mRNA_C-linearis_contig88.16389.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16389.1
Unique NamemRNA_C-linearis_contig88.16389.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:759122..760218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16389.1prot_C-linearis_contig88.16389.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 759802..760113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.5494032-UTR-C-linearis_contig88:759121..7592041622930676.5494032-UTR-C-linearis_contig88:759121..759204Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 759122..759204 +
1690881191.0646462-UTR-C-linearis_contig88:759121..7592041690881191.0646462-UTR-C-linearis_contig88:759121..759204Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 759122..759204 +
1622930676.5739124-UTR-C-linearis_contig88:759799..7598011622930676.5739124-UTR-C-linearis_contig88:759799..759801Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 759800..759801 +
1690881191.0773659-UTR-C-linearis_contig88:759799..7598011690881191.0773659-UTR-C-linearis_contig88:759799..759801Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 759800..759801 +
1622930676.6061878-UTR-C-linearis_contig88:760113..7602181622930676.6061878-UTR-C-linearis_contig88:760113..760218Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 760114..760218 +
1690881191.0976615-UTR-C-linearis_contig88:760113..7602181690881191.0976615-UTR-C-linearis_contig88:760113..760218Chordaria linearis ClinC8C monoicousUTRC-linearis_contig88 760114..760218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.5896251-CDS-C-linearis_contig88:759801..7601131622930676.5896251-CDS-C-linearis_contig88:759801..760113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 759802..760113 +
1690881191.0873902-CDS-C-linearis_contig88:759801..7601131690881191.0873902-CDS-C-linearis_contig88:759801..760113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 759802..760113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16389.1

>prot_C-linearis_contig88.16389.1 ID=prot_C-linearis_contig88.16389.1|Name=mRNA_C-linearis_contig88.16389.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
MTGGRNGDPDKKAEGAKTGRGNVTGSTVPYAARLEDFSDIPLNCMKRGDD
WRSFDGVKRRRNGQMGISSTTGGRWSSCGRSGTGSVQTAHASPRRAPRGR
ETA*
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mRNA from alignment at C-linearis_contig88:759122..760218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16389.1 ID=mRNA_C-linearis_contig88.16389.1|Name=mRNA_C-linearis_contig88.16389.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1097bp|location=Sequence derived from alignment at C-linearis_contig88:759122..760218+ (Chordaria linearis ClinC8C monoicous)
GACCGAAGCTCAATACGCCAACCCGAAGACGGAGGAGGAGAAGAGGAGGA
AGAAGAAGAAAACCGAGGACAGTGCCGCGGCAGGTGAGTGTGATACAACC
TGCAGAAGAAGTCGTTGCAGAACCCATCTTGATTTCAGTCTGGAATTTGT
TCTTTGCAGTCAATGCTAGACTGCCATTGCTTGTTTGTTGATTTGTTTGC
TATTGTTGTTTACATTTTTGGCACCACTAAAGCGCATCCTGACGCCCTAC
AGTTGCTCACCGGTCTTCCCTCGTGTGCCCCGCACCCGATGAAACCACCT
CATCAACGCTCCCTGTTCAATGGAACATCTCGATACCATGGCGTGCGTCT
GACCCTTTCAATGAAGTATGGCTCACCCGTCGTTCCCTGGTGTGAGAGGC
ACCCCATGTACCCACGGCACCCCCGCTCCCTGCTCCATAGAATATCTTGA
TACCGTCGCGTGCGTCTGACCCGTTAAATGAGATGCTGTTGTTGTTGTTC
GTTGGGTACGCTTTTATAGTTGTATCTGTCTCGTCATTCGCTATTAGCTG
TTTCGTGGTGTGGTGACTTCTGCGGTACAGACGAGGAAACCGCGATGACA
ACCCGTCGCTACAATCACGCTGTCGTAGACATGTATAATCGACACGAAAC
GGTCGACCGTTTCGTTCACGCCCGACAGGTATGACCGGAGGTAGGAACGG
AGACCCCGACAAGAAGGCAGAGGGGGCCAAGACCGGCCGGGGGAACGTCA
CGGGGTCCACCGTGCCCTACGCCGCGCGTCTCGAAGACTTCTCGGACATC
CCTCTCAACTGCATGAAGCGCGGGGACGACTGGCGCTCTTTTGACGGCGT
CAAAAGGAGGAGGAACGGGCAGATGGGCATATCGTCGACGACGGGGGGAA
GGTGGTCTTCTTGCGGCAGGAGCGGCACTGGAAGTGTGCAAACAGCACAT
GCAAGCCCCCGGAGGGCGCCACGGGGACGAGAAACGGCGTAGTCTACAAG
GTCTCATCCAAGCAGGACAGCCAATTCCGGGTGGCGAAGCGGACCACCAC
GTGACGCGATGATGATGGTTAGAGTCCGACAAGCGGATGAGGTCGCG
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Coding sequence (CDS) from alignment at C-linearis_contig88:759122..760218+

>mRNA_C-linearis_contig88.16389.1 ID=mRNA_C-linearis_contig88.16389.1|Name=mRNA_C-linearis_contig88.16389.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig88:759122..760218+ (Chordaria linearis ClinC8C monoicous)
ATGACCGGAGGTAGGAACGGAGACCCCGACAAGAAGGCAGAGGGGGCCAA
GACCGGCCGGGGGAACGTCACGGGGTCCACCGTGCCCTACGCCGCGCGTC
TCGAAGACTTCTCGGACATCCCTCTCAACTGCATGAAGCGCGGGGACGAC
TGGCGCTCTTTTGACGGCGTCAAAAGGAGGAGGAACGGGCAGATGGGCAT
ATCGTCGACGACGGGGGGAAGGTGGTCTTCTTGCGGCAGGAGCGGCACTG
GAAGTGTGCAAACAGCACATGCAAGCCCCCGGAGGGCGCCACGGGGACGA
GAAACGGCGTAGATGACCGGAGGTAGGAACGGAGACCCCGACAAGAAGGC
AGAGGGGGCCAAGACCGGCCGGGGGAACGTCACGGGGTCCACCGTGCCCT
ACGCCGCGCGTCTCGAAGACTTCTCGGACATCCCTCTCAACTGCATGAAG
CGCGGGGACGACTGGCGCTCTTTTGACGGCGTCAAAAGGAGGAGGAACGG
GCAGATGGGCATATCGTCGACGACGGGGGGAAGGTGGTCTTCTTGCGGCA
GGAGCGGCACTGGAAGTGTGCAAACAGCACATGCAAGCCCCCGGAGGGCG
CCACGGGGACGAGAAACGGCGTAG
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