mRNA_C-linearis_contig9.16456.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig9.16456.1
Unique Name	mRNA_C-linearis_contig9.16456.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: D7FWX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX5_ECTSI)

HSP 1 Score: 506 bits (1304), Expect = 2.070e-179
Identity = 267/298 (89.60%), Postives = 281/298 (94.30%), Query Frame = 1

Query:  118 MRAACLLMVGLGG-AAAAASDSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            M+A CL+ +GL G AA AASDSVSAYHMSCHGVYNKIARQAMGDIKELQ+RVD+GEACPALGEKADSICNQALEQFSTDAADTENDP+KESIFDEKVEELET+LDLPLQLVYMKQLTLLREKALQ+YKTLAKGSETSDYQAMVAADQWF+KEAEASTRAGSSWEF+AVRNSLQTAMNEMAQRGKKATDAAVRA QQTSTAMQYLQMQQQQL+ALQNQLYGGQPSPWNFGAAYRIPD+N+NLSGTYQQGKANLQ           MTCVPDEYSSMLG+QGFTHGVGPGNLGLSVNLSI
Sbjct:    1 MKATCLMFLGLAGRAAGAASDSVSAYHMSCHGVYNKIARQAMGDIKELQTRVDSGEACPALGEKADSICNQALEQFSTDAADTENDPTKESIFDEKVEELETSLDLPLQLVYMKQLTLLREKALQRYKTLAKGSETSDYQAMVAADQWFVKEAEASTRAGSSWEFSAVRNSLQTAMNEMAQRGKKATDAAVRAAQQTSTAMQYLQMQQQQLAALQNQLYGGQPSPWNFGAAYRIPDSNINLSGTYQQGKANLQ-----------MTCVPDEYSSMLGAQGFTHGVGPGNLGLSVNLSI 287

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A835YIM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM6_9STRA)

HSP 1 Score: 343 bits (879), Expect = 9.400e-115
Identity = 181/292 (61.99%), Postives = 220/292 (75.34%), Query Frame = 1

Query:  133 LLMVGLGGAAAAASDSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            L    L G AAAAS +   Y ++CH V+ K+   AM DI  L+S+V+ GE CP LG KAD+ICNQALEQFS++A D END + ESIFDEKVEELE  LD+PLQ+VY++QL L+REKALQ+YK  AKGSETSDYQAM+AADQ++ KEAE+STR GS W++A  R+SLQ+ MNE+AQR KKA DAA++A QQ STAMQ+             QLYGG  SPWNFG AYRIPDT++NLSG YQQG+AN+Q           M+CVPDEY+ +LG+ GFTHGVGPGNLGLSVNL+I
Sbjct:   10 LAAAALAGTAAAASANPDMYSLTCHKVFCKVTASAMKDIDALKSKVEGGELCPGLGAKADAICNQALEQFSSEAPDAENDDALESIFDEKVEELEKTLDMPLQMVYLRQLALIREKALQRYKAAAKGSETSDYQAMIAADQFYAKEAESSTRQGSGWDYARERSSLQSTMNELAQRSKKAADAAIKAAQQQSTAMQFXXXXXXXXXXXXQQLYGGS-SPWNFGVAYRIPDTHINLSGNYQQGRANVQ-----------MSCVPDEYAPLLGASGFTHGVGPGNLGLSVNLNI 289

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A6V2EIW0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EIW0_9STRA)

HSP 1 Score: 267 bits (683), Expect = 7.040e-85
Identity = 142/274 (51.82%), Postives = 189/274 (68.98%), Query Frame = 1

Query:  190 YHMSCHGVYNKIARQAMGDIKELQSRV-DAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            Y   C  V  +I  +A   I++++  + D G+  P  G KAD+ICNQALE+F+ +A D  +D    + +D K+EELE ALD PLQ++Y++QL ++REKALQ Y+  ++ SE+SDY+AM+ AD  F +EAE +TR GS W++A  R+ LQ+ MN+MAQ  KK  D  +++  Q STAMQYLQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+ N Q           ++CVPDEY+ +LG  GFT+GVGPGNLGLS+NLSI
Sbjct:   42 YASLCESVKCQIVEKASQSIEDMRRMIMDEGQTAPEFGAKADAICNQALEEFAQNAPDAGDDALAAATYDRKLEELEAALDAPLQVLYLRQLAIVREKALQSYRASSRSSESSDYEAMLQADSMFQREAEEATREGSDWDYATERSYLQSVMNDMAQTSKKLIDVQMKSANQQSTAMQYLQQQQQMIQQLQMQLYG-QSSPWNVGLAYRIPDTNFNLQGSYQQGRGNFQ-----------LSCVPDEYAPLLGPNGFTNGVGPGNLGLSLNLSI 303

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: B7G8P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P6_PHATC)

HSP 1 Score: 259 bits (662), Expect = 1.220e-81
Identity = 140/280 (50.00%), Postives = 189/280 (67.50%), Query Frame = 1

Query:  172 SDSVSAYHMSCHGVYNKIARQAMGDIKELQSR-VDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            +D++ AY  +   V  K+ + A   I++L+S  VD G+   A G   ++ICNQALE F++ A +  +D +K + FD K++ELE ALD PLQ++Y+KQL  LRE ALQ+Y+   K S  SDY+AM+ AD  F++EA+ S R GS W++ A R  LQ+ MN +A+  +KA D  + + QQ  TAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q           ++CVPDEY+  LG  GFT+GVGPGNLGLS+NLS+
Sbjct:   41 NDTIEAYEQALESVKAKVLQTAASSIEDLRSEIVDGGKVVEAFGTATETICNQALEGFASAAPEAGDDANKAATFDRKLQELEAALDAPLQVLYLKQLGFLREAALQRYRAATKTSGASDYEAMLQADSQFVREADGSIREGSDWDYTAERAFLQSVMNNIAESSRKAMDVQMNSAQQQQTAMQFLQSQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ-----------LSCVPDEYAPFLGPNGFTNGVGPGNLGLSLNLSV 308

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: B8CCD1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD1_THAPS)

HSP 1 Score: 257 bits (657), Expect = 1.680e-81
Identity = 147/281 (52.31%), Postives = 194/281 (69.04%), Query Frame = 1

Query:  169 ASDSVSAYHMSCHGVYNKIARQAMGDIKELQSR-VDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            AS SVS  H+        I+  A   I+E + + VD G A P  G KAD IC+QA+E+F+  A    +D +  S +  K+EELE++LD PLQ++Y++QL+LLRE+AL  Y++ +K S+ SDY+AM+AAD  F++ AE+STR  S+W + A R+ LQT M+E AQ  KK T+  V++ QQ STAMQ+LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q           ++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLSI
Sbjct:    4 ASLSVSIIHL--------ISYAAHVQIEEARRKIVDEGTAIPDFGAKADEICSQAIEEFARSAPSPSDDNTASSAYARKLEELESSLDAPLQVLYLRQLSLLREQALSSYRSASKASDASDYEAMLAADAQFLRAAESSTRKASTWTYDAERSHLQTVMSEFAQTTKKLTETQVKSSQQQSTAMQFLQHQQQMIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ-----------LSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSI 264

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A7R9WU24_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WU24_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.250e-78
Identity = 144/291 (49.48%), Postives = 190/291 (65.29%), Query Frame = 1

Query:  139 MVGLGGAAAAASDSVSAYHMSCHGVYNKIARQAMGDIKELQSR-VDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            M+  GGA AA     S Y     GV  ++   A G I+ L+S+ V+ G      G +AD+ICN+ALE F+  A D  +DP+  + +D+K+E+LE ALD PLQ++Y++QL LLRE ALQ+Y+  +K S  S+Y+AM+ AD  F ++AE STR GS W+F A R+ LQ  MN +A+ GKKA D  V++ QQ  T M +L      +  LQ QLYG Q SPWN G AYRIPDTN NL G+YQQG+AN+Q           ++CVPDEY+  LG  GFT+GVGPGNLGLSVNLS+
Sbjct:   32 MIPRGGANAA-----SGYATELEGVKLQVLDAATGSIESLRSKIVNEGTIIDGFGGQADTICNKALEDFAKSAPDAGDDPTAAAEYDKKLEQLEAALDAPLQVLYLRQLALLRENALQRYRAASKTSGASEYEAMLQADGLFTRQAEDSTREGSDWDFTAERSYLQAVMNNIAESGKKAVDVQVKSAQQQQTTMAFLXXXXXTIQQLQMQLYG-QSSPWNVGVAYRIPDTNFNLQGSYQQGRANVQ-----------LSCVPDEYAPFLGPNGFTNGVGPGNLGLSVNLSV 305

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: W7TWU4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWU4_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.000e-78
Identity = 143/298 (47.99%), Postives = 188/298 (63.09%), Query Frame = 1

Query:  118 MRAACLL-MVGLGGAAAAASDSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            MR  CL+ MV + G      DS   Y + C   + K  + A  +I+ L+  V  G+     G +AD ICN AL  F+ +A D + DP K  I D++VEELE +LD PL +++++QL  LR+KALQ+YKT AKG+ETSDY+AM AAD +F  EAEA  RAGS W++AA R SLQ  MN +AQ+ KK  D   +A Q     M  LQ  Q Q+  LQN L GG  SP NFG +YRIPDTN+N+  T+QQGK N+Q            TC+PD+ +  LG QGFTHG+GPGNLG++VNL++
Sbjct:   73 MRGTCLVVMVVVMGMTVVRGDSADLYAVQCAKAFGKALKAATTEIESLKGEVAEGKLVSGFGARADGICNTALSTFAMEAPDADRDPIKVQIHDKQVEELEKSLDPPLNVLFIRQLLTLRDKALQRYKTQAKGTETSDYEAMQAADAFFTSEAEACLRAGSDWDYAAERASLQQTMNFIAQKNKKLLDVKSQAAQTQQQTMALLQQXQSQMMQLQNALGGG--SPLNFGLSYRIPDTNINVQYTFQQGKTNVQ-----------FTCIPDDQAPFLGPQGFTHGIGPGNLGVTVNLNV 357

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A7S4J3B5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3B5_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.150e-77
Identity = 139/277 (50.18%), Postives = 184/277 (66.43%), Query Frame = 1

Query:  181 VSAYHMSCHGVYNKIARQAMGDIKELQ-SRVDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            +S Y   C  V + +  +A   I  L+ S VD G      GEKAD ICN+ALE+F+  A D + D S  S ++ K+EELE  LD  LQ++Y++QL LLREKALQ Y+   + +E SDY+AM+ AD  F++ AE STR GS W+F++ R+ LQ+ MN++AQ  KK  D  ++A ++ +  MQ LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN N+ G+YQQG+ NLQ           ++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:   37 ISEYSNLCDTVKSSVVEKASQSIDGLRRSVVDEGAIVSEYGEKADEICNKALEEFAKSALDAQGDSSAASTYERKLEELEAVLDASLQVIYLRQLALLREKALQTYRANTRVTEASDYEAMLQADSQFVRGAEESTRKGSDWDFSSERSYLQSVMNDVAQTRKKLIDVQMKATEKQNVIMQVLQQQQQIIQQLQMQLYG-QTSPWNVGMAYRIPDTNFNVQGSYQQGRTNLQ-----------LSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSV 301

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A7S2XTT6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTT6_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.220e-75
Identity = 137/278 (49.28%), Postives = 181/278 (65.11%), Query Frame = 1

Query:  178 SVSAYHMSCHGVYNKIARQAMGDIKELQSR-VDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            + S Y + C  V ++I  +A   I EL+   VD   A    G KADSICNQALE+F+ +A D  +D    + +D K+EELE ALD PLQ+++++QL L+R+KALQ Y+  A+ +ETSDY+AM+ AD  F +EAE + R+ ++W+F++ R  LQ  M E AQ  KK  D  +++ QQ STAMQY          LQ QLYG Q SPWN G AYRIPDTN NL G YQQG+            T+ ++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:   38 AASEYGLQCEAVKSRIIEKANEAIDELRRTIVDQSTAAAEFGAKADSICNQALEEFALNAPDAGDDALAAAEYDRKLEELEAALDSPLQILFLRQLALIRDKALQNYRAAARTTETSDYEAMLQADTLFTREAEEAVRSEAAWDFSSERAHLQAVMFENAQTSKKLIDVQMKSSQQQSTAMQYXXXXXXXXXXLQQQLYG-QTSPWNVGLAYRIPDTNFNLQGNYQQGRG-----------TVSLSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSV 303

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BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Match: A0A7R9W768_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W768_9STRA)

HSP 1 Score: 239 bits (609), Expect = 7.840e-74
Identity = 133/276 (48.19%), Postives = 181/276 (65.58%), Query Frame = 1

Query:  184 SAYHMSCHGVYNKIARQAMGDIKELQ-SRVDAGEACPALGEKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVYMKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSSWEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLSALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTTLQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI 1008
            S Y   C    + +  +A   I + + S VD G    + GEK+D IC +ALE+F+ +A D  +D    S +D K+EELE  LD  LQ++Y++QL LLRE+ALQ Y+   + +E SDY+AM+ AD  F++ AE +TR GS W+F++ R+ LQ+ MN++AQ  KK  D  ++A ++ +  +Q LQ QQQ +  LQ QLYG Q SPWN G AYRIPDTN NL G YQQG+ NLQ           ++CVPDEY+ MLG  GFT+GVGPGNLGLS+NLS+
Sbjct:   32 SDYASLCEATKSSVIEKASQSIDDFRRSVVDEGTILSSFGEKSDDICQKALEEFAKNAPDAGDDSLAASTYDRKLEELEAVLDASLQVIYLRQLALLREEALQTYRANTRVTEASDYEAMLQADSQFVRGAEEATRKGSDWDFSSERSYLQSVMNDVAQTRKKLIDVQMKATEKQNVILQVLQQQQQIIQQLQMQLYG-QTSPWNVGMAYRIPDTNFNLQGQYQQGRTNLQ-----------LSCVPDEYAPMLGPNGFTNGVGPGNLGLSLNLSL 295

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot

BLAST of mRNA_C-linearis_contig9.16456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWX5_ECTSI	2.070e-179	89.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YIM6_9STRA	9.400e-115	61.99	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6V2EIW0_9STRA	7.040e-85	51.82	Hypothetical protein n=3 Tax=Ditylum brightwellii ...	[more]
B7G8P6_PHATC	1.220e-81	50.00	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
B8CCD1_THAPS	1.680e-81	52.31	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A7R9WU24_9STRA	3.250e-78	49.48	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]
W7TWU4_9STRA	4.000e-78	47.99	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7S4J3B5_9STRA	1.150e-77	50.18	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
A0A7S2XTT6_9STRA	2.220e-75	49.28	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7R9W768_9STRA	7.840e-74	48.19	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig9	contig	C-linearis_contig9:119726..126409 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	510.4
Seed ortholog evalue	6.5e-142
Seed eggNOG ortholog	2880.D7FWX5
Hectar predicted targeting category	other localisation
EggNOG OGs	28Q14@1,2QWPT@2759
Ec32 ortholog description	RHD3/Sey1
Ec32 ortholog	Ec-09_004800.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	1013
Cds size	1011
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig9.16456.1	prot_C-linearis_contig9.16456.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig9 119726..126409 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig9:119726..126409-
coding sequence from alignment at C-linearis_contig9:119726..126409-

protein sequence of mRNA_C-linearis_contig9.16456.1

>prot_C-linearis_contig9.16456.1 ID=prot_C-linearis_contig9.16456.1|Name=mRNA_C-linearis_contig9.16456.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=337bp
LLSHRTSVTTADTQQCSNSKRSHSSRPQLRPSCDSQNAIMRAACLLMVGL
GGAAAAASDSVSAYHMSCHGVYNKIARQAMGDIKELQSRVDAGEACPALG
EKADSICNQALEQFSTDAADTENDPSKESIFDEKVEELETALDLPLQLVY
MKQLTLLREKALQKYKTLAKGSETSDYQAMVAADQWFMKEAEASTRAGSS
WEFAAVRNSLQTAMNEMAQRGKKATDAAVRAGQQTSTAMQYLQMQQQQLS
ALQNQLYGGQPSPWNFGAAYRIPDTNVNLSGTYQQGKANLQARTWIGQTT
LQMTCVPDEYSSMLGSQGFTHGVGPGNLGLSVNLSI*

mRNA from alignment at C-linearis_contig9:119726..126409-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig9.16456.1 ID=mRNA_C-linearis_contig9.16456.1|Name=mRNA_C-linearis_contig9.16456.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6684bp|location=Sequence derived from alignment at C-linearis_contig9:119726..126409- (Chordaria linearis ClinC8C monoicous)
CTCCTATCCCACAGGACAAGCGTGACCACGGCAGACACACAGCAGTGTTC
GAACAGTAAGAGAAGCCATTCGTCGAGACCGCAGTTGCGTCCGAGTTGTG
ATTCACAGAACGCAATCATGAGGGCAGCTTGCTTGTTGATGGTGGGGCTG
GGAGGAGCAGCGGCAGCAGCTTCGGACTCGGTTAGCGCCTACCACATGAG
CTGCCACGGGGTGAGTCAAGCTACCCCAACCGTTAGAAACAAGTCGTCGA
GACTCGATTTTCTCTTGCGTGGCACACGGTGGCTGGGCGGCGCCGTTGTT
TTGTCTGGCGAAATGCTCAACTACTTTCCACATCTCTGTTGCCACGTGCT
GCTGAGCGAGCGGCTCTGCTTGCCCCCATCACGCCCTTGGTGACCGCTTG
GTGTCTTTAACGCAGTAAGCTCGAAGCGTATTATTTGCCTAAGTGTTCAA
CGAGGCCATTCTCGTGTTTGGGTCGTTGATGGTTTGTCGTGTTGAAGTCC
CTTGTACGTGTGTGCAGCAGTTTTTGAAGGTGGGGCAAGGTTGAAGGTTG
GTTTCATGCAAGCGCACCCCCAGGACACATAGCAGCGCCCCTCGAAGGTG
TCGCAAGAGGCCGCAGCAACACACCGATAACCATGCTGTGCTTTGTGCCA
TCTCCCCCTGGGTGCTCGTCGCGTGCGATTCATCGCCACCTGGTGATAGG
TTTGAGCGCTTTCCTATTTTCGTGTGGCTGATTTTTTTCGCCAACGGTCT
AAGTAGGCTGCTTCGATACCGAGTCTGCCAAGAACATACGCACCACCAGT
AGGCATCGATCTCCGTATGTATGTATACCGCGTGAGGGTGGCCCCTCGAA
AACGATACCCGCTCGCCGCTAGCACGATTCGAGTGCATGCGGGGGGCTCC
ACGGGAGGCTGGGGTTTGTTCTTTCAGCGATGCGTCCGTCTCTCTCTAGA
CTCGAAAGCACCCCCCCCGCTCACAAAATGAAATATAGACTCATGCAGCA
CCCGAACACTGCCATAGTAGGCATGGTAGATACAAAAGAGAAGCCGGTTT
GACAGCAATCCACAATCTATGTACATATTATAGTTTATTTAGTGGTCTAG
TGAGCGGCCCGGCTTTGGTGCTTTGCTGGCGTAGGTCCCCGTCGAACAAT
CTTCGAGAGTGGGTAGCAAATCTGGGCTTTGCTCAAAATCCTACCCCTCC
ATGGTTACCGTCAGCATCAGCATCAGTGGCGTGTTGAGATATGATAACTG
CTTGTACCGACAGCAGTACCAACAGCAGTCTTAATGCTTTACTTGGTCCC
CCGCGCATTCGGCGGGCCGAGTTTCCCACATATCTAAAGCGTGAAACATA
GTCTCTGATTGGAGAGGGAGCGTTTAGGGTCGAGGAATATCTCACGGAGA
GCTATGATGCCTCCATCACAAATCACGATTCCCAAAGGCCTTTCGATGCC
GATGTCATGTAAGACGTAGATGTCCGTATCGATACCGAGGTTGGAGAAGC
GGCCCCGGGCGTTGATGTCTTGAGTCTCCCGACCTATGCTTTACTCCTCG
CCCACCGCACTTCCAGAGCAAGCCGGGCAACTTTTTTTTCAGGCAGCAAG
CCAACACGCGCTCACGTACATACCTACAGGTGTCGGCATGGTACACAGGA
TACTCGTATCTATCGGTGTTGTCGTGTCTTGGCGTGGAATTTTGTGACGT
CTCACCCGTGGGCTGGGAACAGTATCCCACCACTGCTGCTGTTCGCAAAC
CCCGCATTCGGCATTCGGAGGATAATTTACCGGTATTAACCTCAACCTTC
ATGGAGGTTTCTGGGTGCGTGTGTGAATGTATGTGAAGCATGTGAATGTA
TGTGAACGTGTGTGAACGTGTGTGAATGTATGTGAATGTATGTTAATTTT
AATGTTGGTCGGTTTTGGTTTTTGCATTCTCTCGCTTTCGTTCCTATCAT
TGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCATCCCGTCTC
TCTTCACCAGCACCCCCCTTTGTCCGAACTGATCCAACAGACACGGCCAA
TTCCCGTGGTCACAGGTTAACTTACCCTAAAAAAGGTAATTATAAAATAA
AATGGACCCGAAGGGTCAGCAGACCGATAAAATCAAGACAAAATCGAAAC
AACTAGTCTGGAGCCCTCCGCTCCCCTCTGCACGCTATGCGAGGTAAAAA
ATAAAATATAATGCAAGTGGAGATATCAAAATTCCCTACCCCGGGGGTGC
ATATCCCCAGGTCCTATCTTGAGTACCCCTACACTGCCACGGTATTCCGT
GCCGGGTTCTCGCCGGCCAGGCAGTGGAAAGCGCTTAGTTCGTCTGTACA
CTTGAGGGAGAGACGGCTGAAACTCTCTCGCGTTAAAAATTACCAGGCAA
GCACCGCAGAAGGTGGGTGGGGGCCTCAGGGAGAGGAGCCTTCTGTGTGA
CCACGGTTCAGATGGTCTGGCAAGCAAGATGCCCCGCGTGGCAAGGCGGC
CCTGCGAACTCTGGAAATAAAGAAGACGAATACATACAACAATAAAAAAT
TGCGCCTTGACTCTGGTACTGGTTGGTTACAGCACAATACTACTCCGTAC
AATATAATAATACTGCTAACACGCCCTCCACGAAAGGACATCCCGACATG
GCCATCCATGCCCATGTCTTGCTTCTCCCGGCTCATCATCGCATGCACAT
CATGCACACTACCTTGAACGATGGTCTCGCGCCGCCCTCTCTTGCCGACG
CTGATGTTTACGTTGGTTTATGCTGTGTGGGTCACTGCTGTTTGATTGAT
GCATTGTTGCATTGTTTTTTTGCTCAGGTATACAACAAGATCGCACGGCA
AGCGATGGGCGATATCAAGGAGTTGCAGTCTAGGGTGGACGCTGGCGAGG
CGTGCCCCGCACTGGGAGAGAAGGCGGACAGCATCTGCAACCAGGTTTGT
GTGTTGTGTTTGATGTCGCAGAGCTGCTGCGAACAGTATTGTTGTTTTTG
TTTTTGTTGTTGTTGATGTTACTGTTTCGCTCCCGCCCTGTTTTTCGTTT
GCCTCGTGGGAAAGCATAGAGTGCTGAGGTTGCACTACTGCTGTTCCGCC
TTCATCGCGACGGCACTACACGCTCTTCTTCTCTCGTGTCATGGTGTCAT
GGTGATGTCTTGCTTTGTCTCGGTCACACACTTCGGCCTCAACCATCGTG
TACACAATCGCACGGGCTTTCGAAGGTCGAGCTAATCTACAATATCCAGT
CGACGCCCATGTGACGGCGAACCATTTCGTTTTCCTGTACCGCCTTTGTG
TAGGTTACCCGGCATTGTTGGTGTACTTAAAACATGATACTGACGATGCG
TGTGCGTGAAATGTGCGCATATGCACCTGTTGTTGAAGTGGCGTTGGTTG
TCCCAGGCACTCGAGCAACTGGTCGCTTGCCTTCCTTCCTGCCTGCCTGC
CTGCCTGCTTGCTTACCTGCTTGCCTACTGTCGACGAACGTGGTTTTTTG
TGTTTCGCTTCCTCGGCTTCCACCAAACACATCAAATCATGAAACCAAAT
ACAATCAAACCGAATCAAAATCAACAGGCGTTGGAGCAATTCAGCACGGA
TGCGGCGGACACGGAGAACGACCCTTCCAAGGAGTCAATCTTTGACGAGA
AGGTAACTGTTTTGGGCGTGTTTCGTATTAGTGTGTGTGTGTGTGTGTGC
ATGCAGTCGAGTCCGCTTCAGCTCCAGCTCGTGTTATTGTTGCTTTGGTG
GTCGCCTTTTACCCTCTGCCTGCAGGAATGTACCGTGAATCATATGGTTG
TTTCGCTTGGCTAGCTTACACCCCCAAGGCAGCCCCCCCGGTGCTAGCAG
CAGCATGTTTGCTGCTCGGAGTGGTGCCATGTACCATCAGCGTTTGTATC
CCCTCCCGAACATGTTGCAGTGTACCCGCGCGGTGTGCTGTGCTTGTTTT
GTACCAGGTGCGTTTTTTGTCTAGGCACCAGGCGTGATTAGACACAACGC
CACCGGAGTGAAACACTCCAACCACATGCAACCTTCCTGTCCTGATCTTG
AGCAAGACGGGGTGACCTGACAAGTAGGTCCTTGATATTGCACATCTTCC
TCACCCCGGTCCAACCTTTTGCGTCCAGAATTACGTTGCTGTTGCCCTAC
GTGCTCTTGGACAGCAGTGCCGCCAATCGTGCCGTACTTCTGTCGTAACA
GCAGCAGGCCGTTTTGGCCTTGATGTGCTGAATCCCTACAGTATTCCCTA
TTTCCTATGAAAGGTTGAGGAACTGGAGACGGCGTTGGACCTGCCTCTGC
AGCTAGTGTACATGAAGCAGCTCACGCTGCTCCGAGAGAAGGCTCTGCAG
AAGTACAAGACGCTCGCCAAGGGAAGCGAGACCAGCGACTATCAGGTATG
TACGTACACACCATTCTCATCGTATGTTACCCGTTTGTGTTTGTACGGGA
TAATTTAATTCTCCAGGGCAGAGCAAAACTAGTGGTGCATGTCTCTCTGG
TTATTGGTATGCACGGCGTTCTATTTAGCGAGCGTCTTTTACTATTTAGG
TAAACCATAGCCCCGGTGGTCATATTATAGTGGTTTCACCGTAGCCATCT
AGCATGCAGGTTCACGGGTTCAAATCCCGGCGCAAGCGACTTTTTCTCAC
ACAAAGTGAGTTTTTTCTCTCGCTTTCGTTCCTGTCAGTGGAAAGCGCTC
AGTTCGTGTGTACACTTGAGGGAGAGACGGCTGAAACTCTCTCGCGTTAA
AAATTACCAGGCAAGCACCGCAGAAGGTGGGTGGGGGCCTCAGGGAGAGG
AGCCTTCCGTGTGACCACGGTTCAGATGTTCTGATGCCCCGCGTGGCAAG
GCGCCCCTGCGAACTCTGAAACTAGAAAATAGTCTATAAATGTGACGACG
AAAATAAAATAAAAAAGTAATCCCAACTTTTTTGTGTCACGTGTCCTGCT
CCTCATGCTTGTCAGTAAATTTCATGTGCGCACCGCTGCTGTCAAGCTAT
GTATCTCATGTATCGCGATTTTCTCTCCTCGCTGGCGTCTGGTTACGTCG
TCTAGCTGGGCATTCTTGCTGGGCATTTTTGCTGGCACTTTGTGGTGGCC
TTGCCGCAGCAAGTTTGTTTTTTCCTGTGTATGTATGCTCATCCCGACAT
CTCTCTCTCTCTCTTTCCCCTCTTTCTACTTCGGCTTTCTTTTTGTTGCC
AGGCGATGGTAGCGGCAGACCAGTGGTTCATGAAGGAGGCAGAGGCTAGT
ACTCGCGCTGGTTCTTCGTGGGAGTTTGCTGCGGTCAGGAACAGCCTTCA
GGTGCCCTAGCCAACGAGGCGATGTTGTACGGCGGTTGGGTTATTTCTTT
TCCTGTCAAGAAGCGCCATGGGGGTACCTTTTTGTCCGGTGTATCTATTC
GGCGTCCGTGTTGGAGTGTTAGAGTGTCTTGTGATCTTGTCCCGCGCATG
GACGGTGAACGTGCAGAAGGGAACAAAAAAAGGCGCCTAGGGTGCAACCT
CTTGGCAACATGTTTGTCCGACGGCTGAACGGTGGTATGATTTCGGCGGC
TTTTGACAGTTTCCTAACAATTCAAGTGCCTCCCACAGTCTAAAAATTTG
CATCTGCTTTTTGTCTTGTCTTTTGGTGGTGACTTCAGACGGCGATGAAC
GAGATGGCGCAGAGGGGCAAGAAGGCCACCGACGCCGCGGTACGAGCGGG
ACAGCAGACCAGCACGGCGATGCAGTACTTGCAAATGCAGCAGCAGCAGC
TTTCGGTGAGCAACGTCCACAGACGCATCTAATTTCGGTCTCTCGTTCTA
TTGTAAGGTTGCGCATTAGCTCGTCTTGGACTTGATCAACCTAGCCCACC
CCTGCTTGGCAGAGCAGAGCAGAGCAGCTGCAGACACTTTTGTTGCCTCG
TTCGCCTTGGGCATTGAGCCGAGCCGAGTTGATCTCATACCCTTTTTCAA
ACTGAAATTGTTCCGGTGGGTTGCTCCGACTCGTGAGAATACCCTCCGAA
TGCGGGACGAGCTCAAGCTCGCTTTTCTCACGCTGTTTTTTTTTTTTTTG
CGGGTGTCCTAACCTTTGTTGCGAGCAGGCGCTGCAGAACCAGCTATACG
GGGGGCAGCCGTCGCCGTGGAATTTCGGTGCAGCCTACCGCATCCCTGAC
ACCAACGTCAATCTGTCGGGTACCTACCAGCAGGGCAAAGCGAACCTCCA
GGCAAGGACATGGATCGGACAGACGACTTTGGTTTTTTCAAGCGGAGACG
TGAACAGGGTTAGCTTTCAGTGAGACGGCTTTATGTGATGTCCGTGCCAG
TGGGTGGTTATCATGTGGATGGCCACATCTCCGTGTCTAGTCTAGGTGTC
GAATATGTTTCATTGAATCCAACCTGATTCCACTGCTGACTTCGTATTCT
CCTTCACTTTTGGCATCATCTAAATCTTTGCAGTGCTCGCACGATTTTTT
GTGTGTTATCGTTGGTAAAAGTTTGGGGTTCGCTTACCTTGGCCATCGTC
CGTGCGTTTCATCTCGCCTCTCTTATCTTTGTCTACCCTTTCCTCCTCTT
TTTTCCCTTTTTATTTGTTTTTGGAGCAGATGACGTGCGTTCCGGACGAA
TATAGCTCGATGTTGGGGTCGCAGGGCTTCACGCACGGGGTGGGCCCAGG
CAACCTTGGCCTTTCAGTCAACCTCAGCATTTAA

Coding sequence (CDS) from alignment at C-linearis_contig9:119726..126409-

>mRNA_C-linearis_contig9.16456.1 ID=mRNA_C-linearis_contig9.16456.1|Name=mRNA_C-linearis_contig9.16456.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at C-linearis_contig9:119726..126409- (Chordaria linearis ClinC8C monoicous)
CTCCTATCCCACAGGACAAGCGTGACCACGGCAGACACACAGCAGTGTTC
GAACAGTAAGAGAAGCCATTCGTCGAGACCGCAGTTGCGTCCGAGTTGTG
ATTCACAGAACGCAATCATGAGGGCAGCTTGCTTGTTGATGGTGGGGCTG
GGAGGAGCAGCGGCAGCAGCTTCGGACTCGGTTAGCGCCTACCACATGAG
CTGCCACGGGCTCCTATCCCACAGGACAAGCGTGACCACGGCAGACACAC
AGCAGTGTTCGAACAGTAAGAGAAGCCATTCGTCGAGACCGCAGTTGCGT
CCGAGTTGTGATTCACAGAACGCAATCATGAGGGCAGCTTGCTTGTTGAT
GGTGGGGCTGGGAGGAGCAGCGGCAGCAGCTTCGGACTCGGTTAGCGCCT
ACCACATGAGCTGCCACGGGGTATACAACAAGATCGCACGGCAAGCGATG
GGCGATATCAAGGAGTTGCAGTCTAGGGTGGACGCTGGCGAGGCGTGCCC
CGCACTGGGAGAGAAGGCGGACAGCATCTGCAACCAGGTATACAACAAGA
TCGCACGGCAAGCGATGGGCGATATCAAGGAGTTGCAGTCTAGGGTGGAC
GCTGGCGAGGCGTGCCCCGCACTGGGAGAGAAGGCGGACAGCATCTGCAA
CCAGGCGTTGGAGCAATTCAGCACGGATGCGGCGGACACGGAGAACGACC
CTTCCAAGGAGTCAATCTTTGACGAGAAGGCGTTGGAGCAATTCAGCACG
GATGCGGCGGACACGGAGAACGACCCTTCCAAGGAGTCAATCTTTGACGA
GAAGGTTGAGGAACTGGAGACGGCGTTGGACCTGCCTCTGCAGCTAGTGT
ACATGAAGCAGCTCACGCTGCTCCGAGAGAAGGCTCTGCAGAAGTACAAG
ACGCTCGCCAAGGGAAGCGAGACCAGCGACTATCAGGTTGAGGAACTGGA
GACGGCGTTGGACCTGCCTCTGCAGCTAGTGTACATGAAGCAGCTCACGC
TGCTCCGAGAGAAGGCTCTGCAGAAGTACAAGACGCTCGCCAAGGGAAGC
GAGACCAGCGACTATCAGGCGATGGTAGCGGCAGACCAGTGGTTCATGAA
GGAGGCAGAGGCTAGTACTCGCGCTGGTTCTTCGTGGGAGTTTGCTGCGG
TCAGGAACAGCCTTCAGGCGATGGTAGCGGCAGACCAGTGGTTCATGAAG
GAGGCAGAGGCTAGTACTCGCGCTGGTTCTTCGTGGGAGTTTGCTGCGGT
CAGGAACAGCCTTCAGACGGCGATGAACGAGATGGCGCAGAGGGGCAAGA
AGGCCACCGACGCCGCGGTACGAGCGGGACAGCAGACCAGCACGGCGATG
CAGTACTTGCAAATGCAGCAGCAGCAGCTTTCGACGGCGATGAACGAGAT
GGCGCAGAGGGGCAAGAAGGCCACCGACGCCGCGGTACGAGCGGGACAGC
AGACCAGCACGGCGATGCAGTACTTGCAAATGCAGCAGCAGCAGCTTTCG
GCGCTGCAGAACCAGCTATACGGGGGGCAGCCGTCGCCGTGGAATTTCGG
TGCAGCCTACCGCATCCCTGACACCAACGTCAATCTGTCGGGTACCTACC
AGCAGGGCAAAGCGAACCTCCAGGCAAGGACATGGATCGGACAGACGACT
TTGGCGCTGCAGAACCAGCTATACGGGGGGCAGCCGTCGCCGTGGAATTT
CGGTGCAGCCTACCGCATCCCTGACACCAACGTCAATCTGTCGGGTACCT
ACCAGCAGGGCAAAGCGAACCTCCAGGCAAGGACATGGATCGGACAGACG
ACTTTGCAGATGACGTGCGTTCCGGACGAATATAGCTCGATGTTGGGGTC
GCAGGGCTTCACGCACGGGGTGGGCCCAGGCAACCTTGGCCTTTCAGTCA
ACCTCAGCATTTAACAGATGACGTGCGTTCCGGACGAATATAGCTCGATG
TTGGGGTCGCAGGGCTTCACGCACGGGGTGGGCCCAGGCAACCTTGGCCT
TTCAGTCAACCTCAGCATTTAA