mRNA_C-linearis_contig9.16513.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16513.1
Unique NamemRNA_C-linearis_contig9.16513.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 1376 bits (3561), Expect = 0.000e+0
Identity = 792/1192 (66.44%), Postives = 896/1192 (75.17%), Query Frame = 1 
Query:    1 RGVLPTSI---GNSGRASRL------GSASGARSS----------------RQLSRQEEGLSCDPARVACEVATAISRDLVGKAERWKLLAKEPLTGKGSPPCH-DHFQLPEIDPLLACDVDKHEVASIYAKDALAGRESPACIHDQRSLRALKVVRNKSWNQLLNVCTIFHLILPMVEIQRCLPCMGMQRLPEALNSNSLHIGWRPTLLGSMWVECWLWLLYAHDLYQVTLSSSTYVHKRI----------DVSIRGSPSTGGKESARSASLAKLPPWQLARTCMVALLGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSALTFLRIFTSIPFMLDVEQIYRGKKGIQVMGLSYGVIMVIFLGALVPAVANRNFQHQSKESYNWVKEQRKLALTRAYMLLKRG-DGTVGRDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCALGTASFSRAQKERTGKVPNCRRSAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVALVVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQPLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAGDVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLPGCDPTN-KPGLSAASRPGGPSDALSLNRRSQKDLGSGAMGGGRGAWE------ADPLLSG-RSQREKGGGPGIXXXXXXXXXXXXXXXSYSD-----GSDGPAAAGEARAGAGXXXXXXXXSVGGKAVGKNGAGSKEGASGTPYGGKFGYSTLADGAQ------KEVDVLALVDEGTKNGVPGGGAVDLGGD----MEVALNDDDSLSXXXXXXSAPVVITSHARSMSQMFWGAEQAKDHEQGGTTLASTEMQENLTRLETENASLRALVDSMQMDLQMANARLYDELQTSSRDRSPSPARASSRRGVGGIDVSGLGGKPS---SSMSPENMAPLRKRVGSANSSIGGELEAIVETEDEEVGTV 3387
            RGVLPTS    GNS  +S L      GS +G+ S+                R ++RQE  LS D    A EVATAISRDLV KAERWKLL  EPLTG  +   H D  QLPE+ PLLA DVDKHEVASIY KDALAGRESP C+H+Q SLRALK+VRNK+WNQLLN+CTI HL+LP+VEIQRCLPCMGMQ++PE+L+SNSLH GWRPTLLGSMW+EC L LLY +DLY+V L+S+ +VHKR           D  I  S   G K S+  +SLA+LPPWQLARTCMVALL FGLLTNIFAHY F ITWHRWSRVTLPFLFISRRTYLKHFVGG+IRVLPRMLPV FLMSFVVFFY F+GYI+YRDEPR SS+L DLDLFS+P+SSA+TFLR+FTSIPFMLDVE IY G KGI+VMGLSYGVIMVIFLGALVPAVANRNFQH     YNWVKEQR+LALTRA+MLL+R  DGTVGR+DWVRLMACLRPDC+A HTSALFDAAKKA+D+  S   ED+RNRLSKGGFFMLCALGTASFSRA+K+  G     RRS  KWKR RQRLD  LSWS PGSNFPLSRQVLNVA+VVQGYQ+VLEGDDPEGRP WAYPLG  LIAYF + ASLRM+ +GAR Y+ QWR H LGMCLNLIGV YY G WFDG GW S Y ILQASRV++LWNVLHRLGSTSSEVA RLEFVFPAVLRASFVLFSVTYSY+VLA+ MYC+TPLG +P++ VADHSMM+RWA YKDV+SFASL+QSFA++TD++MLSNWP+FMDAAGDVG VVTA+IFFYSFKVLTFYFVMPVMLGFIVQSYMAA +PG D  N KP LS++SR      +LS +RRS +D      GGGRG  E      A PL S  +S  E  G   I       XXXXXXXX  S      G  GPAA+  + +G     XXXXX   G      G+ S++        G  G ST+ DG+Q        VDV  L+++G      G G  D GG+     +  L+DDD  S      SAPVV+TSHARSMS  FWGAEQ KDH++ G+  ASTEMQENL R+E ENASLRALVDSMQMDLQMANARLYDE+QT SRDRSPSP R  SRRG G +D S   GKP    S +SP+++AP RKR GS  SS+GG +EAI E EDEEVG V
Sbjct:   13 RGVLPTSYVDNGNSNNSSALSQVGSGGSIAGSSSAPPLPGRRGGHLRKKPTRGVTRQEGHLSLDAIWSASEVATAISRDLVEKAERWKLLGGEPLTGSPARFAHEDRSQLPEVQPLLAHDVDKHEVASIYVKDALAGRESPTCMHNQNSLRALKLVRNKAWNQLLNICTIVHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALASN-HVHKRSHRGGGSDRDGDRDIGVSKGEGAKASSWHSSLARLPPWQLARTCMVALLAFGLLTNIFAHYAFKITWHRWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVVFLMSFVVFFYAFIGYILYRDEPRTSSLLQDLDLFSQPSSSAMTFLRMFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQHH----YNWVKEQRRLALTRAFMLLRREEDGTVGREDWVRLMACLRPDCNAGHTSALFDAAKKADDETVSFGGEDDRNRLSKGGFFMLCALGTASFSRARKDDAGS----RRSGSKWKRIRQRLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPEGRPTWAYPLGGFLIAYFCVQASLRMIVDGARLYIMQWR-HALGMCLNLIGVTYYMGLWFDGTGWHSFYKILQASRVVILWNVLHRLGSTSSEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSR--AIPHSLSFSRRSPRD------GGGRGGAEDGRGGPASPLSSRVKSVLETTGASSIRTIGETGXXXXXXXXXASRSTGELGGAGPAAS-PSSSGRSYGDXXXXXXXXGAVGDMAGSRSRKATPKARTVGNDGASTILDGSQFATLAGDAVDVDTLLEQGAH----GYGGSDRGGEDGNGEDCGLDDDDG-SFSSDESSAPVVVTSHARSMSSTFWGAEQEKDHQRRGSLQASTEMQENLNRVEAENASLRALVDSMQMDLQMANARLYDEMQTKSRDRSPSPGRTPSRRGSG-VDASAHPGKPPLPLSFISPDSVAPPRKRAGSGTSSLGG-MEAIAEIEDEEVGIV 1178
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 1229 bits (3180), Expect = 0.000e+0
Identity = 712/1106 (64.38%), Postives = 798/1106 (72.15%), Query Frame = 1 
Query:  196 AKEPLTGKGSPPCH-DHFQLPEIDPLLACDVDKHEVASIYAKDALAGRESPACIHDQRSLRALKVVRNKSWNQLLNVCTIFHLILPMVEIQRCLPCMGMQRLPEALNSNSLHIGWRPTLLGSMWVECWLWLLYAHDLYQVTLSSSTYVHKRIDVSIRGSPSTGGKESARSASLAKLPPWQLARTCMVALLGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSALTFLRIFTSIPFMLDVEQIYRGKKGIQVMGLSYGVIMVIFLGALVPAVANRNFQHQSKESYNWVKEQRKLALTRAYMLLKRG-DGTVGRDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCALGTASFSRAQKERTGKVPNCRRSAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVALVVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQPLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAGDVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLPGCDPTN-KPGLSAASRPGGPSDALSLNRRSQKDLGSGAMGGGRGAWE------ADPLLS---------------------------GRSQREKGGGPGIXXXXXXXXXXXXXXXSYSDGSDGPAAAGEARAGAGXXXXXXXXSVGGKAVGKNGAGSKEGASGTPYGGKFGYSTLADGAQKEVDVLALVDEGTKNGVPGGGAVDLGG---DMEVALNDDDSLSXXXXXXSAPVVITSHARSMSQMFWGAEQAKDHEQGGTTLASTEMQENLTRLETENASLRALVDSMQMDLQMANARLYDELQTSSRDRSPSPARASSRRGVGGIDVSGLGGKPS---SSMSPENMAPLRKRVGSANSSIGGELEAIVETEDEEVGTV 3387
            ++EPLTG  +   H D  QLPE+ PL+A DVDKHEVASIY KDALAGRESP CIHDQ SLRALK+VRNK+WNQLLN+CTI HL+LP+VEIQRCLPCMGMQ++PE+L+SNSLH GWRPTLLGSMW+EC L LLY +DLY+V L+                                                                  RWSRVTLPFLFISRRTYLKHFVGG+IRVLPRMLPVAFLMSFVVFFY F+GY++YRDEPR SS+L DLDLFS+P+SSA+TFLRIFTSIPFMLDVE IY G KGI+VMGLSYGVIMVIFLGALVPAVANRNFQ+QSKESYNWVKEQRKLALTRA+MLL+R  D TVGR+DWVRLMACLRPDC+A HTSALFDAAKKAED+  SL  ED+RNRLSKGGFFMLCALGTASFSRA+K+  G     RRS  KWKR RQRLD  LSWS PGSNFPLSRQVLNVA+VVQGYQ+VLEGDDPE RP WAYPLG  LIAYF + ASL M+ +GAR Y++QWR H LGMCLNLIGVAYY G WFDG GW S Y ILQASRV++LWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSY+VLA+ MYC+TPLG +P++ VADHSMM+RWA YKDVISFASL+QSFA++TDVIMLSNWP+FMDAAGDVG VVTA++FFYSFKVLTFYFVMPVMLGFIVQSYMAA +PG D  N KP LS++SR    SD+LS +RRS +D      GGGRG  E      A PL S                            R  RE GGG G                SY DG +G A+         XXXXXXXX           AG K+GAS T   G   ++T A  A   VDV  L++EG +    G G  D G    D E    D     XXXXXX         ARSMS  FWGAEQ KDH++ G++ ASTEMQE+L+R+E ENASLRALVDSMQMDLQMANARLYDE+QT SRDRSPSP R  SRRG G +D S   GKP    S +SP++MAPLRKRVGS  SS+GG +EAI E EDEEVG V
Sbjct:   41 SREPLTGSPARATHEDRSQLPEVQPLVAYDVDKHEVASIYVKDALAGRESPTCIHDQNSLRALKLVRNKAWNQLLNICTIAHLMLPIVEIQRCLPCMGMQKIPESLDSNSLHTGWRPTLLGSMWLECLLCLLYVYDLYKVALA------------------------------------------------------------------RWSRVTLPFLFISRRTYLKHFVGGVIRVLPRMLPVAFLMSFVVFFYAFIGYVLYRDEPRSSSLLQDLDLFSQPSSSAMTFLRIFTSIPFMLDVEHIYAGTKGIRVMGLSYGVIMVIFLGALVPAVANRNFQYQSKESYNWVKEQRKLALTRAFMLLRREEDRTVGREDWVRLMACLRPDCNAGHTSALFDAAKKAEDETVSLGGEDDRNRLSKGGFFMLCALGTASFSRARKDDAGS----RRSGSKWKRIRQRLDAALSWSMPGSNFPLSRQVLNVAVVVQGYQIVLEGDDPERRPTWAYPLGGFLIAYFCVQASLWMIVDGARLYIRQWR-HALGMCLNLIGVAYYMGLWFDGTGWHSFYQILQASRVVILWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSR--AVSDSLSFSRRSHRD------GGGRGGAEDGRGGSASPLSSRVKSILETTGASSIRTIGEVGGVGGGASRLTRELGGGAG------PAASLSSSGRSYGDGGEGAASX--------XXXXXXXXXXXXXXXXXARAGGKDGASTTILDGSK-FATFAGDA---VDVDTLLEEGAR----GDGGSDSGXXXXDGEGGGLDXXXXXXXXXXXXXXXXXXXXARSMSSTFWGAEQEKDHQRRGSSQASTEMQESLSRMEAENASLRALVDSMQMDLQMANARLYDEMQTPSRDRSPSPGRTPSRRGSG-VDGSAHPGKPPLPLSFISPDSMAPLRKRVGSGTSSLGG-MEAIAEIEDEEVGIV 1043
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 4.150e-131
Identity = 321/766 (41.91%), Postives = 406/766 (53.00%), Query Frame = 1 
Query: 1279 MLLKRGDGTVGRDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITS--LPEEDNRNRLSKGGFFMLCALGTASFSRAQKERTGKVPNCRR--SAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVALVVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQPLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAGDVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLPGCDPTNKPGLSAASRPGGPSDALSLNRRSQKDLGSGAMGGGRGAWEADPLLSGRSQREKGGGPGIXXXXXXXXXXXXXXXSYSDGSDGPAAAGEARAGAGXXXXXXXXSVGGKAVGKNGAGSKEGASGTPYGGKFGYSTLADGAQKEVDVLAL-VDEGTKNGVP--GGGAV------------------------------------DLGGDM---------EVALNDDDSLSXXXXXXSAPVVITSHARSMSQMFWGAEQAKDHEQGGTTLASTEMQENLTRLETENASLRALVDSMQMDL-------QMANARLYDELQTSSRDRSPSPARASSRR----GVGGIDVS-GLGGKPSSSMSPENMAPLRKRVGSANSSIGGELEAIVETED-EEVG 3381
            MLL+  DGT+ RDD+V+LM CLRPDCD  HTSALF AAKKAE+Q ++     ED+RN LSK GFFMLCALGTA  SR Q ER       RR  S  KW R R RLDG                          YQ+V  GD+PEGRP WAYPLGA LI YF L A+LRM+A G R Y  +WR   L M LN++G+AYY   W  G+ + S Y ILQA R+ +LW  LH LG TSS+VATRLEFVFPAV+RASFVLF++TY+YAV+AYAMYCSTPLG +P+  + D SM+KR+A  K+V +FA+L +S+AS+  V+M SNWPMFMDAAG VG +V A++FFYSFK + FYFVMPV+LGFIV SYM A +P  +   KP                                        PL+  +           XXXXXX          +  G    ++ G+                           SK+        GKFGYSTLADGA  E+DV AL V  G++  +   G G                                      D+  ++         E A + D S  XXXXX  APV++ S ARS+SQ FWG  QA+D     TT+    MQ  L RLE E A+LRA  +S++ DL       ++  A +  E+QT  +D + + A     R    GVG  + + G    P  S SPE    LR RV  ++++I G ++AI+ETED EE G
Sbjct:    1 MLLRHRDGTLPRDDYVQLMMCLRPDCDKDHTSALFSAAKKAEEQQSNSVAAVEDDRNLLSKTGFFMLCALGTADISRTQNERMKMYRRSRRRKSGRKWARARARLDG--------------------------YQIVRAGDNPEGRPAWAYPLGAVLIFYFCLQAALRMIAGGVRPYFLEWRNI-LEMSLNMVGIAYYAQLWPRGQAFHSFYQILQALRLELLWINLHLLGPTSSDVATRLEFVFPAVIRASFVLFALTYTYAVVAYAMYCSTPLGGEPIGDLKDDSMVKRFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHVPTVEDPPKPXXXXXXXXXXXXXXXXXX----------------------PLIGSKGTXXXXXXXXXXXXXXXDEEKASPLVRFRKGLQRRSSFGDEP-----------------------TRSKDR-------GKFGYSTLADGAHTEIDVAALAVPRGSQEALAELGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVEDDVATELWDAGKRRGRERAYSVDSSTEXXXXXHHAPVMVASRARSLSQTFWGVHQARDGGAANTTV----MQGALARLENELANLRAENESLRADLGPREVSTRLHVAEMLKEVQTPMQDGASTSAGQKPYRQPSVGVGAANAAAGETESPLPSTSPEGDGSLRSRVVGSSNTIWG-MQAILETEDGEETG 682
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: D7FGS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS0_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 9.820e-91
Identity = 176/345 (51.01%), Postives = 212/345 (61.45%), Query Frame = 1 
Query:    7 VLPTSIGNSGRASRLGSASGARSSRQLSRQEEGLSCDPARVACEVATAISRDLVGKAERWKLLAKEPLTGKGSPPCHDHFQLPEIDPLLACDVDKHEVASIYAKDALAGRESPACIHDQRSLRALKVVRNKSWNQLLNVCTIFHLILPMVEIQRCLPCMGMQRLPEALNSNSLHIGWRPTLLGSMWVECWLWLLYAHDLYQVTLSSSTYVHKR----------------IDVSIRGSPSTGGKESARSASLAKLPPWQLARTCMVALLGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEP 993
            V+P   GNSG   R  SASG    R+ S  E     +    A +VATAISRDLV KAERWKLLA+EPL  +             I PLLA +VDKHEVA+ Y +DALAGR+S ACIH++RS+RALK  RN +WN LLN+CT+ HLILPMVEIQRCL CMG  R   +L  N+L +GWRPT LGS+W+EC L + Y   L Q  LS    +  +                             +  A   SL+ L PWQLARTCMV +L   L+  +F+HYVFG+TW  W  V LPFLFISRRTYLKHF+   IR+LPRM+PV FL+      YGF+GYIVYRDEP
Sbjct:   42 VMP---GNSGMP-RAKSASGGVVGRRPSTDEASWDAEEIATA-DVATAISRDLVTKAERWKLLAEEPLMAQS------------ITPLLADNVDKHEVAATYVRDALAGRDSSACIHNERSIRALKWFRNDAWNSLLNICTLVHLILPMVEIQRCLSCMGPHRRSASLEDNTLFLGWRPTSLGSLWIECVLCVFYTCHLRQEALSRLGSIPVKNGGGXXXXXXXXXXXXXXXXXXXXELERDRPQAEVYSLSALRPWQLARTCMVTVLSVSLVAKLFSHYVFGVTWFSWRHVILPFLFISRRTYLKHFLAATIRLLPRMVPVVFLIXXXXXXYGFIGYIVYRDEP 369
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: A0A836CJB1_9STRA (Ion_trans domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJB1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 8.450e-51
Identity = 208/741 (28.07%), Postives = 313/741 (42.24%), Query Frame = 1 
Query:  313 AKDALAGRESPACIHDQRSLRALKVVRNKSWNQLLNVCTIFHLILPMVEIQRCLPCM--GMQRLPEA-----LNSNSL--HIGWRPTLLGSMWVE---CWLWLLYAHDLYQVT--LSSSTYVHKRIDVSIR----------------GSPSTGGKE------------SARSASLAKLPPWQLARTCMVALLGFGLLTNIFAHYVFGITWH-RWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSALTFLRIFTSIPFMLDVEQIYRGKKGIQVMGLSYGVIMVIFLGALVPAVANRNFQHQSKESYNWVKEQRKLALTRAYMLLKR------------------------------------------GDGTVG-----------RDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCAL-----------------GTASFSRAQKERTGKVPN------------CRRSAGKWKRFRQRLDGILSWS--TPGSNF---------PLSRQVLNVALVVQGYQVVLEG------DDP------EGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQ--WRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCST 2085
            ++DA+ GR+  A IH QR L A+++ R +    + NV   F L+LP++E+     C    ++ + +      L+ +SL   +GWRPT+LGS W+E   C  +L     L+ +    S   + H  +  ++R                G  +  G               +R+  LA  P  + AR       G      +    V  +    ++SR    F++I+   YL+ FV G+  VLPR++PVA   +FVV  YG++GY+ +         L +LDLF     + LT LR+FTS+ F+LD+E +YR   GI++   +Y ++  + L ALV AVAN+ FQ QS ++Y  V  QR  AL+ A+  L+                                           G G+ G            DDWV LMA LRPD        LF+   +        P      R  +  FF LCAL                 G+AS S  Q +R                   RR     +  R+R+   + W+  TP +N+          + R V NVA VV    + ++G       DP      EGR      L   L+ YF+  A+  + A GA   +    W    LG+ LN +  A+  G W +G      Y++  A R + LW V+H+L  T S+VA RL  V P +LR++ VL +  YS A+ AY M   T
Sbjct:  149 SRDAMHGRKIIAHIHTQRQLSAVRLARARPIILIFNVLCFFQLLLPLIEMPMGWECREGAVRSIQDGGVLCELDGDSLAWFVGWRPTMLGSSWLELPICAFFLFEIALLFMIRDRCSGRPFYHTNVWATMRLACVWLQLVDILIFLWGRYTYEGTALSMEFFRRARAGCSRAPRLADAPALRSARRSGQQRSGAAAKCALKQERVAAVRKRGQYSRALTFFIYITNHQYLRLFVKGLWHVLPRLMPVATAAAFVVCLYGYVGYLAFNHTRAQPDALRELDLFRTLPGAMLTALRMFTSVVFVLDLEFLYRRSPGIRIYCATYALLAAVLLCALVTAVANKLFQQQSLDAYRLVIRQRARALSMAFDCLRGANIGSSDGSXXXXXXXXXXXXXXXXXXXXXXXXXXSTGHARGGSGSSGVPAVVGGAEVTADDWVALMAHLRPDLSGRGCRLLFNTVGEGCGGGDLGP-----TRCDRAQFFELCALVQAHIEGGAEDWRAPLRGSAS-SMPQPQRXXXXXXXXXXXXXXXXALARRCGSTVRALRRRVRRYVRWTVATPFNNWWGLTHADDIHVRRAVNNVASVVHAVLLAVQGTVLPGEQDPAGNTAFEGRELHMALLEYTLVVYFWADAAAVLWAGGAARALSDAYWC---LGVALNAVATAWVAGAWPEGRD--RAYYVAMAPRALGLWRVVHQLQGTRSDVAERLARVLPTLLRSTSVLLAFVYSSALCAYGMLWHT 878
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: A0A6H5JGA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.480e-32
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:  259 IDPLLACDVDKHEVASIYAKDALAGRESPACIHDQRSLRALKVVRNKSWNQLLNVCTIFHLILPMVEIQRCLPCMGMQRLPEALNSNSLHIGWRPTL 549
            I PLLA +VDKHEVA+IY +DALAGR+S ACIH++RS+RALK  RN +WN LLNVCT+ HL LPMVEIQRCL C+G  +   +L  N+L +G RP +
Sbjct:    5 ITPLLADNVDKHEVAAIYVRDALAGRDSSACIHNERSIRALKCFRNDAWNSLLNVCTLVHLTLPMVEIQRCLSCVGPHKRSASLEDNTLFLGIRPEM 101
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: A0A485LBI8_9STRA (Aste57867_18325 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBI8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.170e-16
Identity = 134/617 (21.72%), Postives = 253/617 (41.00%), Query Frame = 1 
Query:  562 WVECWLWLLYAHDLY-QVTLSSSTYVHKRIDVSIRGSPSTGGKESARSASLAKLPPWQLARTCMVALLGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSALTFLRIFTSIPFMLDVEQ-IYRGKKGIQVMGLSYGVIMVIFLGALVPAVANRNFQHQSKESYNWVKEQRKLALTRAYMLLKRGDG------TVGRDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCALGTASFSRAQKERTGKVPNCRRSAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVAL-----VVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQPLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAGDVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLP 2373
            WVE +  L+++ D++ +  +SS    HK                        K  PW   R  ++ +     L    A    G    R+SR   PFL I+RR  ++      IR L  +  +  L+  VV F+G  G++++ D    S++LG +  FS    +    L + + +P +  + Q  Y   +   +  + + +    FL  L  AV+ R ++  +++      ++RK+AL++A+ LL           T+  D W+++   L+P+  A     +F ++   + ++    E           F  L ++    F  A+  +  +     +    W+R   R+  +L   T    +P+    + V       VVQ  QV            W   +G  L++ F +   L++ A G   +  +     L +    +G  +YT    D E     Y +  A R + +  +L+ L      +   +  + P + + S V+ SV Y++ +LA A Y    L + P    A  +    W  +K+V    +      +L +  ML+ W   MDAA  +       IFF++F++     ++P+ +GF+V+S+ + Q P
Sbjct:  194 WVELFCILVFSADVWVRYDMSSDVTKHK----------------------FRKREPWATLRFYLLLVT---FLDMALAWGGVGFAVPRYSRTFRPFLVIARRRNVRVVFASCIRALKDVAVILALIFCVVGFFGLTGFLLFADS---STMLG-VPYFSTLGDALYNMLLLQSCLPTLPALMQPYYVDNQWTSLYFILFVLFTNFFLIKLTIAVSYRTYKRNTEKMLYKRLQKRKIALSKAFDLLADDPDDPIFPRTLSVDSWLKVCKYLKPNWTAEEAEVVFFSSDVNQTRVVDFTE-----------FIQLASI----FVNAKVSKRHRQSTFVQGIKVWQR---RVRNVLLAQTTVFGYPVVYMEVFVGFLICLSVVQATQVNNYALTKVLNQRWRL-VGVSLLSLFTVEIVLKLFAFGQEEFFNR-PFCKLDIATAAVGWIFYTITSLDPEFPIVFYDMALAVRSLRVLKLLN-LFPPFHNILWTMNRIMPLIGQLSLVILSVVYAFGILAQANY-GPLLASFPSSLKASATP---WYAHKEVFQLDTFGNCLVTLFEEAMLAGWNSIMDAAYLITKSPNTLIFFFTFRITMSNILLPIFVGFLVESFSSNQKP 756
[Close]
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Match: A0A6G0XEA7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEA7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.920e-16
Identity = 120/596 (20.13%), Postives = 245/596 (41.11%), Query Frame = 1 
Query:  703 ASLAKLPPWQLARTCMVAL----LGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIRVLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSALTFLRIFTSIPFMLDV-EQIYRGKKGIQVMGLSYGVIMVIFLGALVPAVANRNFQHQSKESYNWVKEQRKLALTRAYMLLKRGDG--------TVGRDDWVRLMACLRPDCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCALGTASFSRAQKERTGKVPNCRRSAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVAL-----VVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYMKQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHIL------------------QASRVIVLWNVLHRLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQPLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAGDVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLPGCD 2382
            A   K  PW   R  ++ L    +G  L    FA         R+SR+  PF+ I+RR  ++      IR L  ++ +  L+  VV F+G +G++++ D    SS++ ++  F+   +S    L I + +P ++ V E  Y   +   +  + + +    FL  L  AV+ R ++  +++      ++RK+AL++A+ LL             TV  + W+++   L+P+  A     +F ++   + +     +           F  L ++   +    ++ R+  V   R        ++ R   +L   T     P+    + V       VVQ  QV            W   +G  L++ F +  + ++ A G   +  +        C   I VA        G GW  L+++L                  ++ RV+ L N++    +    +   L  + P + + + V+ +V Y++A++A  +Y +  +       +A  +    W ++K+     +      +L +   L+ W   MDA   +    T  +FF+++++     ++P+ +GF+V+S+ + Q P  D
Sbjct:  197 AQFRKREPWATLRFGLLVLTFLDIGLNLCGVPFAQM-------RYSRIFRPFMVIARRRNIRVVFASCIRALKDVMVILALLLCVVMFFGLMGFLLFAD----SSVMLNVPYFATLGNSMYNMLLIQSCLPVLMTVMEPYYIQSQWSSIYFVIFVLFTNFFLVKLTIAVSYRTYKKNTEKMLFKRLQKRKIALSKAFELLSDDAAMADPLAIPTVSIESWLKVCQHLKPEWSAEEAEVVFFSSDIHQTRSVDFTQ-----------FIQLASIFVNAHVSQRRRRSTFVQGMRV-------WQHRARNVLLAQTTIYGCPVIYMEVFVGFLICLSVVQATQVNNYALTKSLNHTWRM-VGIVLLSLFTVEIAAKLFAFGREEFFNR------PFCKFDIVVA--------GVGW--LFYVLTSVNPTFPIVFYDLALAVRSLRVLKLLNLIPPFHN----ILWTLNRIMPLIWQLTLVILAVVYAFAIVAQGLYGNLLVNFP----IARKAQAAAWYLHKEEFQLDTFEHCLVTLFEEATLAGWNSIMDAVYLLTQRSTTLVFFFTYRIAISNILLPIFVGFLVESFSSNQKPATD 738
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L0T6_9PHAE0.000e+066.44Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FR41_ECTSI0.000e+064.38Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
D7FGS1_ECTSI4.150e-13141.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGS0_ECTSI9.820e-9151.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJB1_9STRA8.450e-5128.07Ion_trans domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5JGA6_9PHAE4.480e-3262.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485LBI8_9STRA1.170e-1621.72Aste57867_18325 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XEA7_9STRA9.920e-1620.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:975547..988862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog112098.XP_008617834.1
Preferred nameTPCN3
KEGG koko:K16897
KEGG TC1.A.1.11.18
Hectar predicted targeting categoryother localisation
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Exons24
Model size4096
Cds size2940
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16513.1prot_C-linearis_contig9.16513.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 976253..986937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930723.4665334-UTR-C-linearis_contig9:975546..9762521622930723.4665334-UTR-C-linearis_contig9:975546..976252Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 975547..976252 -
1690881216.2189612-UTR-C-linearis_contig9:975546..9762521690881216.2189612-UTR-C-linearis_contig9:975546..976252Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 975547..976252 -
1622930723.8026252-UTR-C-linearis_contig9:986937..9870031622930723.8026252-UTR-C-linearis_contig9:986937..987003Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 986938..987003 -
1690881216.470744-UTR-C-linearis_contig9:986937..9870031690881216.470744-UTR-C-linearis_contig9:986937..987003Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 986938..987003 -
1622930723.8145807-UTR-C-linearis_contig9:987301..9873881622930723.8145807-UTR-C-linearis_contig9:987301..987388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 987302..987388 -
1690881216.4813688-UTR-C-linearis_contig9:987301..9873881690881216.4813688-UTR-C-linearis_contig9:987301..987388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 987302..987388 -
1622930723.8265076-UTR-C-linearis_contig9:987600..9876971622930723.8265076-UTR-C-linearis_contig9:987600..987697Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 987601..987697 -
1690881216.4957235-UTR-C-linearis_contig9:987600..9876971690881216.4957235-UTR-C-linearis_contig9:987600..987697Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 987601..987697 -
1622930723.8413382-UTR-C-linearis_contig9:988099..9881841622930723.8413382-UTR-C-linearis_contig9:988099..988184Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 988100..988184 -
1690881216.5043278-UTR-C-linearis_contig9:988099..9881841690881216.5043278-UTR-C-linearis_contig9:988099..988184Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 988100..988184 -
1622930723.8599024-UTR-C-linearis_contig9:988747..9888621622930723.8599024-UTR-C-linearis_contig9:988747..988862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 988748..988862 -
1690881216.5155835-UTR-C-linearis_contig9:988747..9888621690881216.5155835-UTR-C-linearis_contig9:988747..988862Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 988748..988862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930723.4824333-CDS-C-linearis_contig9:976252..9764351622930723.4824333-CDS-C-linearis_contig9:976252..976435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 976253..976435 -
1690881216.2384558-CDS-C-linearis_contig9:976252..9764351690881216.2384558-CDS-C-linearis_contig9:976252..976435Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 976253..976435 -
1622930723.4999545-CDS-C-linearis_contig9:976963..9770721622930723.4999545-CDS-C-linearis_contig9:976963..977072Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 976964..977072 -
1690881216.247734-CDS-C-linearis_contig9:976963..9770721690881216.247734-CDS-C-linearis_contig9:976963..977072Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 976964..977072 -
1622930723.5136342-CDS-C-linearis_contig9:977373..9775161622930723.5136342-CDS-C-linearis_contig9:977373..977516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 977374..977516 -
1690881216.2695296-CDS-C-linearis_contig9:977373..9775161690881216.2695296-CDS-C-linearis_contig9:977373..977516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 977374..977516 -
1622930723.530327-CDS-C-linearis_contig9:978009..9782111622930723.530327-CDS-C-linearis_contig9:978009..978211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 978010..978211 -
1690881216.280266-CDS-C-linearis_contig9:978009..9782111690881216.280266-CDS-C-linearis_contig9:978009..978211Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 978010..978211 -
1622930723.544537-CDS-C-linearis_contig9:978652..9791071622930723.544537-CDS-C-linearis_contig9:978652..979107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 978653..979107 -
1690881216.2914379-CDS-C-linearis_contig9:978652..9791071690881216.2914379-CDS-C-linearis_contig9:978652..979107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 978653..979107 -
1622930723.5607293-CDS-C-linearis_contig9:979496..9796561622930723.5607293-CDS-C-linearis_contig9:979496..979656Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 979497..979656 -
1690881216.3035016-CDS-C-linearis_contig9:979496..9796561690881216.3035016-CDS-C-linearis_contig9:979496..979656Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 979497..979656 -
1622930723.5741377-CDS-C-linearis_contig9:979852..9800181622930723.5741377-CDS-C-linearis_contig9:979852..980018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 979853..980018 -
1690881216.312952-CDS-C-linearis_contig9:979852..9800181690881216.312952-CDS-C-linearis_contig9:979852..980018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 979853..980018 -
1622930723.5871067-CDS-C-linearis_contig9:980573..9807341622930723.5871067-CDS-C-linearis_contig9:980573..980734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 980574..980734 -
1690881216.3224337-CDS-C-linearis_contig9:980573..9807341690881216.3224337-CDS-C-linearis_contig9:980573..980734Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 980574..980734 -
1622930723.5995607-CDS-C-linearis_contig9:981322..9814701622930723.5995607-CDS-C-linearis_contig9:981322..981470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 981323..981470 -
1690881216.335132-CDS-C-linearis_contig9:981322..9814701690881216.335132-CDS-C-linearis_contig9:981322..981470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 981323..981470 -
1622930723.6145363-CDS-C-linearis_contig9:981773..9818511622930723.6145363-CDS-C-linearis_contig9:981773..981851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 981774..981851 -
1690881216.3501954-CDS-C-linearis_contig9:981773..9818511690881216.3501954-CDS-C-linearis_contig9:981773..981851Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 981774..981851 -
1622930723.6311467-CDS-C-linearis_contig9:982239..9823211622930723.6311467-CDS-C-linearis_contig9:982239..982321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 982240..982321 -
1690881216.3619556-CDS-C-linearis_contig9:982239..9823211690881216.3619556-CDS-C-linearis_contig9:982239..982321Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 982240..982321 -
1622930723.647557-CDS-C-linearis_contig9:982834..9829691622930723.647557-CDS-C-linearis_contig9:982834..982969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 982835..982969 -
1690881216.3725648-CDS-C-linearis_contig9:982834..9829691690881216.3725648-CDS-C-linearis_contig9:982834..982969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 982835..982969 -
1622930723.662705-CDS-C-linearis_contig9:983696..9838351622930723.662705-CDS-C-linearis_contig9:983696..983835Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 983697..983835 -
1690881216.3822858-CDS-C-linearis_contig9:983696..9838351690881216.3822858-CDS-C-linearis_contig9:983696..983835Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 983697..983835 -
1622930723.6831946-CDS-C-linearis_contig9:984126..9842331622930723.6831946-CDS-C-linearis_contig9:984126..984233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 984127..984233 -
1690881216.3941507-CDS-C-linearis_contig9:984126..9842331690881216.3941507-CDS-C-linearis_contig9:984126..984233Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 984127..984233 -
1622930723.7030096-CDS-C-linearis_contig9:984529..9846591622930723.7030096-CDS-C-linearis_contig9:984529..984659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 984530..984659 -
1690881216.404276-CDS-C-linearis_contig9:984529..9846591690881216.404276-CDS-C-linearis_contig9:984529..984659Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 984530..984659 -
1622930723.7177184-CDS-C-linearis_contig9:985148..9852291622930723.7177184-CDS-C-linearis_contig9:985148..985229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985149..985229 -
1690881216.4165015-CDS-C-linearis_contig9:985148..9852291690881216.4165015-CDS-C-linearis_contig9:985148..985229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985149..985229 -
1622930723.7306745-CDS-C-linearis_contig9:985510..9856001622930723.7306745-CDS-C-linearis_contig9:985510..985600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985511..985600 -
1690881216.427351-CDS-C-linearis_contig9:985510..9856001690881216.427351-CDS-C-linearis_contig9:985510..985600Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985511..985600 -
1622930723.744332-CDS-C-linearis_contig9:985937..9861351622930723.744332-CDS-C-linearis_contig9:985937..986135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985938..986135 -
1690881216.4393427-CDS-C-linearis_contig9:985937..9861351690881216.4393427-CDS-C-linearis_contig9:985937..986135Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 985938..986135 -
1622930723.7661157-CDS-C-linearis_contig9:986388..9864791622930723.7661157-CDS-C-linearis_contig9:986388..986479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 986389..986479 -
1690881216.4497905-CDS-C-linearis_contig9:986388..9864791690881216.4497905-CDS-C-linearis_contig9:986388..986479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 986389..986479 -
1622930723.783082-CDS-C-linearis_contig9:986855..9869371622930723.783082-CDS-C-linearis_contig9:986855..986937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 986856..986937 -
1690881216.460849-CDS-C-linearis_contig9:986855..9869371690881216.460849-CDS-C-linearis_contig9:986855..986937Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 986856..986937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16513.1

>prot_C-linearis_contig9.16513.1 ID=prot_C-linearis_contig9.16513.1|Name=mRNA_C-linearis_contig9.16513.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=980bp
MVEIQRCLPCMGMQRLPEALNSNSLHIGWRPTLLGSMWVECWLWLLYAHD
LYQVTLSSSTYVHKRIDVSIRGSPSTGGKESARSASLAKLPPWQLARTCM
VALLGFGLLTNIFAHYVFGITWHRWSRVTLPFLFISRRTYLKHFVGGMIR
VLPRMLPVAFLMSFVVFFYGFLGYIVYRDEPRDSSILGDLDLFSEPTSSA
LTFLRIFTSIPFMLDVEQIYRGKKGIQVMGLSYGVIMVIFLGALVPAVAN
RNFQHQSKESYNWVKEQRKLALTRAYMLLKRGDGTVGRDDWVRLMACLRP
DCDAAHTSALFDAAKKAEDQITSLPEEDNRNRLSKGGFFMLCALGTASFS
RAQKERTGKVPNCRRSAGKWKRFRQRLDGILSWSTPGSNFPLSRQVLNVA
LVVQGYQVVLEGDDPEGRPGWAYPLGACLIAYFFLHASLRMLAEGARSYM
KQWRRHGLGMCLNLIGVAYYTGFWFDGEGWRSLYHILQASRVIVLWNVLH
RLGSTSSEVATRLEFVFPAVLRASFVLFSVTYSYAVLAYAMYCSTPLGTQ
PLEGVADHSMMKRWAVYKDVISFASLYQSFASLTDVIMLSNWPMFMDAAG
DVGGVVTARIFFYSFKVLTFYFVMPVMLGFIVQSYMAAQLPGCDPTNKPG
LSAASRPGGPSDALSLNRRSQKDLGSGAMGGGRGAWEADPLLSGRSQREK
GGGPGIGAWAGVSDLSSSSRRSYSDGSDGPAAAGEARAGAGGGVGDGFGS
VGGKAVGKNGAGSKEGASGTPYGGKFGYSTLADGAQKEVDVLALVDEGTK
NGVPGGGAVDLGGDMEVALNDDDSLSSSEEDSSAPVVITSHARSMSQMFW
GAEQAKDHEQGGTTLASTEMQENLTRLETENASLRALVDSMQMDLQMANA
RLYDELQTSSRDRSPSPARASSRRGVGGIDVSGLGGKPSSSMSPENMAPL
RKRVGSANSSIGGELEAIVETEDEEVGTV*
back to top

mRNA from alignment at C-linearis_contig9:975547..988862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16513.1 ID=mRNA_C-linearis_contig9.16513.1|Name=mRNA_C-linearis_contig9.16513.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13316bp|location=Sequence derived from alignment at C-linearis_contig9:975547..988862- (Chordaria linearis ClinC8C monoicous)
CGGGGAGTGCTCCCGACGAGCATCGGTAACAGCGGCAGGGCGTCAAGGCT
CGGGAGCGCGAGTGGGGCAAGATCGTCAAGGCAGCTCTCGCGCCAAGAGG
AAGGGCTTTCCTGCGGTGAGGGATCTCTGTATCCGTCTCTTGCTTGTATT
GCAAACAGCAACAAAGGCAGTGTTTGCTCTGTGCAGGATGGCCTTTTTTG
TCATTGGGCACTTGGTGTTAAAAAATCGCCAAGGTCCTGGGGAAATGGTT
GAAGGATGGATGCTGGATCGTTTTCTTGGTTTTCGTCGAAATGGGTGCCT
CGACGCACGTCCAGAGTCGAATTATTCGTTCCAACTGCTCGTTGGTGTTT
TGGGCCTGGATAGCGACACGCCTTGACGCCTTTGAAGATTGAGATGTGGT
GCGATATTCACGAGGGACGATGAACTGCCTGCTACGTGAGCCGCTGTATC
CTGTTTCCGTGTCCGAGGCGTGATACGATGTAGACGTGTACCTTACAAAT
GTAGCGTGTCTGTGACACACATGGCTATGGTTACTGCGGCCGTATTTCGC
TCGTTTTCACGAAGGTTTTAAGGCCCGTTTGGTGTAGCCCCCTTAGTGGG
CTATGCTCGATCAAGCCTAAAGCACGCTCTCTGCTGTAATTATGTTGTTT
TGTGTTGTGACGTTTTCTACTAACGCAGACCCCGCTCGGGTTGCCTGCGA
AGTGGCGACCGCCATCAGCCGGGACCTGGTGGGGAAAGCAGAAAGATGGA
AACTCCTGGCCAAGTGAGTTGTTTTTGTGCTGGCTAGAGCTGTTGCATAC
ACTGCGTCGAAGCCCGTGCGCACAACCCCCGTTTGTCGGTCCCCAAAGAC
GATGCTTGTACGAAGTACATACAAGTACATGTGTAGCTGCTGCAATCTGC
ACATGCCACATATGCCTGTGAGAGCGGAATGGCAGGCCGCGGGTTGATCT
GTTGATTTGGCACGGTTCGAACAGTGAGTATCGTTATCAGCCAGGCCCGG
TGCCACCGTGCCGGCATGTCGCCGAAAACACTTTGTTGCTATTTGTACTC
GATGATGGAATGTTCCTGAACCAGCTGTAGTGTGCACGAAACCGACAAAT
TTACCGTATGCTATGTTGAATATACTGTGTCATGCTTGGAATCGGTATGG
CCACATGGCCTACAGGGAACCGTTGACGGGAAAGGGGTCACCACCTTGCC
ATGACCACTTCCAGCTGCCGGAGATCGACCCGCTGCTGGCTTGCGACGTC
GACAAGCACGAGGTAATCAAGAGTGGCAGCCATTTATGCTTGTTTTTACC
GGTCCTACTGCAGGTCCAACGGTAATACAACACCTGCACATGTAAAGCAC
CACCGAAACTTTATCAGAGACTCTGTTCAGACGTGGCCAAAAAGTCCAAA
TACGTGCGTCGAAGTATCATACAATAACCCACCATTTATTTTTCACGGTC
GATTCGGTACGATGCGGTTCTCAGGTGGCGTCTATTTATGCCAAGGACGC
CCTCGCGGGGAGGGAGAGCCCGGCCTGCATCCACGACCAGAGATCTCTTC
GCGCCTTGAAGGTATCGTCACGAGAAGTGGGAAGTTGATCGGGAAGGGCG
GAGCTCTGTCGTTGTACCATTGATTGCTAGCGCAATCATGTTTACATCAC
GCCGTTGCTGGAATGGCAAAAGGAGCGAGGTGCATCATGCGTGTGTGTCC
GTAGCAACAATTCCTCAAACCCAGTCTGTCGCTGATTTTCTTCACATGCA
TCATCAGACAAGGATTCGATGCGCATTCGTGACTCTCCACTGACATCGCA
CCTCTTTCCCGATTCTATCTTTTCCGTTTTTCTTTTCCATGTTTGATCCC
GCAAACCAGGTGGTTCGGAACAAGTCGTGGAACCAGCTGTTGAACGTCTG
CACGATTTTCCACCTCATCCTCCCCATGGTGGAGATACAGAGATGTCTAC
CCTGCATGGGCATGCAGAGGCTCCCTGAGGCACTCAACTCCAACTCTCTG
CACATAGGTAAAAGTGACTTTCGGTCTACAGGTCTACAGCACTACCACCT
ACTCCTTTGTGTTTCCCCGTTTCCCTTTGGGCCACGGCTGTCCTGCCCTC
TCTCTGTTTTGAGTTTTGAGCCTGTCTGACTGCATCAGTATTCGATACAT
GCCTGACGTCGCGTGCAGCAGTGCCTATCATGTGCCTCGTTTTCACCCAC
ACTCTTTTAATTTGCACTTTTTTTGATCATTTTTCAGGCATGTTCTCTCA
CCCATGCGTATTCTCGTTCTTTCCAAAAGGTTCATCGCCACACACGCAGA
CCCGTCCGCAGCAACGAAAAAGAGTACCACCTCTCCCTCCTGGTCCCTTT
CGCTTGGGTTGGTGTTGGACCGAGGGTATGCAGGTTGGCGACCTACCTTG
CTGGGATCGATGTGGGTGGAGTGCTGGCTGTGGCTCCTCTACGCGCACGA
CCTTTACCAAGTCACTCTCTCCAGGTGGGCGTGCAATGTCGATATTTCTC
TCTTGCTCTCTCCATCTCTGAAATCGAAAGTGAATCGTCTTTTAGCCGAT
TGTGCTATTTTTTTTTCTTCTTGAGTGCATGTGCTGTTCGCTGGCTTGCC
TTTCTTTCTCTTTCTTGTCCCTCAATGCCGTATCTCCTTCTACTTGTATT
CACGTGGCAGTTTCTCCTGCTTCTCGCTTCCCCCCCCCCCCCCCACCTTC
CGATACTTCTCCCTTCGGACTTAACAGCAGCACCTACGTTCACAAGCGCA
TCGATGTCTCTATCAGAGGCAGCCCCTCAACGGGGGGTAAAGAGTCAGCG
CGGTCAGCTTCATTGGCCAAGCTGCCGCCGTGGCAGCTGGCGCGGACGTG
CATGGTGGCGTTGTTAGGCTTCGGCCTGCTGACCAACATTTTCGCACACT
ATGTGTTTGGGATCACGTGGCACAGGTGCCCTTTTGTTTTTACCGTTTTT
GTGGAACATGCTACTGCTGTTGCTTAGTCTAATGGAATTCAGCGACAGCA
GTAGCGCTCTTGCAGATAGGTCTTGAGTTTTTTTTCCGATGTCATGGGTC
CTGCTGAGCGCTGCCTAAATCGTCCGTTTTGATGACAGGCTCGAATTCGA
TATTCACGTATTTTGGCGATGTTTGAGGTTGATAAGCGTCGTACAGCTTT
TTTTATCTTCGTTTACCCTTCCACCCCAGCTTGGCCAAGTATGCTACATT
AGCGTCCGCATTCCAGTTGACCTCGTGATGTCTATTGTTTGCTTGTTTTT
TAATCTTTATAGGTGGAGCCGAGTAACACTGCCTTTTCTTTTCATCAGCC
GGCGGACATACCTTAAACACTTCGTAGGAGGCATGATAAGGGTCCTTCCT
AGGTGAGAGCGTGTGTTCCGTAAAGCTTTCTCGCCTGTTCGTTGATTGTA
TTCATCGCGCCACGTGTTTGGTGCTATGAGTGTTGCTATGAGTGGTGCTA
TTGGTCTTGCTGTTGAGAAACGCGAGAGACCCTCCTGCTGGATCTGTTGA
TGTTGCTGGTGTTTGTGCTGCTGTCTCTGCTGCTGCTGCTGCTGCTGCTG
CTTCTGCTTCTGCTGGTCTTATTGGTAATCCTGGTTACGATCTCGTTGGC
GTTGCTATGTACAACCACTGTCACTGTCCACAGGATGCTTCCTGTGGCGT
TCCTGATGTCGTTCGTGGTGTTCTTCTATGGATTTCTTGGATACATCGTC
TACCGGGACGAACCGTGAGCATGGGTTTAGATTCAGAAGCACAGGCCAAA
ACGTATACCCTACGAGAAGCTGAACGACGCACATCCCATGATAAAAACAA
AGCATTGCCGTCGACCCTAGGGAGGGCCTTATTTTTCTGTTCATGCTTGG
CTCAAACCCGTTTTGGCTGAGGTCCGAACAAACTCTATGGTGCTGTAGGT
ACCCCGCGGCTTAATTCCGTGGAATAGGTTCTTGGAAACACCGCTCTTGC
GTGAGCGTGTTTGGCGTGCGAGCACTGTCTACTTAGTCACTACCTAGGGC
CATTTGGTGGCCCATCCATTGGTGGCCCTTCGTTTTGTTTTGGCAGACGG
CACTGCTTTCCTTCCGTTGTTCTTGTCCTCGCTGATCACGGTACAGAGAG
CGCGTGTCTTACGTCTAGCTTGCCCCACACGCTTTTCGTTTCGGTGTCGG
CTATATTTTTTAAAATTGATCAGTGCCTGATTCGATGTTGCTTCGTTTGT
CAGGCGAGACTCTAGTATTCTGGGAGACTTGGACCTGTTCAGCGAACCGA
CTTCATCGGCACTGACGTTTCTGCGCATCTTCACGTCGATCCCCTTCATG
CTGGATGTCGAGCAGATCTACAGAGGGAAAAAGGTGACGCGAAGTTCCTG
CCTAGCTTCGAGTCCTGAAGTCAGTCCCCTCCCCCCCGCATGCTACATAC
TTCTACGTTGTACAGGTGTATCAACCGAGCGGGGAAGCGTAATAAATACA
AATTGTAATACTGTCCGTACGATATGACGGGGCTCTGGCAGCTTCCCCCA
CGGGTTCTCGTGGTCATTTCCCGTATCATCCCTTCCCACTCACCGCCGTG
CTTATCGCCCCGCCCCCACCGTGCCATGCCATCTGGATGCGACGTGTATT
CTTCTTCTTCGTGTTGGTTTTGAAATCAGGGAATTCAAGTGATGGGGCTT
TCGTACGGCGTCATCATGGTTATTTTTCTCGGCGCTCTGGTGCCCGCCGT
TGCAAACCGCAACTTCCAGCACCAGTCGAAGGAAAGGTAGGTTATAACCT
ACCTACGAGCTACGGAGGTGTTTGCCTCTTGTACTGCGTTACTGGTCGAA
TGCTATTGAAGATTGTGATCATGTGAGAAACTACTGAGTGATGATTCATT
TGCCCAATCCGAGTTGACTCGGGGTTCTCCGGCCAAACGAACCAATTGTC
ACATCTACAGCTATTTCATCCTGGCATAGCGAGTGCGACGTTGATGTCAC
CTCGTTGTCTTTGCGTGTTTATTGACTCATATCTTACGAAAGTATATCAC
CCACCCCCCCCCACCCCACCCCTCCAGCTACAACTGGGTCAAGGAGCAGC
GTAAGCTTGCTCTGACGCGCGCGTACATGCTGCTCAAGCGGGGGGACGGG
ACTGTCGGCAGGGATGACTGGGTACGGCTCATGGCGTGCCTTCGCCCCGA
CTGCGACGCAGCTCACGTGAGTGGATGGATAGATGGAGGGAGTATGGTGC
ATGGTGCGTGGTGTAATGATGGTGTATGGACGGGTGCATGCACACGCTAT
CGTTTGGTCTACGCTACAGCAGTGCCGCCGTTGAGGCTGGCGCCGACTAT
GAAAATTCCAGCCACGGAAGTTTGCAGTGGTGCGACAGGCGCCTTTTGAT
CGGTTCGAGTTGGGCCGCGCCAGCCGCGAGAAGCCAAGAGTACTTCAACG
TACCCGTATCGACCGGCCATACCGAGTGCCGAGACACCTTCGATTTTTTT
CCTCGAATCTCAACATCTTCACCGGCAGCCGATATCGTGTTCACCACAGC
CAGACGACCCGCTCTGGCAGCCCTGATCACCGGTGATTCCCCGCGATCAT
TGAGTGCATTCTTGTCCACTCCCCTGGCCAGGAGGGTCGACACAACCCCC
TGCGCCCAACCCATGCGGCGGCATTGAGTGCGGTGCCATCCACAAAACGG
GTGTTTGGATCAGAGAGACATCGTAGCCGTCATCTATCTTTGGGTGTTAG
TGGGCCAACGTTAATCGTGGGTGATGGAGCTGCGTGAGAGCGAAGGGGTC
CGAATTTGATGCCGGAGAAAAGTTGGAAAGCCCCAGGCTTCTTTCTTGGG
CTCCCATAACTCGTATGATTAATCCAATGCCCGATTTCTCTCTCGTTTGT
GGGCTTGTCGCCGCATTCTTTTTTTGCTTTTTGGGGTGAACAGACTTCGG
CACTTTTCGATGCCGCTAAAAAGGCCGAGGATCAGATCACCTCTCTCCCA
GAGGAGGACAACCGCAACAGACTCTCCAAGGGGGGCTTTTTCATGCTCTG
CGCTCTGGGTACCGCCAGTTTCTCGAGGGTACGTCTTCGATGACCGATCA
ATAAACTGTGGTTATTCGGGGGGCTGGTGGTCTGCCTCCTTGTCGTTTTG
TCTCTCTATGTTCTCGTTTTGATTGAAGTTTCTAATGTTTTGGGGAGTCT
CGTTGTCTTGCCTTTACCTACACCGTCTTATGGGCGTGCTTTCGTGCTGA
AGGGGTCGATTTCGTTTTTGACCAGCGCAGGAGGCGAACAGCGTCTACCT
TCGGAGGCCGTCATTTGTTTTTGGGGGAAGACATCAACAACGCAAAGCAA
TTAGTGTTTGGTGTGCCCACAACAACACGGTGGTCTAACTGACGTGTGAT
TGCTGCTGTTTTTCTTGTCTGTTTGTTTTCGTGAGCATGACGTCCACGAC
ATCAATCCAGATTATGATATCTTGTCTGTGTCATGTGTCTGTGTCATGTG
TGTCATGTGCGCGTTTGTCGTGCTGCTTGCTTGGTGCGTTGACCTGGCTG
CTACCCCGTTTCTCGCTAACCCAATTACTGTGCTTCTGCAGGCTCAAAAG
GAGCGGACGGGCAAAGTGCCCAACTGCAGGCGATCCGCAGGAAAGTGGAA
ACGATTCCGACAGCGTCTTGACGGTGAGAGAGCATTCAAGCAGTTTGAGG
TAGAAGCATGAGTTCTCATTCTACAAACAGATTTTTTAACTCCCTGGCTT
CTCAACGTATTAGTAGGAACGCGCTAGTTGACGCTCCTCCAAGTCCCAGT
GAATCACAGAGGTCAATAACCTGTGCATAGCTGGGACTGCTTAGCGTTGG
GAAGTAGCCGTGTTGCAACCGCTTCTAGGACACTGACAATAGTTGAGCGC
ATAAACTCTAATGGGACCGGTGAGCACTGTGTCGGTGATGGGCGCGGTAC
AGTAGTCATACATTCTCTGCTCTCCTGTCGCGAATATGTATATTTGTCTG
GTATTGCCACATTTTTGTCGCCGTCACTGCCCCAACCGGTGCTGTCTTTT
CCTTTTCGCAGGCATTTTGTCTTGGAGTACCCCGGGCAGCAACTTCCCTC
TGAGTCGTCAGGTGCTGAACGTGGCACTGGTCGTGCAGGGTGAGAAGAAA
CTATCAAAGGGAAAGAAAGAAGGAGAGCGCCGTGCTATTGACGATGGTGA
ATTGAGCATCCAGCAGTCTTATTTTGGGGGCTGAAATGAAACTTACGAGT
CGCAGCTGGGGAAAAACGCGTTGGTTCCGGTTGGGTTTACAGCTTTCCTT
TTTGCCCGAGTTGGCGAGGGGCATGTTGCAATCACATCATGCAATCAGAA
GAGAGCAGAGGTGTGTGGATGGTTTTCCTTGGTCAAGGTGTAATGCTTCC
CGCCCCCCGTTGACTTCCCCTGGCGTTTCCCGTTTCGTGCAGGGTATCAG
GTTGTGTTGGAGGGAGATGACCCGGAAGGGAGACCGGGCTGGGCTTACCC
GTTGGGAGCATGTCTGATCGCCTACTTTTTCCTGCACGCGTCGCTGCGGA
TGTTGGCGGAAGGGGCCCGGTCGTACATGAAGCAGTGGCGGTGAGAAAAT
AGAATGCCAGGAATGAAACAAAACTTGTTTTTATTTTTTTATGTTGTTTG
TTTCGTTTTGCTCTTTTTCTCTCATCGTGGCTGCGACACAATGCCCCATG
TTTTTTGGGGTTTGTTTCTCCGGGAGGGAAAATGAGAGTGAGAGGATCTG
AGCAGTAGACCATGGGGCGCATTCGGTTTGTGGTTGGTTAGTTGCCTCGT
TTGCGTGGAGAATGCAGCGGTACTCAATTGTTCAGAAATAGAGCCGCTGC
AAAGAGAACGAAATACCTAGTTTAGACACATGCGCGCATGTTCCGTTTTT
CGCTTCTGTGTTTAGTTTTCACTTTTCCTCCATTACTCGCATTCGTGCAT
GTCGCTGTGTTCGCTTGACACTCGACACGTCAGGAGCATAGTGTGGTGTA
GGCGCCGTGCAAGCGCGTCTTTGTGTACGGCGTTTTCGCCGCCTCTTACC
GCTGCATTATTTCAACCTTCGTAACCGGTGTAAATGCTTTCATGCTTGCC
GAAACGCTCGTTGGTCCCTGGCCCGCCCCGCCGATGAACACGTCATGCAA
TCGTGATGAATCGTTTTTTTGTAAACAGCAGGCATGGTCTCGGGATGTGC
TTGAACCTGATCGGCGTGGCATACTACACGGGTTTCTGGTTTGACGGGGA
AGGCTGGCGGAGCTTGTACCACATATTGCAGGCGTCTCGTGTCATCGTTC
TTTGGAACGTTCTGCACCGGTTGGGGTCCACCAGCTCGGGTGAGAGGGAT
GCAAGGAAATGGAAAGTATCTAAAACCGAAATTGCGGGCACCGCTTGTAT
TGCTCCTAGGGCTGCTAGGGTGCTGCTAGCGGTGGTGGTGGTGATGTTTC
GGTGTGAAAGGGCGTTCTCGACAAGGGCATGATGGTAAGCTGTGTGATTT
GGTGTGAAAATGAAAAATCTCTTTTTGCCAAATGACGTCCGGGATTGAAA
TAGCGCTCTTCAGCTCTGATGTTTCAACAGTAGTGCTAATGCGCTCCCGC
TCCTTCACTCCTTCACTGTGCGTCGGTCTGTTATTTGTAACCCATTCCGC
CGCTTTACGTATACGTATAATGTGTGTTGATAACACCAAATGTGCATGAG
CTCGTGTTTCCTCGACGTTTTCGTGGGTGGCGTACGCGTCACGTGCACAC
GAATGTGTTTTGTTCGCCGCATCCCTACAATTTTCAAAGGGCATGACCCA
CTTCCTCACCCCCCGCGCGCGTGCCCTCCTGCCTTCCGCTGCTGCCCGCA
TGCATCATGCGCCACCCTTGGGGGTTGAATCGCCAACCCTGCAGAGGTCG
CAACGCGGCTAGAGTTCGTGTTTCCGGCGGTGCTGCGAGCGTCGTTCGTG
CTCTTTTCGGTCACGTACTCCTACGCCGTCTTAGCGTACGCCATGTACTG
TTCCACGCCCTTGGGCACACAGCCCCTCGAAGGCGTGGCGGACCACAGCA
TGATGAAGAGGTCGGTGATTGGGGAAGCTTGACTAACGTCTTCCCTCGCC
GTGTGCTATTGGCTGCGGTTTGGATGTGGATGTGTGCGATATGTGCCCAC
CAAAAGGACATGTGTATAAGGAGAGAGGGCACAAGAACGCTCATCTTGCT
TGGTGTCCCTAACCAACCCCAAACAAATACCCTCTACTCGTTGTGTTGCT
GTGAAGGTGGGCGGTCTACAAGGACGTTATTTCTTTCGCGTCTTTGTATC
AGTCCTTCGCTTCCCTGACCGACGTCATCATGCTGTCAAACTGGCCAATG
TTTATGGATGCGGCGGGCGATGTTGGCGGTGTGGTGACCGCGAGGATATT
CTTCTACTCCTTCAAGGTAAGCGATTGGAGACTTGTACACGCGCGTTTGT
TTATCTATTTTGGATGGTTTTTTTACGTTGGTTTTGTGTGTTTCTTCGCG
TGTTCTGTTTTTGGCTTTGAATTTGCCTCCAACGATGCTTTTGGATCCAC
CGGCGGGTGTCGGCATGTTTCTCGTGCCTACGGTTGCGTGTTTGACGTTG
GTTTTGTTTTTTTCTTGTGTGGTGGAACGACCGGTTCACTGCTGTAGTTT
TGATGAACTGGCGGACGCATGGTATCGTCGGTACACGCGAGGCGTTGCGC
TCGTGTACTCGCCGGTAGCGACATTATTCACGTCCGTAGTCAACAATTAA
CAGTGCGTGGCGACGACTAATGCCTCCCGCCTCAACCCCCCGGTTTCATG
TTCAGGTGTTGACGTTCTACTTCGTTATGCCGGTCATGCTCGGCTTTATC
GTCCAGTCCTACATGGCTGCACAACTTCCGGGTTGCGACCCTACCAACAA
GCCAGGCTTGTCGGCCGCCTCACGCCCCGGCGGCCCTAGTGACGCCCTGT
CGTTAAACAGAAGATCGCAAAAGGACTTGGGAAGCGGGGCGATGGGCGGG
GGGCGGGGGGCATGGGAAGCCGATCCGTTGTTGTCTGGCCGATCTCAGAG
AGAAAAGGGAGGGGGGCCGGGGATAGGGGCGTGGGCAGGGGTCAGCGACC
TGTCGTCCTCGAGCAGGAGGTCCTATAGTGATGGGTCAGATGGGCCAGCA
GCGGCGGGAGAGGCGAGGGCGGGAGCGGGGGGAGGGGTCGGCGACGGCTT
TGGAAGTGTTGGTGGCAAAGCTGTCGGTAAGAACGGAGCCGGGAGCAAGG
AGGGCGCCAGGTGAGAAGAAAAACGAAGGTGTTGTGCTTAGTTGTTAGCG
TCCGTGACTTTGGTGTGGCGGTGTGTCGCGGATGGTGCTGTTTGCGAAGG
TGGTGGTGATTGTGCTGCTGTTGTTGTTTTTGGCGGTGGTGATGTTTGCT
GTTGCTTTGCTCTCATTGTTTCCCACCGTGGCGCTACTTGCGGTATGCGT
TGTAAACTTCGCCCGACGCGAGTGACTTTCCTTGTTGTTCCTGGCAAGAA
ACGCGTGTAAGCCAAGCACCTCGTTTTTCTACATACCATGGCGCTGCCGT
GCTTCAGCATGCTGCAGACGAGGTCCGGCTCTCGCCGGTAACGTCAGAAC
TGCCAATGTTGTTAACCTTCACATTGAAGTTCGCTCCACGAGAGTAAGCG
TTCACCTAGACCTTCCGCTCTCTCACGCCTTTGCTCCTTGGCATCTGCTA
GCGGCACACCGTACGGCGGAAAGTTCGGGTACTCGACGCTGGCCGACGGC
GCTCAGAAGGAAGTTGACGTGCTCGCCTTGGTCGACGAGGGAACCAAGAA
TGGCGTGCCTGGGGGCGGTGCTGTCGACCTTGGTGGTGATATGGAGGTTG
CTCTCAACGACGATGACTCTTTGTCCTCCTCGGAAGAAGACAGCAGTGCT
CCTGTGAGTTTATCGATATAAGCATAATCACACTCCTTGCCTTGTTCACT
CGGGCGACAGCACCTGGTCGGTACGTTCAAGAGCTACATTTAGAGCTGAC
GCGAAGGCGAAGGCCTTTGGTGGTCGGTAGTATTACTCGGCTACTGCTGC
TGCGGAAGTTCGTTGGTTCGTAGCTTTCTGTTGCACGTGCTATTGTTGAC
TGCGTTGGCGCATCGCGTCTACCTCCAGCTTTCTGGTCGCTGAAAAGCGC
CCATCCTCCTGCTTTGCTGCTTGTTTTTGAGTTTTTGTTTCCTCTTCATG
CGATCATGCCGCATGTATGAGCTGTCTGTACTTCTCACTTCCGGCAGGCT
CTCTAACGTTACCAGGGGCGGGGCAACCATTCCTTGACCGTTACAACAAC
GCGGGGGAGTTCATTCTTCGCTATTTTTTTCTGCCCTTTTTTCTGCTGGG
CGTGCCCCCTTGCTGTTGCCCTTCGTTTGTTTTGCAATGCCTTCAGGTCG
TCATCACCTCCCACGCTCGTTCGATGTCGCAAATGTTCTGGGGAGCCGAG
CAGGCTAAAGATCACGAACAGGGTGGAACCACGCTGGCGTCGACAGAGAT
GCAAGAAAACCTGACTCGCCTTGAAACAGAGAATGCCAGGTGATCTGCTG
AACCCTGTACCAAGAGATGCGCATGTGTGTTGACACCATATTGTTTCCAC
GTCAAGGAAGGCACCCACGAGTGGGTTACGTTACCGCGAAAGCGCTTGTA
ATTTTTGCAAACCTTTCATCGAAACAACAAAGAGACGCATGATGTGCTGA
CTACGAAGACTAGCGTAGCTCCTTCCCTGGAGCCCGGTTTGCTGCACACT
TTTTTGCGATGCCCCATCATTGTTGGTCGATCTCGTCATGTTGCATGTGT
CTAGCTAATTGTACGGCTTCGTTTGTTTGTACGCTGGCAGTCTTCGCGCT
TTGGTAGATAGCATGCAGATGGACCTCCAGATGGCGAATGCCAGACTTTA
TGACGAGCTGCAAACGTCTTCGAGAGACCGCAGTCCGTCCCCAGCACGGG
TAAGAGCAAAAAGTGAAACGAGAAAGGCATTGCTGCAAAGCTCAATTCTG
TGGGATTGCATTTTTCGTTTAGCTGCACAACGTGGGGCGGCAACTGTCCT
TGGCGCTTGTGTTTTATGAGACAACCTCGAGCAGATGCCATGAGTTTCAC
GAGACGCACTCATTTGACGGACCGCAGCCCTTCCCTCGGTTTAGGCTAGC
CGAGAATCCAGTCCGGGTCCGTGATGCGGGAGCGTATGCAATGGTTTAGT
GTCGCTATTCAGGAGATGATGTATACTTTAATTTTGCGTATGAATGTATC
ATTTACACGAAAGAGGCGGAAATGGCAGCCGCTAAGACAGCTTTTACCTG
CGCAACCGCACAGGAAGCACCTGCGTGGTAGTACATGCCGACGGGGTAAG
TAGTGCATGAGACGTATCCGTTGGCGTCCATGGGCCTATGACAAAAACGA
GAGCAGGAGTCTTTAACGAAAACTCTCGCGCCTGGTTTATTTTTCATGTT
TTGTGTTCGTCATTCTTTTCTCCGCAGGCGTCTTCTCGGCGAGGCGTCGG
TGGCATTGATGTCTCTGGACTCGGAGGAAAGCCTTCGTCTTCCATGTCTC
CGGAGAACATGGCTCCTCTGCGCAAACGCGTCGGTTCTGCGAACTCGTCG
ATCGGAGGAGAGCTGGAGGCGATCGTCGAAACCGAGGATGAAGAAGTCGG
CACTGTGTGATTTGCGGGGTCACTTGTACTTCTGGTTCCTAGGCTCCGCT
GTATCTGGTTGGTTTCGGGGCTTTGTCGCCGGTGGTTGACTGGCCGACTG
CCATCGTTTTTCACGACATACACATTTTTCACCTGATTTTGTTTCTCTTG
TTCCTGTTGTGTTGTTTCTGTTGATTTTTGTGTTGTTTTGGTTTATAGTT
GTGGTTTGATCTTCTTGAGTTTCTCCCGTGGCTGACCTCTGGTACTCCAC
TCCTGTGGCTCAGGCCACTCTTCAGCGCCCCGATGCGGACATGACGCACA
CCTGAAAATGCCGAAGGGGCGGGTGATGGGGGGCTGCAAGTTTTGAACCA
CCTGTGTGTTGCTAGCAAATACATGGCTACAGGAGGTCAACCAGTGGGCG
GTAAGGTGGTTATTGCACCTTCGCTTGTCCAGTCGATAGACGTACCTCCT
TGATATTATTTTTGTAGGTCATAACTCCCAGTTAAACTGCGATCATGTCG
CGGGATGAAGTGCTGTAAGCCTCTCTCGAACGAGAGTCGTTACAGCAGTA
CATCAATAGTAGGATGGTGTATTTTTTTAACTTGTTTTCATTCATCGGTT
TCAAGACCACTTCCATGGACATCATTCAAGTGTCAGTTCCTTTTCTGCGA
CCCAGAGAGACCATCCAGCTCGAACAAACTCTCAACCGCGTCTGTGCTGA
CAACATACAGTTGAGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:975547..988862-

>mRNA_C-linearis_contig9.16513.1 ID=mRNA_C-linearis_contig9.16513.1|Name=mRNA_C-linearis_contig9.16513.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5880bp|location=Sequence derived from alignment at C-linearis_contig9:975547..988862- (Chordaria linearis ClinC8C monoicous)
ATGGTGGAGATACAGAGATGTCTACCCTGCATGGGCATGCAGAGGCTCCC
TGAGGCACTCAACTCCAACTCTCTGCACATAGATGGTGGAGATACAGAGA
TGTCTACCCTGCATGGGCATGCAGAGGCTCCCTGAGGCACTCAACTCCAA
CTCTCTGCACATAGGTTGGCGACCTACCTTGCTGGGATCGATGTGGGTGG
AGTGCTGGCTGTGGCTCCTCTACGCGCACGACCTTTACCAAGTCACTCTC
TCCAGGTTGGCGACCTACCTTGCTGGGATCGATGTGGGTGGAGTGCTGGC
TGTGGCTCCTCTACGCGCACGACCTTTACCAAGTCACTCTCTCCAGCAGC
ACCTACGTTCACAAGCGCATCGATGTCTCTATCAGAGGCAGCCCCTCAAC
GGGGGGTAAAGAGTCAGCGCGGTCAGCTTCATTGGCCAAGCTGCCGCCGT
GGCAGCTGGCGCGGACGTGCATGGTGGCGTTGTTAGGCTTCGGCCTGCTG
ACCAACATTTTCGCACACTATGTGTTTGGGATCACGTGGCACAGCAGCAC
CTACGTTCACAAGCGCATCGATGTCTCTATCAGAGGCAGCCCCTCAACGG
GGGGTAAAGAGTCAGCGCGGTCAGCTTCATTGGCCAAGCTGCCGCCGTGG
CAGCTGGCGCGGACGTGCATGGTGGCGTTGTTAGGCTTCGGCCTGCTGAC
CAACATTTTCGCACACTATGTGTTTGGGATCACGTGGCACAGGTGGAGCC
GAGTAACACTGCCTTTTCTTTTCATCAGCCGGCGGACATACCTTAAACAC
TTCGTAGGAGGCATGATAAGGGTCCTTCCTAGGTGGAGCCGAGTAACACT
GCCTTTTCTTTTCATCAGCCGGCGGACATACCTTAAACACTTCGTAGGAG
GCATGATAAGGGTCCTTCCTAGGATGCTTCCTGTGGCGTTCCTGATGTCG
TTCGTGGTGTTCTTCTATGGATTTCTTGGATACATCGTCTACCGGGACGA
ACCGATGCTTCCTGTGGCGTTCCTGATGTCGTTCGTGGTGTTCTTCTATG
GATTTCTTGGATACATCGTCTACCGGGACGAACCGCGAGACTCTAGTATT
CTGGGAGACTTGGACCTGTTCAGCGAACCGACTTCATCGGCACTGACGTT
TCTGCGCATCTTCACGTCGATCCCCTTCATGCTGGATGTCGAGCAGATCT
ACAGAGGGAAAAAGGCGAGACTCTAGTATTCTGGGAGACTTGGACCTGTT
CAGCGAACCGACTTCATCGGCACTGACGTTTCTGCGCATCTTCACGTCGA
TCCCCTTCATGCTGGATGTCGAGCAGATCTACAGAGGGAAAAAGGGAATT
CAAGTGATGGGGCTTTCGTACGGCGTCATCATGGTTATTTTTCTCGGCGC
TCTGGTGCCCGCCGTTGCAAACCGCAACTTCCAGCACCAGTCGAAGGAAA
GGGAATTCAAGTGATGGGGCTTTCGTACGGCGTCATCATGGTTATTTTTC
TCGGCGCTCTGGTGCCCGCCGTTGCAAACCGCAACTTCCAGCACCAGTCG
AAGGAAAGCTACAACTGGGTCAAGGAGCAGCGTAAGCTTGCTCTGACGCG
CGCGTACATGCTGCTCAAGCGGGGGGACGGGACTGTCGGCAGGGATGACT
GGGTACGGCTCATGGCGTGCCTTCGCCCCGACTGCGACGCAGCTCACCTA
CAACTGGGTCAAGGAGCAGCGTAAGCTTGCTCTGACGCGCGCGTACATGC
TGCTCAAGCGGGGGGACGGGACTGTCGGCAGGGATGACTGGGTACGGCTC
ATGGCGTGCCTTCGCCCCGACTGCGACGCAGCTCACACTTCGGCACTTTT
CGATGCCGCTAAAAAGGCCGAGGATCAGATCACCTCTCTCCCAGAGGAGG
ACAACCGCAACAGACTCTCCAAGGGGGGCTTTTTCATGCTCTGCGCTCTG
GGTACCGCCAGTTTCTCGAGGACTTCGGCACTTTTCGATGCCGCTAAAAA
GGCCGAGGATCAGATCACCTCTCTCCCAGAGGAGGACAACCGCAACAGAC
TCTCCAAGGGGGGCTTTTTCATGCTCTGCGCTCTGGGTACCGCCAGTTTC
TCGAGGGCTCAAAAGGAGCGGACGGGCAAAGTGCCCAACTGCAGGCGATC
CGCAGGAAAGTGGAAACGATTCCGACAGCGTCTTGACGGCTCAAAAGGAG
CGGACGGGCAAAGTGCCCAACTGCAGGCGATCCGCAGGAAAGTGGAAACG
ATTCCGACAGCGTCTTGACGGCATTTTGTCTTGGAGTACCCCGGGCAGCA
ACTTCCCTCTGAGTCGTCAGGTGCTGAACGTGGCACTGGTCGTGCAGGGC
ATTTTGTCTTGGAGTACCCCGGGCAGCAACTTCCCTCTGAGTCGTCAGGT
GCTGAACGTGGCACTGGTCGTGCAGGGGTATCAGGTTGTGTTGGAGGGAG
ATGACCCGGAAGGGAGACCGGGCTGGGCTTACCCGTTGGGAGCATGTCTG
ATCGCCTACTTTTTCCTGCACGCGTCGCTGCGGATGTTGGCGGAAGGGGC
CCGGTCGTACATGAAGCAGTGGCGGGTATCAGGTTGTGTTGGAGGGAGAT
GACCCGGAAGGGAGACCGGGCTGGGCTTACCCGTTGGGAGCATGTCTGAT
CGCCTACTTTTTCCTGCACGCGTCGCTGCGGATGTTGGCGGAAGGGGCCC
GGTCGTACATGAAGCAGTGGCGCAGGCATGGTCTCGGGATGTGCTTGAAC
CTGATCGGCGTGGCATACTACACGGGTTTCTGGTTTGACGGGGAAGGCTG
GCGGAGCTTGTACCACATATTGCAGGCGTCTCGTGTCATCGTTCTTTGGA
ACGTTCTGCACCGGTTGGGGTCCACCAGCTCGGCAGGCATGGTCTCGGGA
TGTGCTTGAACCTGATCGGCGTGGCATACTACACGGGTTTCTGGTTTGAC
GGGGAAGGCTGGCGGAGCTTGTACCACATATTGCAGGCGTCTCGTGTCAT
CGTTCTTTGGAACGTTCTGCACCGGTTGGGGTCCACCAGCTCGGAGGTCG
CAACGCGGCTAGAGTTCGTGTTTCCGGCGGTGCTGCGAGCGTCGTTCGTG
CTCTTTTCGGTCACGTACTCCTACGCCGTCTTAGCGTACGCCATGTACTG
TTCCACGCCCTTGGGCACACAGCCCCTCGAAGGCGTGGCGGACCACAGCA
TGATGAAGAGAGGTCGCAACGCGGCTAGAGTTCGTGTTTCCGGCGGTGCT
GCGAGCGTCGTTCGTGCTCTTTTCGGTCACGTACTCCTACGCCGTCTTAG
CGTACGCCATGTACTGTTCCACGCCCTTGGGCACACAGCCCCTCGAAGGC
GTGGCGGACCACAGCATGATGAAGAGGTGGGCGGTCTACAAGGACGTTAT
TTCTTTCGCGTCTTTGTATCAGTCCTTCGCTTCCCTGACCGACGTCATCA
TGCTGTCAAACTGGCCAATGTTTATGGATGCGGCGGGCGATGTTGGCGGT
GTGGTGACCGCGAGGATATTCTTCTACTCCTTCAAGGTGGGCGGTCTACA
AGGACGTTATTTCTTTCGCGTCTTTGTATCAGTCCTTCGCTTCCCTGACC
GACGTCATCATGCTGTCAAACTGGCCAATGTTTATGGATGCGGCGGGCGA
TGTTGGCGGTGTGGTGACCGCGAGGATATTCTTCTACTCCTTCAAGGTGT
TGACGTTCTACTTCGTTATGCCGGTCATGCTCGGCTTTATCGTCCAGTCC
TACATGGCTGCACAACTTCCGGGTTGCGACCCTACCAACAAGCCAGGCTT
GTCGGCCGCCTCACGCCCCGGCGGCCCTAGTGACGCCCTGTCGTTAAACA
GAAGATCGCAAAAGGACTTGGGAAGCGGGGCGATGGGCGGGGGGCGGGGG
GCATGGGAAGCCGATCCGTTGTTGTCTGGCCGATCTCAGAGAGAAAAGGG
AGGGGGGCCGGGGATAGGGGCGTGGGCAGGGGTCAGCGACCTGTCGTCCT
CGAGCAGGAGGTCCTATAGTGATGGGTCAGATGGGCCAGCAGCGGCGGGA
GAGGCGAGGGCGGGAGCGGGGGGAGGGGTCGGCGACGGCTTTGGAAGTGT
TGGTGGCAAAGCTGTCGGTAAGAACGGAGCCGGGAGCAAGGAGGGCGCCA
GGTGTTGACGTTCTACTTCGTTATGCCGGTCATGCTCGGCTTTATCGTCC
AGTCCTACATGGCTGCACAACTTCCGGGTTGCGACCCTACCAACAAGCCA
GGCTTGTCGGCCGCCTCACGCCCCGGCGGCCCTAGTGACGCCCTGTCGTT
AAACAGAAGATCGCAAAAGGACTTGGGAAGCGGGGCGATGGGCGGGGGGC
GGGGGGCATGGGAAGCCGATCCGTTGTTGTCTGGCCGATCTCAGAGAGAA
AAGGGAGGGGGGCCGGGGATAGGGGCGTGGGCAGGGGTCAGCGACCTGTC
GTCCTCGAGCAGGAGGTCCTATAGTGATGGGTCAGATGGGCCAGCAGCGG
CGGGAGAGGCGAGGGCGGGAGCGGGGGGAGGGGTCGGCGACGGCTTTGGA
AGTGTTGGTGGCAAAGCTGTCGGTAAGAACGGAGCCGGGAGCAAGGAGGG
CGCCAGCGGCACACCGTACGGCGGAAAGTTCGGGTACTCGACGCTGGCCG
ACGGCGCTCAGAAGGAAGTTGACGTGCTCGCCTTGGTCGACGAGGGAACC
AAGAATGGCGTGCCTGGGGGCGGTGCTGTCGACCTTGGTGGTGATATGGA
GGTTGCTCTCAACGACGATGACTCTTTGTCCTCCTCGGAAGAAGACAGCA
GTGCTCCTCGGCACACCGTACGGCGGAAAGTTCGGGTACTCGACGCTGGC
CGACGGCGCTCAGAAGGAAGTTGACGTGCTCGCCTTGGTCGACGAGGGAA
CCAAGAATGGCGTGCCTGGGGGCGGTGCTGTCGACCTTGGTGGTGATATG
GAGGTTGCTCTCAACGACGATGACTCTTTGTCCTCCTCGGAAGAAGACAG
CAGTGCTCCTGTCGTCATCACCTCCCACGCTCGTTCGATGTCGCAAATGT
TCTGGGGAGCCGAGCAGGCTAAAGATCACGAACAGGGTGGAACCACGCTG
GCGTCGACAGAGATGCAAGAAAACCTGACTCGCCTTGAAACAGAGAATGC
CAGGTCGTCATCACCTCCCACGCTCGTTCGATGTCGCAAATGTTCTGGGG
AGCCGAGCAGGCTAAAGATCACGAACAGGGTGGAACCACGCTGGCGTCGA
CAGAGATGCAAGAAAACCTGACTCGCCTTGAAACAGAGAATGCCAGTCTT
CGCGCTTTGGTAGATAGCATGCAGATGGACCTCCAGATGGCGAATGCCAG
ACTTTATGACGAGCTGCAAACGTCTTCGAGAGACCGCAGTCCGTCCCCAG
CACGGTCTTCGCGCTTTGGTAGATAGCATGCAGATGGACCTCCAGATGGC
GAATGCCAGACTTTATGACGAGCTGCAAACGTCTTCGAGAGACCGCAGTC
CGTCCCCAGCACGGGCGTCTTCTCGGCGAGGCGTCGGTGGCATTGATGTC
TCTGGACTCGGAGGAAAGCCTTCGTCTTCCATGTCTCCGGAGAACATGGC
TCCTCTGCGCAAACGCGTCGGTTCTGCGAACTCGTCGATCGGAGGAGAGC
TGGAGGCGATCGTCGAAACCGAGGATGAAGAAGTCGGCACTGTGTGAGCG
TCTTCTCGGCGAGGCGTCGGTGGCATTGATGTCTCTGGACTCGGAGGAAA
GCCTTCGTCTTCCATGTCTCCGGAGAACATGGCTCCTCTGCGCAAACGCG
TCGGTTCTGCGAACTCGTCGATCGGAGGAGAGCTGGAGGCGATCGTCGAA
ACCGAGGATGAAGAAGTCGGCACTGTGTGA
back to top