mRNA_C-linearis_contig89.16441.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig89.16441.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE) HSP 1 Score: 1116 bits (2887), Expect = 0.000e+0 Identity = 772/1494 (51.67%), Postives = 913/1494 (61.11%), Query Frame = 2
Query: 1316 DGSAQPPPLLRSFDDDWEAFRTRGEYSTEQSELETAPVETDLTSSVALPVSVNSAVLGRVGGCEVVLARRVGPGEVVKQLHLLPVSQRDDAPNSGGKPGTAPGEPHLSPNRPCRFVLLTTKAATTCFICARPSNSNSATPALSPFPAMGRPPSPGFSERRSPTPPSPSPLSAPSPAGQRTSQLGGQSRPIDSGGRLGSGLSGGSTGSAAGDHXXXXXXXXERLDVFLRRYCRFNHDLLLASITSTFLFALTVEGVEVWTFPSDDKLSEKLSEAGGRAGKWKWSEEREGSFGGLRAPLSLSSLSPHPSPRPCLLHVQELEINGVVPRTPGSCMVPLGGAAPGLLLFPSPPANQCASLAFLAQQCRRRLRSRAAADDPEELGDTPAFRKPPPPQNPFSL--GGSNTSAKPEQNGWQRKFAAWRDGFCGTGRGGATEAASASPLALILRLRTSTEAFRLLSAAAERSPRPLSARVSSVFVSAAEGLHGALTAEAAEAWRAAVFPDSGDAGAXXXXXXXDTAVRRAEIEPLLAGLASCWRLQRVAARCASLLGRLLLETAVTVGERWSDENSAAAGLAYTRACSWMLASGGPAVESFGLLRDAAGRVLAVGVKEMERTLSAEPSFVLVDDDEDDYPDEDHPYIATPGVPPPNLEKLLPRAMYESYLLPALGLGDTPETQSRCPPPPSVS--------ARDREASTLSLGDALSGLVAYLHRHDMRQLSQRQGLQDLGEGMRRPTLPLSAAVVYANRIPWAACPAALSEALVALDQQDKALAESTSGNISSSSGSSGTSLSGRKSPTGVAGVAKRSKPASKARRGSEHRRGSSASGPSPDNRAPTAESSSFLLPAQEWIAVARALLLGYSEQAEKSGATGAVSPGPA---GVLAADARILQLACERHPSLVVAHVAPARPGAGPLARDLLAGGRAQLVVAALVNLTSHARDGRPGKP*SGNASFGPHRARELAQLKDDCFSSSVDPLHALHVFGIAGRQIAARLDSLRRASLDLPGDFGFPSEARR--FDASPHEQSSDPSAIAVGSGQQDRADSRDANALSAAAREFLSRRCSASLATAGPSARHQERLSQTLGAPAAWQASFARNRALDRAILRFLIGAHLDDLRALENATAGGGNPKATRGAPSGWGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSWADAIVPLLSGQVSASRARGGPAEEHVEAILCIIREISWRAGRADSSSSGGGSGRSMSHEEAEEVVTEAKRRLPVSELAPASAPALASASATAGNLTDEDETGQADDDTHPWGSGGDGMGARRAPWPWGPRAVPASAVGAVLALAAALPPAGKLLAGLDVMLQVGAEVVAAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDGGEAHASVEEVCRAAERAVLLYTSEYCGKDPEKWASVTEHARNTGDVQRAPALDGSVGVDAAGHSLVRALLRRCGEELGGKALVRALPASLTLVECLDEVERNLLND 5752
D SAQPPPLLRSFDDDWEA RTR EY E E E AP+ T+ S + PVS NS VL R+G C+VVLARRVGPGEVVK+LHL P+ + +S G G+S G A ++L VFLR+ RFN+D+L+ASITS FLF LTVEGVEVWT+PS E L G+ KW +G FG + PLS + HP PRPCLLHVQ+LE++GV+PR+P MVPL GA PGLLLFP P A + +LAFL QC+RRLRS AAD+P G + AF KPP P P S GG+N Q+ W RK AAWR+GFCG G ATE + SPLAL LRLR+ T A RLLS A E S RP A+VS +F+SAAEGLH ALT E + AWRA V +G A + + IE +L GL +CWRLQRVAARCASLLG+LLLETA++ E+ S E A GLAYTRACSW+LASG P VESF L+D A RV G E E T + PSFV +DDDE E + Y+ T VPP +LE+LLPRAMYE YLLP+ G+ DTP PP ++ + E +LSL D LSGLV+YLHR D+++LS R GL + +G R T PLS AVVYA+R PW CP ALS+AL+ALD+QDK L ESTS NI S+SGSSG SLS + S G+ + +++P + + H++ +S S D+R PT + + L P QEWIAVARA+L GY EQ G TG P LAAD++ILQLACERHP+LV AP R GAGPLARDLLA GR + VVAALV LTS G G+ G SFGP +A EL QLKDDCFS +DPL AL+VFG GRQIA RLDS RRASLDL G F AR F +EQ+S+ AV S R + + +LSAAAR+FLSRRCSASLATA S RHQER+SQ LGAP AW+AS AR RALDRA+LR+LI AHLDDLR+LEN+ AG NPK G P+ S+WADAIVPLLSGQVS +ARG AEEHV+AIL ++REI+ R GR+ ++S G+ SM+HE AEEVVTEAKRRLP +EL+PAS G D D G +DDT PWGSGG+G G RAPWPWGPRAVPASAVGA+LALAAALPPAGKLLAGLDVMLQVG EVVAAAK+E+AXXXXXXXXXXXX D G A ASVEEV AAERA+LLY EYCGKDP++WASVTEH RN+ RA + VDA G LVRALL+RCG ELGG+ALVRALP +L L++CLDE+ER+LL D
Sbjct: 74 DSSAQPPPLLRSFDDDWEAIRTRREYVPEPLEPEGAPLATE-PYSTSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPIHESSSTADSHAVDG---------------------------------------------------------------------------------------------------GISAGVVAEYA-----------QQLVVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPS-----ENLPVTDGQERKW----SEDGRFGDMGVPLSSPA---HPPPRPCLLHVQKLEVDGVLPRSPVQIMVPLAGATPGLLLFPPPLAAKGDTLAFLTHQCQRRLRSPGAADEPIANGIS-AFCKPPSPTTPLSAWPGGNNNLG---QDCWSRKLAAWRNGFCGLGGNKATEY-TPSPLALFLRLRSPTAAVRLLSVAEECSERPHPAKVSDMFLSAAEGLHNALTFEVSAAWRAGVGL-AGTASTLAGHGSSSSVAEQVRIETILPGLVNCWRLQRVAARCASLLGQLLLETALSAAEQGSAEGDCATGLAYTRACSWLLASGEPVVESFASLQDVAARVSVAG-DETELT-AVVPSFVSLDDDE-----EGNSYLTTAEVPPLDLEELLPRAMYELYLLPSFGVRDTPGVG-----PPRLALDSSAIPISESGEPQSLSLDDVLSGLVSYLHREDIQRLSLRPGLPSVWDGTPRYT-PLSTAVVYASRAPWTECPVALSQALLALDEQDKTLNESTSSNIRSNSGSSGASLSRKTSRGGLKRLKSKTRPRHERSGSTGHQKPAS----SLDDRDPT-DDETTLSPTQEWIAVARAILSGYLEQ---MGGTGGQPEAPRQGRSALAADSQILQLACERHPTLV----APLRGGAGPLARDLLAAGRVKPVVAALVTLTSCGDGG--GRAGCGEGSFGPQKAPELLQLKDDCFSPKIDPLQALYVFGAPGRQIAERLDSFRRASLDLSGPFCSTIGARPGLFHDDAYEQNSE----AVDS----RPNPSETKSLSAAARDFLSRRCSASLATAALSVRHQERISQALGAPEAWRASLARTRALDRAVLRYLISAHLDDLRSLENSAAG--NPKTPDGKPT---------ADTGRSSGSVKTGSDTRTNNHRDREYSTWADAIVPLLSGQVS--KARG--AEEHVDAILRLVREIT-RRGRSANNSLSDGNRCSMNHEVAEEVVTEAKRRLPATELSPAST----------GASVDYDGNGHINDDTQPWGSGGEGTGKGRAPWPWGPRAVPASAVGAILALAAALPPAGKLLAGLDVMLQVGEEVVAAAKAESAXXXXXXXXXXXXKGSARAGDVIRKDSGL--DAGVAVASVEEVSCAAERALLLYAGEYCGKDPDRWASVTEHVRNS----RASQVREGGSVDAPGQDLVRALLQRCGAELGGQALVRALPENLDLMDCLDEIERSLLGD 1371
BLAST of mRNA_C-linearis_contig89.16441.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI) HSP 1 Score: 529 bits (1362), Expect = 2.160e-162 Identity = 474/1236 (38.35%), Postives = 555/1236 (44.90%), Query Frame = 2
Query: 890 GEVSPRCSSTPTTGSNAPATPSSRGDAESPKAASPQSHPPRSSPRDKSTTSSRGSAAALKSDSKDFPPKSASRGGSSXXXXXXXXXXXXXXXXXXRSP---GVRKDGGKSKPERRDGIAERAISEADDVIVCVLDPGGEEDGREADGSAQPPPLLRSFDDDWEAFRTRGEYSTEQSELETAPVETDLTSSVALPVSVNSAVLGRVGGCEVVLARRVGPGEVVKQLHLLPVSQRDDAPNSGGKPGTAPGEPHLSPNRPC-RFVLLTTKAATTCFICARPSNSNSATPALSPFPAMGRPPSPGFSERRSPTPPSPSPLSAPS------------PAGQRTSQLGGQSRPIDSGGRLGSGLSGGSTGSAAGDHXXXXXXXXERLDVFLRRYCRFNHDLLLASITSTFLFALTVEGVEVWTFPSDDKLSEKLSEAGGRAGKWKWSEEREGSFGGLRAPLSLSSLSPHPSPRPCLLHVQELEINGVVPRTPGSCMVPLGGAAPGLLLFPSPPANQCASLAFLAQQCRRRLRSRAAADDPEELGDTPAFRKPPPPQNPFSL--GGSNTSAKPEQNGWQRKFAAWRDGFCGTGRGGATEAASASPLALILRLRTSTEAFRLLSAAAERSPRPLSARVSSVFVSAAEGLHGALTAEAAEAWRAAVFPDSGDAGAXXXXXXXDTAVRRAEIEPLLAGLASCWRLQRVAARCASLLGRLLLETAVTVGERWSDENSAAAGLAYTRACSWMLASGGPAVESFGLLRDAAGRVLAVGVKEMERTLSAEPSFVLVDDDEDDYPDEDHPYIATPGVPPPNLEKLLPRAMYESYLLPALGLGDTPETQSRCPPPPSVSARDREASTLSLGDALSGLVAYLHRHDMRQLSQRQGLQDLGEGMRRPTLPLSAAVVYANRIPWAACPAALSEALVALDQQDKALAESTSGNISSSSGSSGTSLSGRKSPTGVAGVAKRSKPASKARRGSEHRRGSSASGPSPDNRAPTAESSSFLLPAQEWIAVARALLLGYSEQAEKSGATGAVSPGPAGVLAADARILQLACERHPSLVVAHVAPARPGAGPLARDLLAGGRAQLVVAALVNLTSHARDGRPGKP*SGNASFGPHRARELAQLKDDCFSSSVDPLHALHVFGIAGRQIAARLDSLRRASLDLPGDFGFPSEARR--FDASPHEQSSDPSAIAVGSGQQDRADSRDANALSAAAREFLSRRCSASLATAGPSARHQERLSQTL 4537
GE R S+TP +G NAPA + RGDA+SPKA SPQ+HPPRSSPRDKSTT RG + K + KDFPPK A+RGG S RSP G RK+GGKSK E RDGI ERAISEA+D++VCVL PGGE+D RE + SA+PPPLLRSFDDDWEA RTR EY E E E+AP+ T+ S +LPVS NS VL R+G C+VVLARRVGPGEVVK+LHLLP+ R D +S + + + P PC RFVLLT+K AT C + A + +A+ A S FPA+GR S R SP+ P S + P G R S S +D G S G A D ++L VFLR+ RFN+D+L+ASITS FLF LTVEGVEVWT+PS++ +++ GR KWSE+ G FG + PLS + H SPRPCLLHVQ+LE++GV+PR+P CMVPLGG PGLLLFP P A KPP P P S GG N Q+ W RKFAAWRDGFCG G ATE + SPLAL LRLR+ TEA RLLS A ERS RP A+ S++F+SAAEGLH ALT E + AWRAAV LAG AS +L G AS A E G G G PE + RQG LAAD++ILQLACERHP+LV AP R GAGPLARDLLA GR + VVAALV LTS G G+ G SFGPH+AREL QLKDDCFS +DPL AL+VFG GRQIA RL S RRASLDL G F EAR F +EQ+S+ AV S R + + ALSAAAR+FLSRRCSASLATA S RHQER+SQ L
Sbjct: 5 GEPRSRYSTTPESGFNAPAASTPRGDAQSPKAPSPQAHPPRSSPRDKSTTRLRGPSG--KPEPKDFPPKLAARGGPSGKSKGLAGVDEGG-----RSPVFSGFRKEGGKSKTEPRDGIVERAISEAEDLVVCVLHPGGEQDDRETESSARPPPLLRSFDDDWEAIRTRREYVPEPLEPESAPLATE-PFSTSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPIHDRVDPWSSEDEGDPSRDKARSHPVDPCCRFVLLTSKGATVCLVRA----ALTASEASSMFPALGR-----SSGRASPSRPRSSSFAXXXXXXXXXXDRKIPPVGSRCSSSTTDSHAVDGGI---------SAGGVAEDS--------QQLVVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENL---PVTDGQGR----KWSED--GRFGDMGVPLSSPA---HASPRPCLLHVQKLEVDGVLPRSPARCMVPLGGETPGLLLFPPPLAT-----------------------------------KPPSPTTPLSAWPGGDNNVG---QDFWPRKFAAWRDGFCGLGGSKATEY-TPSPLALFLRLRSPTEAVRLLSVAEERSERPHPAKASAMFLSAAEGLHNALTFEVSAAWRAAVG---------------------------LAGTAS------------TLAGH---------------------------------ASSSSAAEQMG------------------------------------------------------------------------GTGGQPE------------------------------------------APRQGRS---------------------------------------------------------------------------------------------------------------------------------------------------------ALAADSQILQLACERHPTLV----APLRGGAGPLARDLLAAGRVKPVVAALVTLTSCGDGG--GRAGCGEGSFGPHKARELLQLKDDCFSPKIDPLQALYVFGAPGRQIAQRLGSFRRASLDLSGPFCSTIEARPGLFHDDAYEQNSE----AVDS----RPNPSETKALSAAARDFLSRRCSASLATAVLSVRHQERISQAL 802 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig89.16441.1 >prot_C-linearis_contig89.16441.1 ID=prot_C-linearis_contig89.16441.1|Name=mRNA_C-linearis_contig89.16441.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1370bp MFDTADLIALPGLVPGAGDGVLRRDIARESVPGAEEAVEGGGVLNRNLHVback to top mRNA from alignment at C-linearis_contig89:671494..681641- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig89.16441.1 ID=mRNA_C-linearis_contig89.16441.1|Name=mRNA_C-linearis_contig89.16441.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10148bp|location=Sequence derived from alignment at C-linearis_contig89:671494..681641- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig89:671494..681641- >mRNA_C-linearis_contig89.16441.1 ID=mRNA_C-linearis_contig89.16441.1|Name=mRNA_C-linearis_contig89.16441.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8220bp|location=Sequence derived from alignment at C-linearis_contig89:671494..681641- (Chordaria linearis ClinC8C monoicous)back to top |