAERLVEAXXXXXXXXXXXXXXXXXAEKVVAECLSSLADKVQHRADIAEAREEAEQRARDAALEVERAEAAAXRVEVETALRLAVXXXXXXXXXXSAREEADRLAAEAAEGRAAAETRAAEAAERAEEALRLVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGARRALQAEAEALRSKLQEAGEEAAXXXXXXXXXXXXXXXXXXRLMEXXXXXXXXXXXXXXXXXXXXXXXXXXARLEALVWEEKFQALQREREQEAQRARXEMERAVEEAREF 749
BLAST of mRNA_C-linearis_contig9.16517.1 vs. uniprot
Match: A0A6H5L292_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L292_9PHAE) HSP 1 Score: 169 bits (427), Expect = 6.790e-44 Identity = 138/275 (50.18%), Postives = 164/275 (59.64%), Query Frame = 2
Query: 119 MDFIVDEPLEDLVRSVVPTAVEVDRLSLKDAIKVASAAKAQDKGSEAPKVPTVDRDDSLAELETSFTKQFLSGEIAADIIEEEPKAPSQGLGXXXXXXXXXXXXXXXXXXXXXXXXXXEAPEGSTSVPPPNIMAVSVDVPKRRQSMAGGYPAAPSSPRNTPRGQVKRGGSPSAMAGPEP-VVVDDLPKRRSSVTRPGGGSLAGLQAESVPGSGIYDDDVF--TMPATPEMKKQNSEIQLLESVGSLSVEPVEASSVPKKRRSFTVSQSWLEAAAQ 934
MDFI++ EDL+RSVVP A++VDRLSL DAIKVA+AAK Q++GS P+ P + R+ SLAELE+SF KQ + GEI AD IEEEP+ PS G XXXXXXXXXXXXX P I+ P A S ++ GQ G EP VVVD PKRR S+ GGGSL GL+A+SVPG T+PA+PEM K SE++LL+S GSL VEPV S+VPK RRS TVSQSW EAAAQ
Sbjct: 1 MDFILEGSPEDLIRSVVPAAMDVDRLSLNDAIKVATAAKTQEQGSAPPQRPGIGREGSLAELESSFNKQIMLGEITADAIEEEPRVPSVGXXXXXXXXXXXXXXXNQA---------------------PCII-----------------PTAGGSSFSSGHGQ-----------GQEPEVVVDKFPKRRMSMASSGGGSLKGLRADSVPGPWXXXXXXXXSTLPASPEMLKMTSEMELLDSAGSLGVEPVITSAVPK-RRSITVSQSWKEAAAQ 225 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16517.1 >prot_C-linearis_contig9.16517.1 ID=prot_C-linearis_contig9.16517.1|Name=mRNA_C-linearis_contig9.16517.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=633bp MDFIVDEPLEDLVRSVVPTAVEVDRLSLKDAIKVASAAKAQDKGSEAPKVback to top mRNA from alignment at C-linearis_contig9:1032906..1052233+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16517.1 ID=mRNA_C-linearis_contig9.16517.1|Name=mRNA_C-linearis_contig9.16517.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=19328bp|location=Sequence derived from alignment at C-linearis_contig9:1032906..1052233+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1032906..1052233+ >mRNA_C-linearis_contig9.16517.1 ID=mRNA_C-linearis_contig9.16517.1|Name=mRNA_C-linearis_contig9.16517.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3798bp|location=Sequence derived from alignment at C-linearis_contig9:1032906..1052233+ (Chordaria linearis ClinC8C monoicous)back to top |