mRNA_C-linearis_contig9.16452.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 418 bits (1074), Expect = 1.710e-135 Identity = 221/335 (65.97%), Postives = 257/335 (76.72%), Query Frame = 3
Query: 489 GMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAE----------------------LVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1424
GMRLA+ ADFSLLLV+RLEELR HP+KYFP+LLA+AE TL E E L HFM NF +SG F EMI RW KWMDMHQHLPYSMARLACSSF+E KW GSE+A EHAVGQE+ARA LL LWPEL E AEW W+EEH +LE+L DL EA TT+ KD+LT GMFSKL+ASA FR E+E+Y+ SA EK+ +V+D E+Q RVSGF+MIW+FP LYEWA HAI FAPIHQQLV+SV STYDTCTQKHDSREI IVRLGQFRS QSRRV+R +ATN E+R+AGD+ I VAR LKK+A+ A+PN+ QLRKR D++ F
Sbjct: 413 GMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSANAAQTLLLFDPVPYCPMLQLAHFMRNFQNEKSGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQF 747
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 371 bits (953), Expect = 3.040e-124 Identity = 186/251 (74.10%), Postives = 212/251 (84.46%), Query Frame = 3
Query: 675 MIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1424
MI RW WMDMHQHLPYSMARLACSSF+E KW GSE+AFEHAVGQE+ARA LL LWPELYE AEW W+EEH +LE+L DL EA TT+ KD+LT GMFSKL+ASA FR E+E+YA SA EK+ +V+D ENQ RVSGF+MIW+FP LYEWACHAI FAPIHQQLVES FST+DTCTQKHDSREIDIVRLGQFRS SRRV+R ATN E+R+AGD+AI VAR LKK+A+HA+PNERQLRKR HD++ F
Sbjct: 1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQF 251
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 320 bits (820), Expect = 9.880e-102 Identity = 185/314 (58.92%), Postives = 204/314 (64.97%), Query Frame = 3
Query: 486 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1424
PGMRLAEAADFSLLLVKRLE + SM RLACSSFYE KW GSEE FEHAVGQE ARALLL WP YE EW+ WEE++TF E +KLTLGMFSKL+ASA FREELE+YA+SAHEK+ VV DV ENQT RVSGF+MIW FPQLYEWACHA++FAPIHQQLVES STYDT TQKHDSRE+DIVRLGQF SR SRRVER +++N E+R GD+AI VA LKK+ASHAVPNERQLR EHD R F
Sbjct: 139 PGMRLAEAADFSLLLVKRLERSQRM-------------------------------------------------------SMTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE---------------NKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSDVDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKF 382
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 284 bits (727), Expect = 8.140e-90 Identity = 151/245 (61.63%), Postives = 184/245 (75.10%), Query Frame = 3
Query: 699 MDMHQHLP-YSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVI--DVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKREHDSRNF 1424
MD H P +++ YE KW G+++A EHAVG+EFARALL+ LWPE E AEWR W+EEH L +LEGDL EATT KDKLT GM+++L+ SA FR+E+E YA+SAHEK+ V+ D+ +N RVS F MIWNFP LYEWA HAI+ A IH+QLV SVFS YDTCTQ+HDSREIDIVRLGQFRS QSRR+ + +A+N E+R+AG++AI ARAL+K AS AVPNERQ RKR HD F
Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQF 245
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.020e-63 Identity = 134/306 (43.79%), Postives = 180/306 (58.82%), Query Frame = 3
Query: 486 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1403
PGMRL E ADFS LL+ +LE +R P+ YF +L +TTL EA FM NF + GFF E +RW+KWM+ HQ LP SMAR+ C SF+ + E A E AVG EFARA L V W LYE E R+ E E + L DL T + KD+LT G+FS++ + R ELE+YA+S + V + S +++FP LY+ CH YF PIHQQL+E+ FS +D+C QK D E+DIVR+G ++S +SR + ++AT ++R AG + +E AR K + P E RKR
Sbjct: 164 PGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSE-DKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYE-GEPRT-EREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGWGDKEV----DQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE) HSP 1 Score: 183 bits (464), Expect = 2.750e-52 Identity = 88/163 (53.99%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRF*NLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 483
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS SS +++R+ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRL 162
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE) HSP 1 Score: 184 bits (466), Expect = 8.860e-52 Identity = 89/166 (53.61%), Postives = 111/166 (66.87%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRF*NLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 492
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS SS ++R+ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL G
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 165
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 184 bits (468), Expect = 2.280e-49 Identity = 88/163 (53.99%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 1 MECQFFMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRF*NLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 483
M FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+ S S++R+ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL
Sbjct: 1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRL 162
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.060e-44 Identity = 104/240 (43.33%), Postives = 133/240 (55.42%), Query Frame = 3
Query: 486 PGMRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTC 1205
PGMRL E ADFS LL+++LE +R P+ YF LL TL + + FM+ F + FF E +RW+KWM HQ LP SMAR+ C SFY + A E AVG EFARA L V WP LYE E R+ E E + L DL T + KD+LT G+FS + R ELE+YA+S + + E+ S + +FP LY+ CH YF PIHQQL+E+ FS C
Sbjct: 90 PGMRLVEVADFSRLLLQKLETIRKDPKTYFAALLDRVRATLSDPMVKFFMLAFSE-DRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFLHVAWPGLYE-GEPRT-EREREYRTQLVKDLGGTTEARRKDELTFGLFSCIDGDLSVRSELEQYANSGWGNKEI----DESAPKSTSELARLLDFPLLYQLVCHRFYFVPIHQQLIEAFFSKNIVC 322
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.790e-39 Identity = 100/223 (44.84%), Postives = 126/223 (56.50%), Query Frame = 3
Query: 594 AETTLKEAELVHFMMNFGTGESGFFWEMIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVIDVLGENQTARVSGFEMIWNFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRS 1262
AET AE HFM+NF +S FF E RW KWM HQ LP SMAR+ C SFY + + A E AVG E+ARA L V WPE YE E RS E E + L D + KD+LT G+FS + A R E+E YA S + V + + TA V FE FP+LY++ C YF PIHQQL+E+ FS YDTC +K D +D VR+G +++
Sbjct: 151 AETRWMVAEKKHFMVNFSE-DSFFFAEFNMRWKKWMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYE-GEPRS-EREREYRVQLGEDFGGVIDARRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEVDEEAEKGTTALVRLFE---KFPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16452.1 >prot_C-linearis_contig9.16452.1 ID=prot_C-linearis_contig9.16452.1|Name=mRNA_C-linearis_contig9.16452.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=312bp MRLAEAADFSLLLVKRLEELRAHPRKYFPELLAFAETTLKEAELVHFMMNback to top mRNA from alignment at C-linearis_contig9:43167..44916- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16452.1 ID=mRNA_C-linearis_contig9.16452.1|Name=mRNA_C-linearis_contig9.16452.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1750bp|location=Sequence derived from alignment at C-linearis_contig9:43167..44916- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:43167..44916- >mRNA_C-linearis_contig9.16452.1 ID=mRNA_C-linearis_contig9.16452.1|Name=mRNA_C-linearis_contig9.16452.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at C-linearis_contig9:43167..44916- (Chordaria linearis ClinC8C monoicous)back to top |