mRNA_C-linearis_contig89.16395.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16395.1
Unique NamemRNA_C-linearis_contig89.16395.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:117261..117642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16395.1prot_C-linearis_contig89.16395.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 117272..117571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.8567376-UTR-C-linearis_contig89:117260..1172711622930689.8567376-UTR-C-linearis_contig89:117260..117271Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 117261..117271 +
1690881198.4859915-UTR-C-linearis_contig89:117260..1172711690881198.4859915-UTR-C-linearis_contig89:117260..117271Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 117261..117271 +
1622930689.8906393-UTR-C-linearis_contig89:117571..1176421622930689.8906393-UTR-C-linearis_contig89:117571..117642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 117572..117642 +
1690881198.5112991-UTR-C-linearis_contig89:117571..1176421690881198.5112991-UTR-C-linearis_contig89:117571..117642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 117572..117642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.8735096-CDS-C-linearis_contig89:117271..1175711622930689.8735096-CDS-C-linearis_contig89:117271..117571Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 117272..117571 +
1690881198.4980233-CDS-C-linearis_contig89:117271..1175711690881198.4980233-CDS-C-linearis_contig89:117271..117571Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 117272..117571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16395.1

>prot_C-linearis_contig89.16395.1 ID=prot_C-linearis_contig89.16395.1|Name=mRNA_C-linearis_contig89.16395.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MRDRGQAGVPATTRTRTIVASRYLRKYVSPPPSTTRISFLWCTEASRLEV
VHFLSFLASLLLAQERARRGGAVDENSGVHHDAPCQTYPASSSKTPSVK*
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mRNA from alignment at C-linearis_contig89:117261..117642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16395.1 ID=mRNA_C-linearis_contig89.16395.1|Name=mRNA_C-linearis_contig89.16395.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=382bp|location=Sequence derived from alignment at C-linearis_contig89:117261..117642+ (Chordaria linearis ClinC8C monoicous)
TGTGGTCATGAATGCGAGACAGAGGACAGGCGGGCGTGCCTGCCACCACT
CGCACACGTACAATTGTTGCGTCGCGATATCTACGGAAATACGTCTCCCC
ACCTCCCAGCACGACCAGGATTTCATTCCTGTGGTGTACTGAGGCCTCTC
GGCTCGAAGTTGTTCATTTCCTTAGCTTTCTTGCGAGCTTGCTTCTCGCC
CAGGAGCGTGCACGCCGCGGGGGCGCTGTAGATGAAAATTCAGGGGTACA
CCACGATGCCCCTTGTCAAACTTATCCAGCGTCATCATCCAAAACTCCAT
CCGTCAAGTAAAGGTACGCCCCTTTTTTATTCACTGGGCTTCCACGCGAC
GCCCCCTCCGCCCAAAAGAGGCATATCAACGT
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Coding sequence (CDS) from alignment at C-linearis_contig89:117261..117642+

>mRNA_C-linearis_contig89.16395.1 ID=mRNA_C-linearis_contig89.16395.1|Name=mRNA_C-linearis_contig89.16395.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig89:117261..117642+ (Chordaria linearis ClinC8C monoicous)
ATGCGAGACAGAGGACAGGCGGGCGTGCCTGCCACCACTCGCACACGTAC
AATTGTTGCGTCGCGATATCTACGGAAATACGTCTCCCCACCTCCCAGCA
CGACCAGGATTTCATTCCTGTGGTGTACTGAGGCCTCTCGGCTCGAAGTT
GTTCATTTCCTTAGCTTTCTTGCGAGCTTGCTTCTCGCCCAGGAGCGTGC
ACGCCGCGGGGGCGCTGTAGATGAAAATTCAGGGGTACACCACGATGCCC
CTTGTCAAACTTATCCAGCGTCATCATCCAAAACTCCATCCGTCAAGTAA
ATGCGAGACAGAGGACAGGCGGGCGTGCCTGCCACCACTCGCACACGTAC
AATTGTTGCGTCGCGATATCTACGGAAATACGTCTCCCCACCTCCCAGCA
CGACCAGGATTTCATTCCTGTGGTGTACTGAGGCCTCTCGGCTCGAAGTT
GTTCATTTCCTTAGCTTTCTTGCGAGCTTGCTTCTCGCCCAGGAGCGTGC
ACGCCGCGGGGGCGCTGTAGATGAAAATTCAGGGGTACACCACGATGCCC
CTTGTCAAACTTATCCAGCGTCATCATCCAAAACTCCATCCGTCAAGTAA
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