mRNA_C-linearis_contig89.16392.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16392.1
Unique NamemRNA_C-linearis_contig89.16392.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:43674..48239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size240
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16392.1prot_C-linearis_contig89.16392.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 43698..48152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.3439817-UTR-C-linearis_contig89:43673..436971622930689.3439817-UTR-C-linearis_contig89:43673..43697Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 43674..43697 -
1690881198.2479339-UTR-C-linearis_contig89:43673..436971690881198.2479339-UTR-C-linearis_contig89:43673..43697Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 43674..43697 -
1622930689.4040246-UTR-C-linearis_contig89:48152..482391622930689.4040246-UTR-C-linearis_contig89:48152..48239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 48153..48239 -
1690881198.2888958-UTR-C-linearis_contig89:48152..482391690881198.2888958-UTR-C-linearis_contig89:48152..48239Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 48153..48239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.3626182-CDS-C-linearis_contig89:43697..437851622930689.3626182-CDS-C-linearis_contig89:43697..43785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 43698..43785 -
1690881198.2671087-CDS-C-linearis_contig89:43697..437851690881198.2671087-CDS-C-linearis_contig89:43697..43785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 43698..43785 -
1622930689.3816516-CDS-C-linearis_contig89:48111..481521622930689.3816516-CDS-C-linearis_contig89:48111..48152Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 48112..48152 -
1690881198.2793088-CDS-C-linearis_contig89:48111..481521690881198.2793088-CDS-C-linearis_contig89:48111..48152Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 48112..48152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16392.1

>prot_C-linearis_contig89.16392.1 ID=prot_C-linearis_contig89.16392.1|Name=mRNA_C-linearis_contig89.16392.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=43bp
MVFYVKTTTTTIHDAHSGKAVTECPACLRCRGRSHMGSFRRE*
back to top

mRNA from alignment at C-linearis_contig89:43674..48239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16392.1 ID=mRNA_C-linearis_contig89.16392.1|Name=mRNA_C-linearis_contig89.16392.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4566bp|location=Sequence derived from alignment at C-linearis_contig89:43674..48239- (Chordaria linearis ClinC8C monoicous)
TAGGCTCCTTGCGCTCTGTGACCACGGAAATTGGCCGTGTCTGTTGGATC
AGTACGGACAAAGGGGGTACTGGGTGGAGAGATCGGGATGGTTTTTTATG
TGAAGACAACAACAACAACAATACATGAGCAGAGGAGGAACTGTCACGGG
GTTCCAGATGGGACAAGAAAGGTCGCACATACGTAGTTGCTGAGGAGCGT
GGATCTACCATAACGTCCGCAGATTGCTTTGAAGAGTAGGCGAATTGCCC
GTGGAAAACGACAGCACTAAATCCTAGAATGGTTTCGAACGGTCTGCTTT
TATTGCGGGCGACCTGCATGCCCTTCCTAATATGTACACTGCTGTGGATC
TTCACACATAATGGGACGCTTCTATACCTGCGGGGGCGTTGTTGGCACGG
AGCTGCTCAATCCTGGAGAGCCGGTCCTTCTCCTTCAAAAGGAGCTCGCG
TAGCTGCTCCTCCTTCCTGCGTAGTTGCTCCTTCTCCCTGCGTAGTTGCT
CCTTCTCCCTGCGTAGTTGCTCCTTCTCCTTCAACAAGGCTTCGGGGTCG
GTCATTCCGAGGTACCTGAAGCCCCCAACAATAGCAGCCTCAATACCATC
AATCTTCTTGACAACCTCTGCCGTCTCCTTCTCTACATCCTCGATCTTGC
GCTCTACACCACGGATCTCATCCTGGACCGCACGGATCTCGTCCGCCGCC
GGACTGCCATCGGCAGCTTCCCGCGCATCATGATCGCCGCCCCCCCCCTC
CTCGTCGCCCTCGCTCATCGCGCTCAAGCTCGTCATCCCTCGCACCGGGT
ACACCATGTGCGCCCCACAAGTGCCACACGTCCCGAACACAGGGCAGATC
GCACCAGAGGGCTGCGAGAGCGAAATCTTCGCCGCCGCAGGCGTGGAAGC
AGGGGGCTGCGAGCGTGACGAACTGAACGTCGCAGTCCAGCTCGGAACGA
AGGCCAAGCATGCTTGTGCGATACAAACCAGGAGAAGAACCGACACACAA
TGCCTTGACATGGTAGCGTAGTTGACCCGTAAGGCTAGAGGGGGCGACCG
GCGGCAGGGAGCCAGAGGCGGCGAGGACGCGAGGACGTTGATATGCCTCT
TTTGGGCGGAGGGGGCGTCGCGTGGAAGCTCAGTGAATAAAGGGGCGTAT
ATACACAGCATGTTGTATTGGATGTGCCCCCCCTTTGCTTGCTCACCGGC
TTACGCCTACCTCAAATCCCATAGTACAGACCAATCAGAGAGCTCTATAA
GCCATATTTCTTAAGAAGGCGCACACTGCCCCCATAGTACACCCATAGTA
CAGGCCAATCAGTGGGCGACTTGGGGCCGCGTGACGTCGATAAACCCGAC
CAGCACACCAGAGCGAGGGCAGCCGAGCAGCAGGCACAGCAGCATATTTT
TGCGCCCTACTTCATGTCGGGTCTGCATGTCTGCGGTGCGATGATGAAGA
GATCGATCTTGATCGCATTGCTTCTCTTTATTCCGCACGGAGGTCAGCTT
GTAGTTGCTCCTCCCTCCTTCGCCCCCGTCGGGAGGCCGAAAAACAGCAA
AAATAAGAAAAGTTCGCGCAAGCCCGGGCCTCAGTCAGAGTACGACAGGA
GACAAAAGCGGCGGGCCGTCCAGCACAATGACGCCAGGTGGAGTTCGTGG
TCCGAGGAGGGAGGTCCCGCGGGAGGGAGCAGTGCCGGGGAGGGTGGTTC
TTCCGCCCGCGGAGGTAGCAGCGGCAGCGGCAGCGGCGGCGGCAGCGGCG
GCGCTGTGGGTTCGCCTCCCGCACCGGCAAGCAGCAGCAGCAGCGGCGGC
GGCGGCGGCGGCGGCAGCGGCGAAGGGCAACCTTCGGCACCGCCGGTGAG
AGCACCTCTAAACTAATTGTGTACCCTGCCTTACCTGCTGTTACACATTT
GTTACAGCAGTCTCAGTGCTTCCAGTCACACGATGATGGCTTCCTCTATT
TTTCTATATTTTCCTTCGCGGGCCTCTGCGGCCTGTATCTACAACAAGTA
ATAGCCGTCGACAAGGATGGATGACTGCACCGATGAGGGGTGCTCTAACC
ACGACCCACGCGCCAAAAAATGCGGGTTGGACGTCGCGTGTACTACTCTG
TCGTATGTAACTTCGGCTATTGATTCGTGTTTTTTTATTGTATTTGTGTT
CAAAATCAAGCTGCCGCTGTATACAATCGGTCCTGGGAAACCCTCTCAAT
CTGCCTTGGCGCCCTGTGGCGCCCTGACCCTGTTTGTGTCAGCAGAGATC
TGGTCAACGAAAGTTCGTGCAGCGGGTCAAGGACAAGATCTCGAAGAGTG
CGCCAAACCACGTGATCGGAACATACCCGTTCGACGGCCTGTGGGTTCAC
CCCCCAGATCCGATCATGCTGAAATCTATAAACTTGGAAGATCATCACCT
CCGTCCAGTGTTTGCCTGGACCCTGAGTACTCGTTTCCTCATGCCTTGTC
GGAGGGGCGGCCGCCTTGCCCGCGCTGCAAGACAACGACGCACACTATTG
CGAAGGGGTTCATCTCGCGGTGGTCGACCAACCGGTGCTTGAAGCCGTGC
AGGTTAGTTTTCTTTGCCGTGCAGCTTGTTGACGGTTTCGGGTATATATT
TGTTTTCCGCTCTCCTTTGCTTTTCCAAATTATTTGTTTTTCATGCCAAA
GATGCGAACCAATGACGACTCATTTTTGCTGATCCCCCGCTCTGTCAGAG
GATGACATCGATGCTTTTCGGCCAGGCGAAGTACTCAACGTGGGTACCAA
CGAGCGCGTACCATGACACGGGGGAACGCAGCGGGTTCGTGCGGAATGTT
TCCGAGGGGGGGGGCGTCAGAATCGCCGGAGGGAAGCGATTTGGGCGAGC
TTGAGAGCAGTACAGTCAGCGAGGCCGTGCCGCTTGACGAGCTGACACCG
TCGGCGGCTGGCCTCGCAAGCATGCAGGGAGTGCAGGTGCCTTCCATGCC
CGTCAGCACTAGCTTTGAACGCACCAAGTTTGATGGCATGTGGATGCATT
TCACGAATCCGGATTCGCGGCAGTCTTTTGTCAACTTCGACGCCTTTGCG
CTGGAGTGGAACAAGAGCGTATCTGCCATGGAAGAGGGGAAGAGCCCGGT
GGTCCCCATCTTCAGGAAGACGGCCGCATCCTTGAAGTCGCACTGGAAAA
AGTGAGAATATTTACAACTTCTGAACCTTAAGTTCGTTGGACTTTCGACA
TGTTCTTCGCATCTTGGCTCTTGAGGTCTTACTATTCGGGACTAAAAGCT
GCCGTTGTCTTATCACATGCTTGCCTACAACTCGCGTGACAGGCACCACG
AAGACATCAACACAAGAGACACGTTGCGGGCTGTTCCAAAGGAGGCAGAG
TCCGTCAGGCTGCAACTTCGTACGCCGATGGATGTTCAAGGCGCCGCAGC
CTCCCCGGCAGAGCGCTGGTTGCCCTCAGCGCCTGCTGACTTCTCGTTTC
CTCCGCAGATGGCCGATGTGGGAGGAAGCAGCGGCTCGTCAGAAGTTGCT
GCCGCTGGTGCCGCTGGTGCCGCTGGCGCTACTGGTGCGGCTGGCGTTGC
TCGTGCTGGTGCCGCTGGTGGGACAGCGCCCACTGCGCGGCCGCGGGCTG
CCCAAATGTGCCGTACATGCGGGCACAAGATGCGAGTGGGACCCTTCAAA
CGATACCACACCCAGTTTTTGGCAGCAGCTGCAGGGTCTCGTTGTACCGT
ACCAGAGAGTTTGCGCCGGCCGGTAGTCCAACCAAGCGCGTCAAGGCCAG
TAAGGATTTTTGGGGGCATGTGCGAGTGCCTTGGGGACGAAGCTCATCCG
GGGATGCAGTTCGGTGTCATAGCCAGAAGCGCACCAGCAAAAGCAGTGGT
TTTCCATGCAAAGATTGGAAGTTTGTGTGATTTGAGGGAGGATACTTGTG
TGCCGCTAGATGCTTCATGGCCCCATTCAAGGTACCTTTCGGAGGAGGCG
GAGGCCGCGTAGACGCTGTGTCAGTAGCTTCGGTGAATCGAATCCAACTC
ACCAATAAAAAAAATATTCGGACAATCCTGGTACATATTTTGCACATTCC
CCGAGACTACATATGAGCCAAAAAGCAACCGAGAGGTCGGAGGGAACCCT
CATGGGTTGCGGGGCACCCCTGCACAAGCCCGTTTTGGAATGGCGTAGAA
TCCCCAAGAGTTACGGCCAGAGTTACAACATATGACAAACACCGCAAAAA
TCAGTGCCAATAAAAACGCCTCTTTATATATTTTTTCGCGCTTCGCGCGA
AATAATTTAATTCCCCAGTCAGGTAAGTCCATGGGGGTCGAGCCAACCAA
CTTGGCAGCATCGGGCACGAGCGTCCGTGACGGAACAGAGAGAGAGGGAT
GGAAAACTCTCCGGCGAGAAGTTCGCCAGCTTGAAGTTTGTAGAGAGGTA
AGTCCGGCTACTCAATACAAAACGAAAGAAAGACTCCGGAGGTCATTTAT
TTAGCGCACATTCGGGCAAGGCTGTCACAGAGTGCCCTGCTTGCCTCCGC
TGCAGAGGACGCTCACACATGGGGTCATTTCGGCGAGAATGATTCAACAC
AGCAGTGTATATTGGT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig89:43674..48239-

>mRNA_C-linearis_contig89.16392.1 ID=mRNA_C-linearis_contig89.16392.1|Name=mRNA_C-linearis_contig89.16392.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at C-linearis_contig89:43674..48239- (Chordaria linearis ClinC8C monoicous)
ATGGTTTTTTATGTGAAGACAACAACAACAACAATACATGAATGGTTTTT
TATGTGAAGACAACAACAACAACAATACATGACGCACATTCGGGCAAGGC
TGTCACAGAGTGCCCTGCTTGCCTCCGCTGCAGAGGACGCTCACACATGG
GGTCATTTCGGCGAGAATGACGCACATTCGGGCAAGGCTGTCACAGAGTG
CCCTGCTTGCCTCCGCTGCAGAGGACGCTCACACATGGGGTCATTTCGGC
GAGAATGA
back to top