mRNA_C-linearis_contig88.16387.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig88.16387.1
Unique NamemRNA_C-linearis_contig88.16387.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.420e-21
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLI 156
            ++LR+ACDACHRMKRKCDG  PC RC RRSR C YSYKQKSGPPKGSKRKLI
Sbjct:  205 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLI 256
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.420e-21
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLI 156
            ++LR+ACDACHRMKRKCDG  PC RC RRSR C YSYKQKSGPPKGSKRKLI
Sbjct:  181 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSKRKLI 232
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A5N6U4X0_9EURO (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Aspergillus avenaceus TaxID=36643 RepID=A0A5N6U4X0_9EURO)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-8
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    7 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRK 150
            LR AC+ CHRMK +C G  PC+RC     DC YS+  K G PKGS+ K
Sbjct:   27 LRRACNLCHRMKLRCSGTSPCSRCHDAGSDCVYSFAAKIGKPKGSRNK 74
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: D7G645_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G645_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    7 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGP 129
            LR  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP
Sbjct:   53 LRTTCDACTIGKIKCDGGHPCKRCQRRGSECVYREKKRCGP 93
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A6H5J8L2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:    7 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGP 129
            LR  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP
Sbjct:  179 LRTTCDACTIGKIKCDGGHPCKRCQRRGSECVYREKKRCGP 219
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A836CEN4_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.950e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    7 LRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRKLIE 159
            ++AACD CHR KRKC G  PC+RC+ +   C +S + K GP +  KR++ E
Sbjct:   40 VKAACDHCHRRKRKCSGTEPCSRCQAKGIVCVFSMRSKRGPKR--KRRVSE 88
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: D7G644_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G644_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.600e-6
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   10 RAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGP 129
            R  CDAC   K KCDG HPC RC+RR  +C Y  K++ GP
Sbjct:   56 RTTCDACTLGKIKCDGGHPCRRCQRRGSECVYREKKRCGP 95
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A2H3J9L9_WOLCO (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J9L9_WOLCO)

HSP 1 Score: 46.6 bits (109), Expect = 1.440e-5
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   16 ACDACHRMKRKCDGKHP-CTRCERRSRDCFYSY-KQKSGPPKGSKR 147
            ACD+C + K +CDG+ P C+ C     +C Y+  + KSGPPKGSKR
Sbjct:    7 ACDSCRKRKLRCDGRTPSCSNCSLYEANCHYAAGRNKSGPPKGSKR 52
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: A0A2T2N916_CORCC (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Corynespora cassiicola Philippines TaxID=1448308 RepID=A0A2T2N916_CORCC)

HSP 1 Score: 48.5 bits (114), Expect = 4.450e-5
Identity = 23/46 (50.00%), Postives = 26/46 (56.52%), Query Frame = 1 
Query:   10 RAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKR 147
            R ACD C   K +CDG HPC+RCE  S DC Y        PKG +R
Sbjct:    8 RRACDPCSVRKVRCDGNHPCSRCEAASWDCTYLKTHGKSGPKGPRR 53
[Close]
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Match: UPI001B36BE9F (uncharacterized protein n=1 Tax=Cryphonectria parasitica EP155 TaxID=660469 RepID=UPI001B36BE9F)

HSP 1 Score: 47.8 bits (112), Expect = 8.350e-5
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   16 ACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKG 138
            AC+ C R K +CDGK PC+RC+++  +C Y  + ++ PP G
Sbjct:    5 ACEPCRRRKIRCDGKIPCSRCDKKPSECVYRLRTRATPPDG 45
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LM00_ECTSI4.420e-2182.69Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE4.420e-2182.69Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A5N6U4X0_9EURO1.270e-854.17Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G645_ECTSI1.420e-656.10Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5J8L2_9PHAE1.420e-656.10Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CEN4_9STRA1.950e-647.06Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G644_ECTSI3.600e-655.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A2H3J9L9_WOLCO1.440e-550.00Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A2T2N916_CORCC4.450e-550.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
UPI001B36BE9F8.350e-543.90uncharacterized protein n=1 Tax=Cryphonectria para... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:741577..741741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.1
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog36630.CADNFIAP00005731
KEGG koko:K21546
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
EggNOG OGs20MNE@147545,2EPHI@1,2SSPP@2759,3ADWM@33154,3P8QN@4751,3QZ8H@4890,3SBGT@5042
COG Functional cat.K
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930688.625277-CDS-C-linearis_contig88:741576..7417411622930688.625277-CDS-C-linearis_contig88:741576..741741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 741577..741741 -
1690881198.005041-CDS-C-linearis_contig88:741576..7417411690881198.005041-CDS-C-linearis_contig88:741576..741741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig88 741577..741741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16387.1prot_C-linearis_contig88.16387.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig88 741577..741741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig88.16387.1

>prot_C-linearis_contig88.16387.1 ID=prot_C-linearis_contig88.16387.1|Name=mRNA_C-linearis_contig88.16387.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=55bp
MLLRAACDACHRMKRKCDGKHPCTRCERRSRDCFYSYKQKSGPPKGSKRK
LIEEE
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mRNA from alignment at C-linearis_contig88:741577..741741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig88.16387.1 ID=mRNA_C-linearis_contig88.16387.1|Name=mRNA_C-linearis_contig88.16387.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at C-linearis_contig88:741577..741741- (Chordaria linearis ClinC8C monoicous)
ATGCTCCTCCGCGCGGCTTGCGACGCCTGCCACCGGATGAAGCGCAAGTG
CGATGGGAAGCACCCCTGCACCCGCTGCGAGCGGCGCAGCCGCGACTGCT
TCTACAGCTACAAGCAAAAGTCCGGCCCGCCCAAGGGAAGCAAGCGCAAG
CTGATCGAGGAGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig88:741577..741741-

>mRNA_C-linearis_contig88.16387.1 ID=mRNA_C-linearis_contig88.16387.1|Name=mRNA_C-linearis_contig88.16387.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at C-linearis_contig88:741577..741741- (Chordaria linearis ClinC8C monoicous)
ATGCTCCTCCGCGCGGCTTGCGACGCCTGCCACCGGATGAAGCGCAAGTG
CGATGGGAAGCACCCCTGCACCCGCTGCGAGCGGCGCAGCCGCGACTGCT
TCTACAGCTACAAGCAAAAGTCCGGCCCGCCCAAGGGAAGCAAGCGCAAG
CTGATCGAGGAGGAGATGCTCCTCCGCGCGGCTTGCGACGCCTGCCACCG
GATGAAGCGCAAGTGCGATGGGAAGCACCCCTGCACCCGCTGCGAGCGGC
GCAGCCGCGACTGCTTCTACAGCTACAAGCAAAAGTCCGGCCCGCCCAAG
GGAAGCAAGCGCAAGCTGATCGAGGAGGAG
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